Prupe.1G582000_v2.0.a1

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000598
Physical Location & Seq
Forward (+)
47276558 .. 47281882
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G582000.1

Sequence Viewer

Length: 3270 bp
ATGGCAGCTGAAGGTGGTAAGAGCTTTGCCAGGAGAGACCATCTCCTACAGATTGAGACAAAGGTTCGACAGTGGTGGGAAGAGAAAGATGTTTTCAGGGCTGAATCTTGTGAAAAGCCTCCTGAACCAGGGGAGAAGTTCTTTGGAAACTTCCCGTTTCCTTACATGAATGGTTTTTTGCATCTTGGACATGCATTCTCACTCTCCAAGCTAGAGTTTGCTGCAGCTTACCATAGGCTAAGAGGCGCCAATGTGCTTTTGCCTTTTGGTTTCCACTGCACTGGCATGCCCATCAAAGCATCAGCTGATAAACTTGCAAGAGAGATTCAAAAGTTTGGTAACCCGCCAGTTTTTACCAGTGAATTGGAACAAGAGAACCAGGAAGTGGAAGCTGAAGCAGAGGATGCAAATAATGGTGCACCTCCAGATAAGTTCAAGGGAAAGAAGTCGAAGGCTGCATCAAAATCAAGTGGCCAAGCTTACCAATGGGAAATCATGCGTAGTTTTGGCCTCTCTGATAGTGAGATATGCAAATTCCAAAATCCTTACAACTGGTTGACATTCTTTCCTCCATTGGCAGTGGAAGACCTCAAGGCTTTTGGATTGGGATGTGACTGGAGGCGCTCGTTTATTACTACAGACGTGAACCCGTTTTTTGATGCCTTTGTGAGGTGGCAGGTGAGGAAATTAAAATCCATGGGTAAGATTGTGAAAGATGTCCGTTACACAATATACTCTCCATTGGATGGGCAGCCATGTGCAGATCATGATAGGGCATCTGGCGAAGGAGTTCAGCCCCAAGAATACACCATCATCAAAATGGAGGTGGTAGCACCTTTCCCGTCTAAATTGAAAGTGTTGGAGGGAAGGAAAGTGTTCCTTGCTGCAGCAACACTGAGACCTGAGACCATGTACGGACAAACAAATGCATGGGTATTGCCTGATGGGAAGTATGGAGCCTTTGAAATCAACGAAACAGATGTATTTATTCTTACACAGAGAGCAGCACTTAATCTTGCCTATCAGAAGTACTCTAGGGTCCCAGATAAACCTACTTGCTTGGTTGAGCTCACCGGTTATGATTTGATTGGCCTTCCATTGAAGTCTCCACATGCAATCAATCAGATTATTTATACTCTTCCTATGTTGACTGTCCTGACAGACAAAGGCACTGGGATAGTGACTAGTGTGCCTGCTGATTCTCCTGATGATTATATGGCCTTGCATGATTTAAAAGCAAAACCTGCTTTGAGGGAAAAATATGGTGTGAAGGATGAGTGGGTTATGCCCTTCGAGATTATCCCAATCATCAACATTCCTGAATTCGGAAATAAGGCTGCAGAGAAGGTCTGTGCAGATCTGAAAATCAAAAGCCAGAATGAGAAAGATAAGCTAGCAGAAGCCAAGAGGTTGACATACCTGAAAGGATTCACAGAAGGGACACTTATTGTTGGAGAATTCAATGGAAGGAAAGTCCAGGATGTGAAACCATTGATAAGGAGCAAGCTCATAGAGGCGAATGAGGCAATTGTGTATAGTGAACCTGAGAAGCGGGTGGTGTCACGATCGGGTGATGAATGTGTTGTGGCTCTTACGGATCAATGGTACATCACATATGGGGAACCCGAATGGAAAAAACTGGCTGAGGAGTGCTTGTCCAGCATGAATTTGTATTCTGACGAAACACGACATGGATTTGAACACACATTGGGTTGGTTGAATCAGTGGGCTTGTTCACGATCTTTTGGGCTTGGGACTCGGATTCCCTGGGATGAAGAATTCTTAGTTGAGTCATTGTCCGATTCAACCATTTACATGGCTTACTACACCATTGCGCACTTTTTACACAATGGAGACATGTATGGTTCCAGCAAATCTGCAATTAAACCTGGACAAATGACTGATGAGGTCTGGGAATATATTTTCTGTGATGGCCCATATCCTGAATCATCTGATATCTCGTCATTGATTCTTAATAAGATGAAGCAGGAGTTTGAATATTGGTATCCATTTGATATTCGAGTGTCTGGCAAGGATCTAATCCAAAATCATTTGACCTTCTGCATTTATAACCACACGGCAATTATGCCCAAAAAGCACTGGCCTCGTGGGTTTAGATGCAATGGGCACATCATGCTAAATTCTGAGAAGATGTCCAAGTCTACTGGGAATTTTAGGACCATTCGCCAGGCAATTGAGGAGTTTTCTGCTGATGCCACACGATTCTCATTGGCTGATGCTGGAGATGGTGTTGATGATGCAAATTTTGTATTTGAGACTGCAAATGCTGCTATCCTAAGGCTCACCAAAGAGATCGCATGGATGGAAGAAGTTTTAGCCACGGACTCTTCTTTGAGAATAGGTCCTCCTACTACTTATGCTGACAGGGTCTTTTTGAATGAGATAAATATCGCTGTGAACAGAACTGAGCAGAATTATCGGGATTACATGTTCCGCGGAGCCCTCAAGACTGGGTTTTATGATCTTCAAGCTGCCAGGGATGAGTACAGGTTTTCATGTGGTTCGGGGGGTATGAACCGTGAATTGGTGCTGCGTTTTATGGATGTGCAGACGCGTCTCATAACTCCAATCTGTCCACACTATGCAGAATACGTCTGGAGGGAACTTTTGAAGAAGGAAGGGTTTGTGGTAAATGCAGGATGGCCTGTGGCTGATGCTCCAGATCTGACCCTCCAGAGTTCCAATAAGTATTTGCAAGATTCCATTGTTTTAATGAGGAAGCTGTATGAAAAGCAAAGGTCAGGTTCAAAGAAAGCCAATAAGAAGGGTGCTCCAGTTACAGCGGTGACAGAAAACAAGCAGCTACCAATTGGCTTGATATATGTAAATGAGCAATTTGATGAATGGAAGGCTGAGTGTTTGAGGATACTACAAAGTAATTTTGACAGAGAGTCTTGCACTTTTGCTCCAGACAGGGTGATAATGGAGGCATTGCAGAGAAGTTCAATTGGTCAGACTAAAGATTTTAGACAAACCCAAAAGCTTTGTATGCCTTTCATGAAGATGAAGAAGGATCAGGCAGTTGCAATAGGGGCTCAGGCCTTAGACTTGAAGCTACCATTTGGAGAGATTGACATCCTTCGAGAGAACCTGGATTTAATTAAGAGACAAATCGGTCTTGAAGAGGTTGAAGTTTTGTCTGCTTCTGATCCTGATGCTCTTAATAAAGCTGGTTCACTTGTTAAATTGGTGGAGCAGAATCCTCCCTCCCCTGGAAGCCCGACTGCCATCTTCTTGTCCAGGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

