Rorug01G0377300

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000598
Physical Location & Seq
Reverse (-)
49075039 .. 49077839
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0377300.1

Sequence Viewer

Length: 2751 bp
ATGTTTCGATTGCTAATTGATCTTGATACTACGTACACTTTGCGGCAGCTATCTTATTGTCATGATGAGGAGAGCTCTGCCTTGCTACAATTCAAGCAAAGCCTTACTATCGATGCATCTGCTTCGGGTTTAGAGGGTGCTTATCCGAAAGTGTTGTCCTGGAAACAAGCTCAAGGAGGAAACAACACCAACTGCTGCACATGGGATGGGGTCGAATGTGACGAACACACGGGTCATGTGATCGGGCTTGATCTCAGAAGCAGTTGTCTCTACGGCTCTATTCACTCCAACAGCTCCCTCTTCCGTCTTGTTCACCTTCAGAGGCTGAACCTTGCCGATAATCACTTCAATTACTCTCAAATTCCTACTAGCATTAGGAATTTTCCAAGGCTCACCCATCTCGACCTCTCTGCCTCTGTATTTTCTGGTCGAGTCCCATCGGAAGTTTCACAGTTGGTCAAGTTGTCACTTCTTAATCTTTCTTTCAATACCGACCCTTCTTCGGGTGTAGGATTGTTGAAACTTGATGGATCCAATTTCAGAAGTCTAGTTCAAAACTTAACTAATCTTCAACATCTTCGTCTCCGTTTCATCAACATATCTTCGCCAATACCTGATTCCTTGGCCAATTTATCATTTTTGACAACCCTTGACTTACATCAGTGTCACTTATTTGGAGACTTCCCAGCTAGAATTTTCCAGTTACAAAACTTGCAAAATCTCTATCTCAGAGACAACCAAGATCTCATTGGTTATTTGCCTGAATTTAATAAAAGTAGTCCTCTCATAACTCTCGATTTGGATGTGGCTGCCTGCAATTTTTCAGCAGGGTTGGTTCCATCTTCGATAGGTAATCTCAGAGAACTGACTTATCTAGATATTTCAGCAAACCAATTTGGAGGTCCTGTTCCAGATTCTTTTGCAAACCTTACAAAATTGTCTGTTTTTAGGATTAGTACGAGTCTACTAACTGGTCCAATCCCATCCTGGCTAGGTAATTTTAGCGAACTAGAGTACCTAGACTTTGGTTATAACAAATTGAGTGGTTCAATTCCTACATCATTTTCCAATCTCACGGACCTCCAGATTCTTTATCTTCAGTCCAATAACCTGAGCGGTATAGTGGAGTTTCAAACATTTCAACACCTGCAAAATCTCAACCAACTCGATCTAAGATCTAATTCTCTGGAATTTTTATCTGAATCCACAGCTGTGAATGCAAGTACTGTTCCACAATTCACCCAACTAAGGTTAACTTCATGCAACATAAAAGAGTTCCCATATTTCCTGAGATATCAAAAACATTTGGAGCAGTTGATGCTCAATAAAAACAAAATCCATGGTCAAGTACCGAAATGGATGTGGAACATGAGCACAGAATCCTTGATTCGGCTAGACATTTCTGAAAATTTCCTTTCAGGCCAACTTCCTGTTTTCTTTCCTTGGGTCAACCAACTACACTTGAGTCTTTCTTCCAACATGTTCCATGGGCCACTGCCGATACCTGCATCATCCACTTTAGTCTATGAAGCTAATGACAACAAATTTACTGGTAAACTTTCACCAGTGATCTGCAATATGAGTTCTCTTCGGGCCCTTGTATTGGACAATAACAACTTGAGTGGCATGATTCCGCAGTGTTTCGGAAACTTCAGTGATCGATTGACACTTCTACTTCTTCGAAATAACTCGTTTCATGGCACTCTACCACAAACATACACCAACAAAAGCAACTTGAGGATACTTGATGTGAGTCAAAATCAATTGCAAGGGCAACTACCAAGGTCATTGGCGAATTGTCTGATGCTTGAGACTTTGGTCCTGTCAAACAATTACTTCAATGATGTCTTTCCCTTTTGGATGGCTACTCTACCTGAGTTGAAACTTTTGGCAATGCGGCATAATGCGTTCCAGGGATTGATAGGAAAGCCTGAAAATAATCAGCAGTTCCCAAAGTTGCGTGTCTTAGATATTTCTCACAATAACTTCACAGGCAAGTTTGTGGCTGAATACATCTTCTCCAAGTATGCCATGAGATCAGTCAACCAGTCGTCCTATATGAGGTTTGGCATCAATTACAGCTCTGGTAATAATGATTGGCTCATTTATGCTTCCACGATTAATATAACCATTAAAGGTGTGGATAGATACTATCCAAGGGTTCAAGAAGCTTTTGCAGTCATTGATATCTCAAGCAACAAATTTGAAGGGAAGATTGATGAATCCATTGGGAGTCTAAAAGGGCTTTGGTCACTTAATTTTTCCAATAATCTTCTCAGCGGTGGTATCCCGTCATCGTTTGGGAACTTGACGAATCTTGAAGTACTAGACCTTTCCAATAACAAGCTCTGGGGAGAGATTCCCAAACAATTCGCACAGCTGACATTCCTTGCAGAATTCGATGTCTCTCACAACAATCTCACAGGTCCAATACCGCGTGGACCGCAACTCAATACCTTCTCTAGCACTTCATATGAGGGAAATCCCGGATTGTGCGGAGATCCTTTGCCAAAGAGATGTCAGAGCTCTAATGCCCCACCGCAACTGCCACCTTCAAGCACAGAAGAAAATGATTCTGGAAGTGAATTTGAATGGGCTTTTGTGCTCGCTGGATGCGGAAGTGGGTTCGTGGTGGGAGTTGTGCTTGCGGACTTGGCCATCACACGGAGGCGTGAGTTCTTTCTTGAGATAGTTGGAACGTTGATCAGACTAATGGAAATGATCACAAGCTGGAAGGGGTTTGGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

916

Amino Acids

102.52

Weight (kDa)

6.11

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 74 7.5e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 83 - 173 4.7e-06 Leucine-rich repeat region
LRR_14 PF23598 184 - 248 4.3e-07 Leucine-rich repeat region
LRR_14 PF23598 279 - 468 1.1e-12 Leucine-rich repeat region
LRR_8 PF13855 312 - 371 6.1e-08 Leucine rich repeat
LRR_8 PF13855 603 - 663 1.1e-06 Leucine rich repeat
LRR_8 PF13855 764 - 807 4.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AarI CACCTGC 1 cut(s) 1155
Acc36I ACCTGC 2 cut(s) 1155, 1513
AccBSI CCGCTC 1 cut(s) 1116
AccI GTMKAC 1 cut(s) 964
AccII CGCG 1 cut(s) 2437
AclI AACGTT 1 cut(s) 2699
AclWI GGATC 3 cut(s) 525, 538, 2495
AcoI YGGCCR 2 cut(s) 624, 2655
AcuI CTGAAG 3 cut(s) 302, 1082, 1636
AfaI GTAC 6 cut(s) 35, 958, 1016, 1225, 1350, 2325
AfiI CCNNNNNNNGG 7 cut(s) 502, 503, 1248, 1389, 1603, 2061, 2664
AflIII ACRYGT 1 cut(s) 1479
AjnI CCWGG 3 cut(s) 158, 986, 1911
AjuI GAANNNNNNNTTGG 2 cut(s) 601, 633
AleI CACNNNNGTG 1 cut(s) 1211
AloI GAACNNNNNNTCC 2 cut(s) 891, 923
Alw21I GWGCWC 4 cut(s) 77, 1376, 2528, 2607
Alw26I GTCTC 6 cut(s) 272, 587, 672, 726, 1805, 2410
AlwI GGATC 3 cut(s) 525, 538, 2495
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 5 cut(s) 624, 1420, 1490, 1593, 2655
ApaI GGGCCC 1 cut(s) 1597
ApeKI GCWGC 3 cut(s) 46, 195, 809
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 1 cut(s) 2121
