Rh4DG406300

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
62012868 .. 62013170
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG406300.1

Sequence Viewer

Length: 303 bp
ATGCAGCTTCTGTTAAGAGTAGTGCAAGATTGTTCGTGGATTTATAGTTACAAACAGGGAGAAAAGGTAATGGCAGTCGAAGGTGGGAAGAAATCTAGGAGAGATCGTCTCAAAGAGATTGAGGAGAAGGCACAAAAGTTGTGGGAAGAAAATGGTGTTTTCAGGGCTGAATCTTGTGAAAAGCGACCTGAACCAGGGGAGAAGTTCTTTGGGAACTTCCCTCTTCCTTACATGAATGGTTTTTTGCATGTAGGGCATGCATTCTCACTCTCGAAGCTGCTAGTTTTCTGCTCGTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.64

Weight (kDa)

8.82

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 7, 277
AluI AGCT 2 cut(s) 7, 277
Alw26I GTCTC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 4, 277
BbvI GCAGC 2 cut(s) 16, 264
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 96, 281
BisI GCNGC 2 cut(s) 5, 278
BlsI GCNGC 2 cut(s) 6, 279
Bme1390I CCNGG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 16, 264
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 258
BstENI CCTNNNNNAGG 1 cut(s) 192
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 251, 260
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 16, 264
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 3 cut(s) 232, 248, 257
CviJI RGCY 3 cut(s) 7, 167, 277
CviKI_1 RGCY 3 cut(s) 7, 167, 277
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 235, 251, 260
FaiI YATR 5 cut(s) 45, 233, 249, 258, 301
FatI CATG 3 cut(s) 231, 247, 256
Fnu4HI GCNGC 2 cut(s) 5, 278
Fsp4HI GCNGC 2 cut(s) 5, 278
FspBI CTAG 2 cut(s) 96, 281
GluI GCNGC 2 cut(s) 5, 278
Hin1II CATG 3 cut(s) 235, 251, 260
HinfI GANTC 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 74, 121
HpyCH4V TGCA 4 cut(s) 4, 25, 247, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
Hsp92II CATG 3 cut(s) 235, 251, 260
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 41, 148, 180, 201, 207
Lsp1109I GCAGC 2 cut(s) 16, 264
MaeI CTAG 2 cut(s) 96, 281
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 3 cut(s) 100, 158, 215
MnlI CCTC 2 cut(s) 115, 231
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 1 cut(s) 103
NlaIII CATG 3 cut(s) 235, 251, 260
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 2 cut(s) 251, 260
PaeI GCATGC 1 cut(s) 260
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 6, 279
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 5, 278
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 195
SetI ASST 5 cut(s) 9, 69, 85, 190, 279
SphI GCATGC 1 cut(s) 260
SspMI CTAG 2 cut(s) 96, 281
StyD4I CCNGG 1 cut(s) 193
TaqI TCGA 2 cut(s) 78, 272
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 4, 277
TspDTI ATGAA 2 cut(s) 248, 288
XagI CCTNNNNNAGG 1 cut(s) 192
XceI RCATGY 2 cut(s) 251, 260
XspI CTAG 2 cut(s) 96, 281
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.