Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000598

Physical Location & Seq

Genomic Coordinates Reverse (-)

56010690 .. 56011940

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG411000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAACGTTCTGCTCCGGGAGTATGGGAATTGAAACGTCGTCTTCAGTTATCAGATAAAGTTCTTACTCCCTCGTCTCGTCCTCCCTCTGAGCTATTGTACCAGAAGAAAATGGAACATCCGTTTAAGTTGTTATTCCAGGAGAAAACGGAACATTCTGACCTTGGAGAACAGGAACCGAATGATGAACAATCCCCAGATAATATTCTTGCTCCATTATATCATCCTCCCTATGAGCTATTGTTTCAGGGCTCTTTCAAAAAGGCCAAACGTACTGCTTCTGCCGAGGACAAATGGCTCCTCGTGAACTTGCAATCGACTAAGGAATTCAGCTCACATCTGATTAATCAAGACACCTGGGCTAATGAAGCTGTCTCGAAAATCATCAGCACTAATTTTATCTTCTGGCAGGCGTATGATGATTCAAATGAAGTCAAGAAGATTTGCAGATTCTACAACTTGGTATATACACCTGTAGTGCTTATCATTGACCCCATAAATGGTGAGAATATGCGTTCGTGGTATGGAATGGTTCAACCAGAACGTCTGCTGGAGGATCTGTTAGTACCATTTTTGGAAAATAGCCCCAAGGATCACCATCATCCAGGAGAAGAAAGTTCTCAGCCTCAGCCAGAGGAAAGTGAAGATGATTCGGTTGGTGACAAAACTGATGAAGAAGATGAGGAATTGCAGTGGGCATTGGAAGCTTCCATGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0030674 GO:0032182 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0060090 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_7 UBA_4 UBX

Protein Analysis

240

Amino Acids

27.83

Weight (kDa)

4.73

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_7	PF13899	85 - 165	2e-13	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09620
fragaria_vesca	FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica	MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica	Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis	pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis	RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata	RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora	Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa	Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha	Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana	Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	2 cut(s)	564, 600
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	3 cut(s)	101, 274, 567
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	34, 259, 426, 536
AjnI	CCWGG	3 cut(s)	138, 356, 604
AluBI	AGCT	5 cut(s)	94, 238, 333, 371, 707
AluI	AGCT	5 cut(s)	94, 238, 333, 371, 707
Alw26I	GTCTC	2 cut(s)	81, 379
AlwI	GGATC	2 cut(s)	564, 600
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	515, 587, 671
BanII	GRGCYC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	627
BccI	CCATC	1 cut(s)	606
BciT130I	CCWGG	3 cut(s)	140, 358, 606
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	81, 379
BfmI	CTRYAG	1 cut(s)	474
Bme1390I	CCNGG	4 cut(s)	18, 140, 358, 606
BmiI	GGNNCC	2 cut(s)	177, 299
BmrFI	CCNGG	4 cut(s)	18, 140, 358, 606
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	4 cut(s)	163, 285, 357, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	140, 358, 606
BseDI	CCNNGG	4 cut(s)	163, 285, 357, 588
BseGI	GGATG	3 cut(s)	118, 223, 601
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	81, 635, 641
BseRI	GAGGAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	81, 379
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	556, 592
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	3 cut(s)	82, 634, 640
BspLI	GGNNCC	2 cut(s)	177, 299
BspPI	GGATC	2 cut(s)	564, 600
BssECI	CCNNGG	4 cut(s)	163, 285, 357, 588
BssMI	GATC	2 cut(s)	556, 592
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	163, 588
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	140, 358, 606
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	90, 321, 621, 627
BstF5I	GGATG	3 cut(s)	118, 223, 601
BstKTI	GATC	2 cut(s)	559, 595
BstMAI	GTCTC	2 cut(s)	81, 379
BstMBI	GATC	2 cut(s)	556, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 704
BstNI	CCWGG	3 cut(s)	140, 358, 606
BstSCI	CCNGG	4 cut(s)	16, 138, 356, 604
BstSFI	CTRYAG	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	118, 223, 601
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	1 cut(s)	698
Cac8I	GCNNGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	100, 273, 566
CviAII	CATG	2 cut(s)	712, 720
CviQI	GTAC	3 cut(s)	100, 273, 566
DdeI	CTNAG	4 cut(s)	90, 321, 621, 627
DpnI	GATC	2 cut(s)	558, 594
DpnII	GATC	2 cut(s)	556, 592
Eco130I	CCWWGG	2 cut(s)	163, 588
Eco24I	GRGCYC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	138, 356, 604
EcoT14I	CCWWGG	2 cut(s)	163, 588
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	163, 588
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	715, 723
FatI	CATG	2 cut(s)	711, 719
FokI	GGATG	3 cut(s)	105, 210, 588
FriOI	GRGCYC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	2 cut(s)	715, 723
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	422, 450, 650
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	515, 587, 671
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	55, 91, 160, 342
Hpy188III	TCNNGA	4 cut(s)	304, 350, 376, 436
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	42
HpyCH4IV	ACGT	4 cut(s)	7, 37, 271, 544
HpyCH4V	TGCA	3 cut(s)	313, 447, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 704
HpyF3I	CTNAG	4 cut(s)	90, 321, 621, 627
HpySE526I	ACGT	4 cut(s)	7, 37, 271, 544
Hsp92II	CATG	2 cut(s)	715, 723
Kzo9I	GATC	2 cut(s)	556, 592
LmnI	GCTCC	3 cut(s)	19, 217, 303
MaeII	ACGT	4 cut(s)	7, 37, 271, 544
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	2 cut(s)	558, 594
MboI	GATC	2 cut(s)	556, 592
MboII	GAAGA	8 cut(s)	35, 118, 394, 451, 623, 656, 686, 689
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	4 cut(s)	29, 326, 394, 686
MseI	TTAA	2 cut(s)	126, 345
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	4 cut(s)	18, 140, 358, 606
MvaI	CCWGG	3 cut(s)	140, 358, 606
MwoI	GCNNNNNNNGC	2 cut(s)	368, 704
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	556, 592
NlaIII	CATG	2 cut(s)	715, 723
NlaIV	GGNNCC	2 cut(s)	177, 299
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	422, 450, 650
PfoI	TCCNGGA	3 cut(s)	16, 138, 604
PshBI	ATTAAT	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	138, 356, 604
PspGI	CCWGG	3 cut(s)	138, 356, 604
PspN4I	GGNNCC	2 cut(s)	177, 299
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	3 cut(s)	101, 274, 567
RsaNI	GTAC	3 cut(s)	100, 273, 566
SaqAI	TTAA	2 cut(s)	126, 345
Sau3AI	GATC	2 cut(s)	556, 592
ScrFI	CCNGG	4 cut(s)	18, 140, 358, 606
SduI	GDGCHC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	29, 326, 394, 686
SspI	AATATT	1 cut(s)	205
StyD4I	CCNGG	4 cut(s)	16, 138, 356, 604
StyI	CCWWGG	2 cut(s)	163, 588
TaiI	ACGT	4 cut(s)	10, 40, 274, 547
TaqI	TCGA	2 cut(s)	317, 377
TasI	AATT	4 cut(s)	29, 326, 394, 686
TfiI	GAWTC	3 cut(s)	422, 450, 650
Tru1I	TTAA	2 cut(s)	126, 345
Tru9I	TTAA	2 cut(s)	126, 345
TscAI	CASTG	1 cut(s)	698
TseFI	GTSAC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	201, 381, 444, 687
TspGWI	ACGGA	2 cut(s)	111, 164
TspRI	CASTG	1 cut(s)	698
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.