AspS9I GGNCC 9 cut(s) 902, 974, 1078, 1490, 1593, 1594, 1819, 2426, 2441
AsuC2I CCSGG 1 cut(s) 2487
AsuHPI GGTGA 4 cut(s) 305, 385, 1231, 1554
AsuII TTCGAA 1 cut(s) 1681
AvaII GGWCC 6 cut(s) 902, 974, 1078, 1819, 2426, 2441
BaeGI GKGCMC 1 cut(s) 1597
BaeI ACNNNNGTAYC 2 cut(s) 998, 1031
BalI TGGCCA 2 cut(s) 626, 2657
BamHI GGATCC 1 cut(s) 530
BanII GRGCYC 3 cut(s) 77, 1597, 2528
Bbv12I GWGCWC 4 cut(s) 77, 1376, 2528, 2607
BbvI GCAGC 3 cut(s) 58, 182, 796
BccI CCATC 8 cut(s) 200, 405, 445, 521, 847, 991, 1855, 2666
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 6 cut(s) 101, 105, 135, 139, 392, 426
BciT130I CCWGG 3 cut(s) 160, 988, 1913
BciVI GTATCC 2 cut(s) 1734, 2297
BclI TGATCA 2 cut(s) 2703, 2721
BcnI CCSGG 1 cut(s) 2487
BcoDI GTCTC 6 cut(s) 272, 587, 672, 726, 1805, 2410
BfuAI ACCTGC 2 cut(s) 1155, 1513
BfuI GTATCC 2 cut(s) 1734, 2297
BglII AGATCT 2 cut(s) 742, 1175
BisI GCNGC 5 cut(s) 44, 47, 196, 810, 1898
BlsI GCNGC 5 cut(s) 45, 48, 197, 811, 1899
BmcAI AGTACT 2 cut(s) 1225, 2325
Bme1390I CCNGG 4 cut(s) 160, 988, 1913, 2487
Bme18I GGWCC 6 cut(s) 902, 974, 1078, 1819, 2426, 2441
BmgT120I GGNCC 9 cut(s) 902, 974, 1078, 1490, 1593, 1594, 1819, 2426, 2441
BmiI GGNNCC 3 cut(s) 532, 837, 1595
BmrFI CCNGG 4 cut(s) 160, 988, 1913, 2487
BmsI GCATC 7 cut(s) 103, 125, 1308, 1517, 1794, 2079, 2603
BoxI GACNNNNGTC 1 cut(s) 1817
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 1 cut(s) 1067
Bpu10I CCTNAGC 1 cut(s) 1112
Bpu14I TTCGAA 1 cut(s) 1681
BpuEI CTTGAG 7 cut(s) 156, 1483, 1639, 1756, 1829, 2176, 2705
BpuMI CCSGG 1 cut(s) 2487
Bsa29I ATCGAT 2 cut(s) 111, 1660
BsaAI YACGTR 1 cut(s) 33
BsaJI CCNNGG 8 cut(s) 386, 621, 1339, 1442, 1486, 1781, 1912, 2156
BsaXI ACNNNNNCTCC 4 cut(s) 891, 921, 2003, 2033
Bsc4I CCNNNNNNNGG 7 cut(s) 502, 503, 1248, 1389, 1603, 2061, 2664
Bse1I ACTGG 5 cut(s) 700, 976, 1555, 1565, 2047
Bse3DI GCAATG 1 cut(s) 1899
BseBI CCWGG 3 cut(s) 160, 988, 1913
BseCI ATCGAT 2 cut(s) 111, 1660
BseDI CCNNGG 8 cut(s) 386, 621, 1339, 1442, 1486, 1781, 1912, 2156
BseGI GGATG 7 cut(s) 211, 808, 983, 1365, 1511, 1866, 2618
BseLI CCNNNNNNNGG 7 cut(s) 502, 503, 1248, 1389, 1603, 2061, 2664
BseMI GCAATG 1 cut(s) 1899
BseMII CTCAG 7 cut(s) 268, 742, 871, 1103, 1280, 1866, 2290
