Rmu_co8002498.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8002498.1
OG0000598
Physical Location & Seq
Reverse (-)
2 .. 507
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8002498.1_g000001.1.cds

Sequence Viewer

Length: 506 bp
atgtatggttccagcaaatctgcaattaaacctgaacaaatgactgatgaggtctgggattttattttctgtgatggcccatatcctaaattatccgacatctcatcatcaattctgagtgagatgaagcaggagtttgaatattggtatccttttgatcttcgggtgtctggcaaggatctaatacaaaatcatttaaccttctgcatctacaaccatacagctattatgtccaagaagcactggcctcgtggtttcagatgcaatgggcacataatgctcaatgctcagaaaatgtccaagtccacaggaaactttaggacaattcgccaggcaattgtggaattttcagctgatgccactcgcttttctttggctgatgctggagatggtgttgatgatgcaaattttgcatttgacactgccaatgctgcaatcctgcggctcactaaagagatctcatggatggaagaagttttaggtgcaaactcttctttgagaccagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

169

Amino Acids

19.14

Weight (kDa)

5.79

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 442
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 2 cut(s) 344, 406
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 2 cut(s) 224, 353
AluI AGCT 2 cut(s) 224, 353
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 1 cut(s) 186
AoxI GGCC 2 cut(s) 76, 245
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 344, 406
AspS9I GGNCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 273
BauI CACGAG 1 cut(s) 249
BbvI GCAGC 1 cut(s) 418
BccI CCATC 3 cut(s) 68, 383, 460
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 2 cut(s) 332, 504
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 493
BfuI GTATCC 1 cut(s) 159
BglII AGATCT 1 cut(s) 456
BisI GCNGC 2 cut(s) 432, 443
BlsI GCNGC 2 cut(s) 433, 444
Bme1390I CCNGG 2 cut(s) 332, 504
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 332, 504
BmsI GCATC 5 cut(s) 216, 251, 346, 370, 391
BpmI CTGGAG 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 2 cut(s) 332, 504
BseGI GGATG 1 cut(s) 471
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 107, 302
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 2 cut(s) 78, 247
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 2 cut(s) 78, 247
Bso31I GGTCTC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 157, 178, 456
BspACI CCGC 1 cut(s) 442
BspANI GGCC 2 cut(s) 78, 247
BspCNI CTCAG 2 cut(s) 108, 301
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 1 cut(s) 248
BssMI GATC 3 cut(s) 157, 178, 456
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 332, 504
Bst6I CTCTTC 1 cut(s) 496
BstAPI GCANNNNNTGC 2 cut(s) 277, 410
BstDEI CTNAG 2 cut(s) 116, 288
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 3 cut(s) 160, 181, 459
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 157, 178, 456
BstMWI GCNNNNNNNGC 3 cut(s) 277, 410, 431
BstNI CCWGG 2 cut(s) 332, 504
BstSCI CCNGG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 418
BstX2I RGATCY 2 cut(s) 178, 456
BstYI RGATCY 2 cut(s) 178, 456
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 78, 247
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 241, 420
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 462
CviJI RGCY 6 cut(s) 78, 224, 247, 353, 377, 445
CviKI_1 RGCY 6 cut(s) 78, 224, 247, 353, 377, 445
DdeI CTNAG 2 cut(s) 116, 288
DpnI GATC 3 cut(s) 159, 180, 458
DpnII GATC 3 cut(s) 157, 178, 456
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 330
FaeI CATG 1 cut(s) 465
FaiI YATR 6 cut(s) 6, 82, 219, 230, 275, 463
FatI CATG 1 cut(s) 461
Fnu4HI GCNGC 2 cut(s) 432, 443
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 432, 443
GluI GCNGC 2 cut(s) 432, 443
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 78, 247
Hin1II CATG 1 cut(s) 465
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 4 cut(s) 97, 117, 260, 291
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 7 cut(s) 23, 207, 264, 404, 413, 434, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 410, 431
HpyF3I CTNAG 2 cut(s) 116, 288
Hsp92II CATG 1 cut(s) 465
Kzo9I GATC 3 cut(s) 157, 178, 456
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 5 cut(s) 216, 251, 346, 370, 391
MalI GATC 3 cut(s) 159, 180, 458
MboI GATC 3 cut(s) 157, 178, 456
MboII GAAGA 3 cut(s) 152, 482, 483
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 178, 456
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 7 cut(s) 24, 89, 111, 324, 336, 344, 406
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 43, 258
MseI TTAA 2 cut(s) 27, 197
MspA1I CMGCKG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 332, 504
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 332, 504
MwoI GCNNNNNNNGC 3 cut(s) 277, 410, 431
NdeII GATC 3 cut(s) 157, 178, 456
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 433, 444
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 2 cut(s) 178, 456
PvuII CAGCTG 1 cut(s) 353
SaqAI TTAA 2 cut(s) 27, 197
SatI GCNGC 2 cut(s) 432, 443
Sau3AI GATC 3 cut(s) 157, 178, 456
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 332, 504
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 34, 54, 203, 226, 355, 484
SfaNI GCATC 5 cut(s) 216, 251, 346, 370, 391
Sse9I AATT 7 cut(s) 24, 89, 111, 324, 336, 344, 406
SsiI CCGC 1 cut(s) 442
SspI AATATT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 330
TasI AATT 7 cut(s) 24, 89, 111, 324, 336, 344, 406
TauI GCSGC 1 cut(s) 445
Tru1I TTAA 2 cut(s) 27, 197
Tru9I TTAA 2 cut(s) 27, 197
TscAI CASTG 2 cut(s) 248, 427
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 2 cut(s) 248, 427
XapI RAATTY 2 cut(s) 344, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.