Rorug01G0377200

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
49067416 .. 49067960
545 bp
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UTR
Exon/CDS
Intron
Rorug01G0377200.1

Sequence Viewer

Length: 531 bp
ATGGCTTTGAGAGGCAGTATAATGTTCCTTTTGGTGGCGATGAATCTTTGCGGTGCTTGTTCTGGTGCTGGTGCTGTTTACAAAGTCGGCGGCCCGGATGGTTGGATAGTAGGTGTTGATTATAACCAGTGGTCCTCATCAAAAGAGTTTCGCGTAGGCGATGGTCTTTTCTTTTCTTACAATAAGCAATACCACAATGTGGTTCAAGTATCTGAGCAAGGTTTCAAATCCTGCAACTCCAGCTCTCCCATCGCAGCTTATAGTTCCGGTTCAGACACGATCACGCTTGAAAGGCCTGGCCACTATTACTTTCTTTGTGGTGCTCCTGGTCATTGTGAAGACGGACAGAAGGTCGACGTTCAGGTCAGCCGTCCCATACCCGACAATCCAAGTCCGGCACCTTCTGGATTGTCTTCTCCTTCAACTCCTCATCCTGAAGAGAGGCCACCACACTCTGCGGCTCTGACCAATGCTCCAAAGCTTGCCTTGGCTGTCTTCGCTTCTGTGCTGGCATGGTGTTTTCTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

176

Amino Acids

18.71

Weight (kDa)

6.17

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 116 1.1e-29 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AasI GACNNNNNNGTC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 199
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 153
AciI CCGC 3 cut(s) 51, 90, 458
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 34, 199
AgsI TTSAA 4 cut(s) 206, 226, 290, 423
AhdI GACNNNNNGTC 1 cut(s) 350
AjnI CCWGG 2 cut(s) 295, 325
AluBI AGCT 3 cut(s) 243, 257, 481
AluI AGCT 3 cut(s) 243, 257, 481
Alw21I GWGCWC 1 cut(s) 325
AoxI GGCC 4 cut(s) 91, 293, 298, 443
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 92, 132
AsuC2I CCSGG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 300
BanI GGYRCC 1 cut(s) 397
BbsI GAAGAC 3 cut(s) 345, 405, 487
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 266
BccI CCATC 3 cut(s) 92, 155, 257
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 2 cut(s) 297, 327
BcnI CCSGG 1 cut(s) 95
BisI GCNGC 3 cut(s) 91, 255, 459
BlsI GCNGC 3 cut(s) 92, 256, 460
Bme1390I CCNGG 3 cut(s) 95, 297, 327
Bme18I GGWCC 1 cut(s) 132
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 92, 132
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 3 cut(s) 95, 297, 327
BpiI GAAGAC 3 cut(s) 345, 405, 487
BpmI CTGGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 199
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 297, 327
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 103, 430
BseLI CCNNNNNNNGG 2 cut(s) 34, 199
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 93, 295, 300, 445
BshNI GGYRCC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 3 cut(s) 95, 267, 395
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 34, 199
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 4 cut(s) 93, 295, 300, 445
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 3 cut(s) 51, 90, 458
BspANI GGCC 4 cut(s) 93, 295, 300, 445
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 297, 327
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 483, 510
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 103, 430
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 3 cut(s) 240, 292, 497
BstNI CCWGG 2 cut(s) 297, 327
BstSCI CCNGG 3 cut(s) 93, 295, 325
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 3 cut(s) 345, 405, 487
BsuRI GGCC 4 cut(s) 93, 295, 300, 445
BtgZI GCGATG 3 cut(s) 53, 174, 235
BtsCI GGATG 2 cut(s) 103, 430
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 483, 510
Cfr13I GGNCC 2 cut(s) 92, 132
CviAII CATG 1 cut(s) 513
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DraIII CACNNNGTG 1 cut(s) 199
DrdI GACNNNNNNGTC 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 432
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 295, 325
EcoT14I CCWWGG 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 1 cut(s) 516
FaiI YATR 5 cut(s) 20, 123, 261, 377, 514
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 357
FatI CATG 1 cut(s) 512
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 91, 255, 459
FokI GGATG 2 cut(s) 110, 417
Fsp4HI GCNGC 3 cut(s) 91, 255, 459
GluI GCNGC 3 cut(s) 91, 255, 459
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 4 cut(s) 93, 295, 300, 445
HapII CCGG 3 cut(s) 95, 267, 395
Hin1II CATG 1 cut(s) 516
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 1 cut(s) 43
HpaII CCGG 3 cut(s) 95, 267, 395
Hpy166II GTNNAC 2 cut(s) 79, 355
Hpy188I TCNGA 3 cut(s) 214, 274, 465
Hpy188III TCNNGA 2 cut(s) 405, 434
Hpy8I GTNNAC 2 cut(s) 79, 355
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 343, 411, 429
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 292, 497
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 516
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 2 cut(s) 328, 478
Lsp1109I GCAGC 1 cut(s) 266
MaeII ACGT 1 cut(s) 357
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 4 cut(s) 350, 405, 449, 487
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 1 cut(s) 526
MluNI TGGCCA 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 4 cut(s) 5, 145, 435, 438
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 3 cut(s) 95, 267, 395
MspR9I CCNGG 3 cut(s) 95, 297, 327
MvaI CCWGG 2 cut(s) 297, 327
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 240, 292, 497
NciI CCSGG 1 cut(s) 95
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 516
NlaIV GGNNCC 1 cut(s) 399
PceI AGGCCT 1 cut(s) 295
PfeI GAWTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 3 cut(s) 92, 256, 460
PsiI TTATAA 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 295, 325
PspGI CCWGG 2 cut(s) 295, 325
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 92, 132
SalI GTCGAC 1 cut(s) 353
SatI GCNGC 3 cut(s) 91, 255, 459
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 92, 132
ScrFI CCNGG 3 cut(s) 95, 297, 327
SduI GDGCHC 1 cut(s) 325
SetI ASST 9 cut(s) 115, 223, 245, 259, 354, 360, 366, 403, 483
SinI GGWCC 1 cut(s) 132
Sse9I AATT 1 cut(s) 526
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 3 cut(s) 51, 90, 458
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 93, 295, 325
StyI CCWWGG 1 cut(s) 486
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 526
TauI GCSGC 2 cut(s) 93, 461
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 134
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.