BseNI ACTGG 5 cut(s) 700, 976, 1555, 1565, 2047
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 1597
BseXI GCAGC 3 cut(s) 58, 182, 796
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 2437
BshFI GGCC 5 cut(s) 626, 1422, 1492, 1595, 2657
BshVI ATCGAT 2 cut(s) 111, 1660
BsiHKAI GWGCWC 4 cut(s) 77, 1376, 2528, 2607
BsiSI CCGG 1 cut(s) 2487
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 7 cut(s) 502, 503, 1248, 1389, 1603, 2061, 2664
BsmAI GTCTC 6 cut(s) 272, 587, 672, 726, 1805, 2410
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 5 cut(s) 626, 1422, 1492, 1595, 2657
Bsp119I TTCGAA 1 cut(s) 1681
Bsp120I GGGCCC 1 cut(s) 1593
Bsp1286I GDGCHC 5 cut(s) 77, 1376, 1597, 2528, 2607
Bsp19I CCATGG 2 cut(s) 1339, 1486
BspANI GGCC 5 cut(s) 626, 1422, 1492, 1595, 2657
BspCNI CTCAG 7 cut(s) 267, 741, 870, 1104, 1281, 1867, 2289
BspDI ATCGAT 2 cut(s) 111, 1660
BspFNI CGCG 1 cut(s) 2437
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 532, 837, 1595
BspMI ACCTGC 2 cut(s) 1155, 1513
BspPI GGATC 3 cut(s) 525, 538, 2495
BspT104I TTCGAA 1 cut(s) 1681
BsrBI CCGCTC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 1899
BsrI ACTGG 5 cut(s) 700, 976, 1555, 1565, 2047
BssECI CCNNGG 8 cut(s) 386, 621, 1339, 1442, 1486, 1781, 1912, 2156
BssT1I CCWWGG 7 cut(s) 386, 621, 1339, 1442, 1486, 1781, 2156
Bst2UI CCWGG 3 cut(s) 160, 988, 1913
Bst4CI ACNGT 2 cut(s) 453, 1228
Bst6I CTCTTC 2 cut(s) 305, 1593
BstAPI GCANNNNNTGC 1 cut(s) 1318
BstBAI YACGTR 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 1681
BstC8I GCNNGC 3 cut(s) 814, 2607, 2646
BstDSI CCRYGG 2 cut(s) 1339, 1486
BstENI CCTNNNNNAGG 1 cut(s) 2059
BstF5I GGATG 7 cut(s) 211, 808, 983, 1365, 1511, 1866, 2618
BstFNI CGCG 1 cut(s) 2437
BstMAI GTCTC 6 cut(s) 272, 587, 672, 726, 1805, 2410
BstMWI GCNNNNNNNGC 4 cut(s) 1217, 1318, 2443, 2654
BstNI CCWGG 3 cut(s) 160, 988, 1913
BstNSI RCATGY 1 cut(s) 1483
BstPAI GACNNNNGTC 1 cut(s) 1817
BstSCI CCNGG 4 cut(s) 158, 986, 1911, 2485
BstSLI GKGCMC 1 cut(s) 1597
BstSNI TACGTA 1 cut(s) 33
BstUI CGCG 1 cut(s) 2437
BstV1I GCAGC 3 cut(s) 58, 182, 796
BstX2I RGATCY 4 cut(s) 530, 742, 1175, 2500
BstYI RGATCY 4 cut(s) 530, 742, 1175, 2500
Bsu15I ATCGAT 2 cut(s) 111, 1660
BsuI GTATCC 2 cut(s) 1734, 2297
