Rorug01G0238700

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000598
Physical Location & Seq
Reverse (-)
34365867 .. 34366577
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0238700.1

Sequence Viewer

Length: 396 bp
ATGGCTTGTAGGGGTTCCACGGCAGTTGCTCTTATCATTCTCCTTGACATCATATTTTTCTCTCTGGTATCCTCTCACGAGGTTCCATGTCCTCCTACAAATCCTTCCTCTCCTCCCTCTTTTCCAAAGAAGCAAGCCAAGTGTCCCAGAGACACCCTCAAGTTCGGGGTCTGTGGGAGTTGGCTAGGATTGGTGACTGAGGTCGTCGGGACGAAACCCAGCAAGGAATGTTGCACCCTGATAAAGGGTCTGGCGGATCTTGAAGCTGCATTGTGTCTGTGTACTGCTATTAAGGCCAATGTACTGGGAATTGTCAAGCTCAAAGTGCCTGTTGCTATTAGCTTGCTTGTTAATGCTTGTGGGGGAAAGGTGCCCGAAGGCTTTGTATGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

131

Amino Acids

13.6

Weight (kDa)

8.72

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 43 - 130 1.5e-07 Probable lipid transfer
Hydrophob_seed PF14547 48 - 131 6.5e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 48 - 130 1.9e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 264
AfaI GTAC 2 cut(s) 283, 303
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 3 cut(s) 266, 319, 342
AluI AGCT 3 cut(s) 266, 319, 342
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 264
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 1 cut(s) 370
BauI CACGAG 1 cut(s) 77
BbvI GCAGC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 16, 84, 372
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BoxI GACNNNNGTC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 370
BslFI GGGAC 2 cut(s) 129, 223
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 129, 223
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 16, 84, 372
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 370
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 256
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 135, 344
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 242
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 293, 325
BstPAI GACNNNNGTC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 135, 344
Csp6I GTAC 2 cut(s) 282, 302
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 87
CviJI RGCY 8 cut(s) 5, 137, 184, 266, 296, 319, 342, 381
CviKI_1 RGCY 8 cut(s) 5, 137, 184, 266, 296, 319, 342, 381
CviQI GTAC 2 cut(s) 282, 302
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 242
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 53, 88, 388
FaqI GGGAC 2 cut(s) 129, 223
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 1 cut(s) 90
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 77, 208, 260
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 114, 371
HpyCH4V TGCA 2 cut(s) 234, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 325
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 50, 160, 232, 236, 251, 290, 342
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 1 cut(s) 309
MnlI CCTC 8 cut(s) 73, 82, 102, 118, 123, 127, 167, 193
MseI TTAA 2 cut(s) 291, 351
MwoI GCNNNNNNNGC 2 cut(s) 293, 325
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 3 cut(s) 16, 84, 372
NmuCI GTSAC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 218
PspN4I GGNNCC 3 cut(s) 16, 84, 372
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 283, 303
RsaNI GTAC 2 cut(s) 282, 302
SaqAI TTAA 2 cut(s) 291, 351
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 375
SetI ASST 6 cut(s) 84, 204, 268, 321, 344, 372
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 309
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 185
TasI AATT 1 cut(s) 309
TatI WGTACW 2 cut(s) 281, 301
Tru1I TTAA 2 cut(s) 291, 351
Tru9I TTAA 2 cut(s) 291, 351
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 242
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.