RLG00000028251

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
20550182 .. 20550751
570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028251

Sequence Viewer

Length: 342 bp
ATGGCGACTCTCTCTCGTCAGATCTCGGTGGTGTTCCTTCGACGATGGCTGTGTGAGTGTGGCGTCCTTAATCTCGGTGAAACGACGTCACTCTATGGACCGAAGAGTGGTACAGAGCGACGTCGTTTCACCATAGACTATGGTGATAGCGTCGGCGGCGAAGATCCGATCGGCTTCGCGACCCTGAATTCCGATGGCTTGCCGGAATCAAATATTGCTAAGGAGATGAAGATGAAGTTAATAAGGAGAGACCGTCTTCGAAAGATTGAGGAAGACGCTCAAAGACGGTGGGAGGAGACGCAAGTTTTCAGGGCTGAACCCGGTGAAAGTCCTCCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.89

Weight (kDa)

6.34

Isoelectric Point (pI)

89.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 89, 124
AccII CGCG 1 cut(s) 179
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 3 cut(s) 63, 86, 121
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 243, 290
AlwI GGATC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 4 cut(s) 89, 121, 155, 335
AsuII TTCGAA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 248, 279
BccI CCATC 2 cut(s) 39, 188
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 243, 290
BglII AGATCT 1 cut(s) 21
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 248, 279
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 321
BsaHI GRCGYC 3 cut(s) 63, 86, 121
BsaI GGTCTC 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 203, 321
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 243, 290
BsmBI CGTCTC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 21, 163, 168
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 1 cut(s) 156
BspFNI CGCG 1 cut(s) 179
BspPI GGATC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 243
BssMI GATC 3 cut(s) 21, 163, 168
BssNI GRCGYC 3 cut(s) 63, 86, 121
Bst4CI ACNGT 2 cut(s) 254, 288
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 3 cut(s) 63, 86, 121
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 3 cut(s) 24, 166, 171
BstMAI GTCTC 2 cut(s) 243, 290
BstMBI GATC 3 cut(s) 21, 163, 168
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 1 cut(s) 179
BstV2I GAAGAC 2 cut(s) 248, 279
BstX2I RGATCY 2 cut(s) 21, 163
BstYI RGATCY 2 cut(s) 21, 163
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 4 cut(s) 52, 139, 284, 307
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviJI RGCY 4 cut(s) 49, 174, 198, 314
CviKI_1 RGCY 4 cut(s) 49, 174, 198, 314
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 23, 165, 170
DpnII GATC 3 cut(s) 21, 163, 168
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 290
FaiI YATR 3 cut(s) 96, 134, 141
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 157
HapII CCGG 2 cut(s) 203, 321
HgaI GACGC 4 cut(s) 52, 139, 284, 307
Hin1I GRCGYC 3 cut(s) 63, 86, 121
HinfI GANTC 2 cut(s) 7, 206
HpaII CCGG 2 cut(s) 203, 321
HphI GGTGA 4 cut(s) 89, 121, 155, 335
Hpy188I TCNGA 3 cut(s) 21, 168, 193
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 5 cut(s) 45, 88, 123, 126, 155
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 254, 288
HpyCH4IV ACGT 2 cut(s) 86, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 2 cut(s) 86, 121
Hsp92I GRCGYC 3 cut(s) 63, 86, 121
Kzo9I GATC 3 cut(s) 21, 163, 168
LpnPI CCDG 4 cut(s) 197, 216, 295, 334
MaeII ACGT 2 cut(s) 86, 121
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 23, 165, 170
MboI GATC 3 cut(s) 21, 163, 168
MboII GAAGA 5 cut(s) 115, 173, 241, 248, 284
MflI RGATCY 2 cut(s) 21, 163
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 262, 286, 342
MseI TTAA 2 cut(s) 69, 239
MspI CCGG 2 cut(s) 203, 321
MspR9I CCNGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 321
NdeII GATC 3 cut(s) 21, 163, 168
NmuCI GTSAC 1 cut(s) 87
NruI TCGCGA 1 cut(s) 179
NspV TTCGAA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 158
Ple19I CGATCG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 2 cut(s) 21, 163
PvuI CGATCG 1 cut(s) 171
RruI TCGCGA 1 cut(s) 179
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 69, 239
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 21, 163, 168
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 321
SetI ASST 2 cut(s) 89, 124
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 254, 288
TaiI ACGT 2 cut(s) 89, 124
TaqI TCGA 2 cut(s) 40, 259
TaqII GACCGA 1 cut(s) 115
TasI AATT 1 cut(s) 187
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 69, 239
Tru9I TTAA 2 cut(s) 69, 239
TseFI GTSAC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 242, 248
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 187
ZraI GACGTC 2 cut(s) 87, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.