BsuRI GGCC 5 cut(s) 626, 1422, 1492, 1595, 2657
BsuTUI ATCGAT 2 cut(s) 111, 1660
BtgI CCRYGG 2 cut(s) 1339, 1486
BtsCI GGATG 7 cut(s) 211, 808, 983, 1365, 1511, 1866, 2618
BtsI GCAGTG 2 cut(s) 1493, 1643
BtsIMutI CAGTG 5 cut(s) 668, 1493, 1572, 1643, 1660
BveI ACCTGC 2 cut(s) 1155, 1513
Cac8I GCNNGC 3 cut(s) 814, 2607, 2646
CaiI CAGNNNCTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 9 cut(s) 902, 974, 1078, 1490, 1593, 1594, 1819, 2426, 2441
ClaI ATCGAT 2 cut(s) 111, 1660
Csp6I GTAC 6 cut(s) 34, 957, 1015, 1224, 1349, 2324
CspCI CAANNNNNGTGG 4 cut(s) 1024, 1059, 1603, 1638
CviQI GTAC 6 cut(s) 34, 957, 1015, 1224, 1349, 2324
EaeI YGGCCR 2 cut(s) 624, 2655
Eam1104I CTCTTC 2 cut(s) 305, 1593
EarI CTCTTC 2 cut(s) 305, 1593
Ecl136II GAGCTC 2 cut(s) 75, 2526
Eco105I TACGTA 1 cut(s) 33
Eco130I CCWWGG 7 cut(s) 386, 621, 1339, 1442, 1486, 1781, 2156
Eco24I GRGCYC 3 cut(s) 77, 1597, 2528
Eco32I GATATC 2 cut(s) 1295, 2188
Eco47I GGWCC 6 cut(s) 902, 974, 1078, 1819, 2426, 2441
Eco53kI GAGCTC 2 cut(s) 75, 2526
Eco57I CTGAAG 3 cut(s) 302, 1082, 1636
EcoICRI GAGCTC 2 cut(s) 75, 2526
EcoNI CCTNNNNNAGG 1 cut(s) 2059
EcoO109I RGGNCCY 2 cut(s) 902, 1594
EcoRI GAATTC 1 cut(s) 2396
EcoRII CCWGG 3 cut(s) 158, 986, 1911
EcoRV GATATC 2 cut(s) 1295, 2188
EcoT14I CCWWGG 7 cut(s) 386, 621, 1339, 1442, 1486, 1781, 2156
EcoT22I ATGCAT 1 cut(s) 118
EcoT38I GRGCYC 3 cut(s) 77, 1597, 2528
ErhI CCWWGG 7 cut(s) 386, 621, 1339, 1442, 1486, 1781, 2156
Esp3I CGTCTC 1 cut(s) 587
FalI AAGNNNNNCTT 2 cut(s) 1240, 1272
FaqI GGGAC 1 cut(s) 419
FauNDI CATATG 1 cut(s) 2473
FbaI TGATCA 2 cut(s) 2703, 2721
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 5 cut(s) 44, 47, 196, 810, 1898
FokI GGATG 7 cut(s) 218, 815, 970, 1372, 1498, 1873, 2625
FriOI GRGCYC 3 cut(s) 77, 1597, 2528
Fsp4HI GCNGC 5 cut(s) 44, 47, 196, 810, 1898
GluI GCNGC 5 cut(s) 44, 47, 196, 810, 1898
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 1067
HaeIII GGCC 5 cut(s) 626, 1422, 1492, 1595, 2657
HapII CCGG 1 cut(s) 2487
HincII GTYRAC 3 cut(s) 1254, 1450, 2044
HindII GTYRAC 3 cut(s) 1254, 1450, 2044
HindIII AAGCTT 1 cut(s) 2169
HpaI GTTAAC 1 cut(s) 1254
HpaII CCGG 1 cut(s) 2487
HphI GGTGA 4 cut(s) 305, 385, 1231, 1554
Hpy166II GTNNAC 8 cut(s) 36, 313, 965, 1254, 1450, 1556, 2044, 2441
Hpy8I GTNNAC 8 cut(s) 36, 313, 965, 1254, 1450, 1556, 2044, 2441
HpyAV CCTTC 6 cut(s) 326, 507, 2201, 2467, 2562, 2728
HpyCH4III ACNGT 2 cut(s) 453, 1228
HpyCH4IV ACGT 2 cut(s) 32, 2699
HpyF10VI GCNNNNNNNGC 4 cut(s) 1217, 1318, 2443, 2654
HpySE526I ACGT 2 cut(s) 32, 2699
Ksp22I TGATCA 2 cut(s) 2703, 2721
KspAI GTTAAC 1 cut(s) 1254
LmnI GCTCC 2 cut(s) 299, 1309
Lsp1109I GCAGC 3 cut(s) 58, 182, 796
LweI GCATC 7 cut(s) 103, 125, 1308, 1517, 1794, 2079, 2603
MaeII ACGT 2 cut(s) 32, 2699
MaeIII GTNAC 5 cut(s) 218, 465, 665, 702, 2250
MbiI CCGCTC 1 cut(s) 1116
MfeI CAATTG 1 cut(s) 1763
MflI RGATCY 4 cut(s) 530, 742, 1175, 2500
MhlI GDGCHC 5 cut(s) 77, 1376, 1597, 2528, 2607
MlsI TGGCCA 2 cut(s) 626, 2657
MluNI TGGCCA 2 cut(s) 626, 2657
MlyI GAGTC 5 cut(s) 441, 970, 1474, 1762, 2242
MmeI TCCRAC 3 cut(s) 312, 1500, 2674
Mox20I TGGCCA 2 cut(s) 626, 2657
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 2 cut(s) 626, 2657
MseI TTAA 7 cut(s) 474, 560, 768, 1253, 2121, 2133, 2256
MslI CAYNNNNRTG 1 cut(s) 1211
Msp20I TGGCCA 2 cut(s) 626, 2657
MspA1I CMGCKG 3 cut(s) 1211, 2280, 2380
MspI CCGG 1 cut(s) 2487
MspR9I CCNGG 4 cut(s) 160, 988, 1913, 2487
MunI CAATTG 1 cut(s) 1763
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 3 cut(s) 160, 988, 1913
MvnI CGCG 1 cut(s) 2437
MwoI GCNNNNNNNGC 4 cut(s) 1217, 1318, 2443, 2654
NciI CCSGG 1 cut(s) 2487
NcoI CCATGG 2 cut(s) 1339, 1486
NdeI CATATG 1 cut(s) 2473
NlaIV GGNNCC 3 cut(s) 532, 837, 1595
NmuCI GTSAC 4 cut(s) 218, 465, 665, 2250
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 1 cut(s) 1483
NspV TTCGAA 1 cut(s) 1681
OliI CACNNNNGTG 1 cut(s) 1211
PagI TCATGA 1 cut(s) 61
PaqCI CACCTGC 1 cut(s) 1155
PciI ACATGT 1 cut(s) 1479
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 1222
PfoI TCCNGGA 2 cut(s) 158, 2485
PkrI GCNGC 5 cut(s) 45, 48, 197, 811, 1899
PleI GAGTC 5 cut(s) 440, 969, 1473, 1761, 2241
PpsI GAGTC 5 cut(s) 440, 969, 1473, 1761, 2241
Ppu21I YACGTR 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 902
PscI ACATGT 1 cut(s) 1479
PshAI GACNNNNGTC 1 cut(s) 1817
PshBI ATTAAT 1 cut(s) 2121
PsiI TTATAA 1 cut(s) 1032
Psp124BI GAGCTC 2 cut(s) 77, 2528
Psp1406I AACGTT 1 cut(s) 2699
Psp5II RGGWCCY 1 cut(s) 902
Psp6I CCWGG 3 cut(s) 158, 986, 1911
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 3 cut(s) 158, 986, 1911
PspN4I GGNNCC 3 cut(s) 532, 837, 1595
PspOMI GGGCCC 1 cut(s) 1593
PspPI GGNCC 9 cut(s) 902, 974, 1078, 1490, 1593, 1594, 1819, 2426, 2441
PspPPI RGGWCCY 1 cut(s) 902
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 4 cut(s) 530, 742, 1175, 2500
PvuII CAGCTG 2 cut(s) 1211, 2380
RsaI GTAC 6 cut(s) 35, 958, 1016, 1225, 1350, 2325
RsaNI GTAC 6 cut(s) 34, 957, 1015, 1224, 1349, 2324
RseI CAYNNNNRTG 1 cut(s) 1211
SacI GAGCTC 2 cut(s) 77, 2528
SaqAI TTAA 7 cut(s) 474, 560, 768, 1253, 2121, 2133, 2256
SatI GCNGC 5 cut(s) 44, 47, 196, 810, 1898
Sau96I GGNCC 9 cut(s) 902, 974, 1078, 1490, 1593, 1594, 1819, 2426, 2441
ScaI AGTACT 2 cut(s) 1225, 2325
SchI GAGTC 5 cut(s) 441, 970, 1474, 1762, 2242
ScrFI CCNGG 4 cut(s) 160, 988, 1913, 2487
SduI GDGCHC 5 cut(s) 77, 1376, 1597, 2528, 2607
SfaNI GCATC 7 cut(s) 103, 125, 1308, 1517, 1794, 2079, 2603
SfuI TTCGAA 1 cut(s) 1681
SinI GGWCC 6 cut(s) 902, 974, 1078, 1819, 2426, 2441
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 7 cut(s) 171, 1462, 1618, 1735, 1808, 2191, 2684
SmoI CTYRAG 7 cut(s) 171, 1462, 1618, 1735, 1808, 2191, 2684
SnaBI TACGTA 1 cut(s) 33
SstI GAGCTC 2 cut(s) 77, 2528
StyD4I CCNGG 4 cut(s) 158, 986, 1911, 2485
StyI CCWWGG 7 cut(s) 386, 621, 1339, 1442, 1486, 1781, 2156
TaaI ACNGT 2 cut(s) 453, 1228
TaiI ACGT 2 cut(s) 35, 2702
TatI WGTACW 2 cut(s) 1223, 2323
TauI GCSGC 2 cut(s) 46, 1900
Tru1I TTAA 7 cut(s) 474, 560, 768, 1253, 2121, 2133, 2256
Tru9I TTAA 7 cut(s) 474, 560, 768, 1253, 2121, 2133, 2256
TscAI CASTG 5 cut(s) 668, 1500, 1572, 1643, 1660
TseFI GTSAC 4 cut(s) 218, 465, 665, 2250
TseI GCWGC 3 cut(s) 46, 195, 809
Tsp45I GTSAC 4 cut(s) 218, 465, 665, 2250
TspDTI ATGAA 6 cut(s) 580, 1248, 1542, 1685, 2235, 2460
TspGWI ACGGA 4 cut(s) 293, 575, 1091, 2680
TspRI CASTG 5 cut(s) 668, 1500, 1572, 1643, 1660
VpaK11BI GGWCC 6 cut(s) 902, 974, 1078, 1819, 2426, 2441
VspI ATTAAT 1 cut(s) 2121
XagI CCTNNNNNAGG 1 cut(s) 2059
XbaI TCTAGA 1 cut(s) 874
XceI RCATGY 1 cut(s) 1483
XcmI CCANNNNNNNNNTGG 3 cut(s) 746, 984, 2137
XmiI GTMKAC 1 cut(s) 964
ZrmI AGTACT 2 cut(s) 1225, 2325
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.