1090

Amino Acids

123.46

Weight (kDa)

6.01

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2070
AarI CACCTGC 1 cut(s) 667
AasI GACNNNNNNGTC 1 cut(s) 3135
Acc16I TGCGCA 1 cut(s) 1836
Acc36I ACCTGC 2 cut(s) 667, 1252
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 2 cut(s) 385, 746
AccI GTMKAC 1 cut(s) 2162
AccII CGCG 2 cut(s) 2457, 2575
AciI CCGC 5 cut(s) 344, 1552, 2455, 2457, 2804
AclWI GGATC 4 cut(s) 1605, 2043, 3042, 3164
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 8 cut(s) 533, 1322, 1457, 1666, 1778, 2140, 2170, 2263
AcuI CTGAAG 2 cut(s) 30, 414
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 4 cut(s) 914, 1031, 1607, 2507
AfiI CCNNNNNNNGG 7 cut(s) 128, 385, 669, 746, 1325, 2545, 3233
AflIII ACRYGT 3 cut(s) 1857, 2448, 2573
AgeI ACCGGT 1 cut(s) 1073
AhdI GACNNNNNGTC 1 cut(s) 2911
AhlI ACTAGT 1 cut(s) 1184
AjiI CACGTC 1 cut(s) 643
AjuI GAANNNNNNNTTGG 2 cut(s) 2528, 2560
AloI GAACNNNNNNTCC 2 cut(s) 2435, 2467
Alw21I GWGCWC 3 cut(s) 421, 1071, 2794
Alw26I GTCTC 9 cut(s) 30, 50, 892, 899, 1110, 1848, 2270, 2582, 3121
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 4 cut(s) 1605, 2043, 3042, 3164
AoxI GGCC 8 cut(s) 472, 508, 1090, 1218, 1933, 2102, 2663, 3060
ApaLI GTGCAC 1 cut(s) 417
ApoI RAATTY 8 cut(s) 533, 1322, 1457, 1666, 1778, 2140, 2170, 2263
AsiGI ACCGGT 1 cut(s) 1073
Asp700I GAANNNNTTC 3 cut(s) 789, 875, 1427
AspLEI GCGC 3 cut(s) 248, 624, 1837
AspS9I GGNCC 4 cut(s) 1039, 1934, 2178, 2363
AsuHPI GGTGA 6 cut(s) 691, 1063, 1583, 2296, 2818, 2950
AsuNHI GCTAGC 1 cut(s) 1393
AvaII GGWCC 3 cut(s) 1039, 2178, 2363
AxyI CCTNAGG 1 cut(s) 2297
BaeGI GKGCMC 2 cut(s) 421, 2130
BalI TGGCCA 1 cut(s) 474
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 3 cut(s) 1071, 2464, 3058
BauI CACGAG 1 cut(s) 2106
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 3 cut(s) 421, 1071, 2794
BbvCI CCTCAGC 1 cut(s) 1644
BceAI ACGGC 1 cut(s) 2094
BcgI CGANNNNNNTGC 4 cut(s) 2087, 2121, 2420, 2454
BciVI GTATCC 2 cut(s) 2016, 2880
BcoDI GTCTC 9 cut(s) 30, 50, 892, 899, 1110, 1848, 2270, 2582, 3121
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 4 cut(s) 212, 1035, 1185, 1394
BfmI CTRYAG 5 cut(s) 47, 222, 636, 885, 1338
BfoI RGCGCY 2 cut(s) 249, 625
BfuAI ACCTGC 2 cut(s) 667, 1252
BfuI GTATCC 2 cut(s) 2016, 2880
BglII AGATCT 2 cut(s) 1357, 2683
BmcAI AGTACT 1 cut(s) 1031
Bme18I GGWCC 3 cut(s) 1039, 2178, 2363
BmeRI GACNNNNNGTC 1 cut(s) 2911
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 4 cut(s) 1039, 1934, 2178, 2363
BmiI GGNNCC 7 cut(s) 247, 958, 1040, 1041, 1623, 1867, 2461
BmrI ACTGGG 3 cut(s) 1182, 2175, 2481
BmtI GCTAGC 1 cut(s) 1397
BmuI ACTGGG 3 cut(s) 1182, 2175, 2481
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpmI CTGGAG 8 cut(s) 408, 637, 2262, 2638, 2664, 2678, 2778, 2913
Bpu10I CCTNAGC 2 cut(s) 1644, 3057
BpuEI CTTGAG 2 cut(s) 575, 2450
BsaBI GATNNNNATC 2 cut(s) 2408, 3095
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 3 cut(s) 30, 892, 899
BsaJI CCNNGG 8 cut(s) 128, 696, 1766, 1767, 2340, 2455, 2496, 3232
BsaWI WCCGGW 1 cut(s) 1073
BsaXI ACNNNNNCTCC 6 cut(s) 1640, 1670, 2235, 2265, 2911, 2941
Bsc4I CCNNNNNNNGG 7 cut(s) 128, 385, 669, 746, 1325, 2545, 3233
Bse118I RCCGGY 1 cut(s) 1073
Bse21I CCTNAGG 1 cut(s) 2297
Bse3DI GCAATG 3 cut(s) 1830, 2128, 2951
Bse8I GATNNNNATC 2 cut(s) 2408, 3095
BseDI CCNNGG 8 cut(s) 128, 696, 1766, 1767, 2340, 2455, 2496, 3232
BseJI GATNNNNATC 2 cut(s) 2408, 3095
BseLI CCNNNNNNNGG 7 cut(s) 128, 385, 669, 746, 1325, 2545, 3233
BseMI GCAATG 3 cut(s) 1830, 2128, 2951
BseMII CTCAG 8 cut(s) 887, 894, 1536, 1635, 2136, 2418, 2865, 3071
BseRI GAGGAG 2 cut(s) 1661, 2213
BseSI GKGCMC 2 cut(s) 421, 2130
BsgI GTGCAG 4 cut(s) 262, 780, 1374, 2588
Bsh1236I CGCG 2 cut(s) 2457, 2575
Bsh1285I CGRYCG 1 cut(s) 1568
BshFI GGCC 8 cut(s) 474, 510, 1092, 1220, 1935, 2104, 2665, 3062
BshNI GGYRCC 1 cut(s) 245
BshTI ACCGGT 1 cut(s) 1073
BsiEI CGRYCG 1 cut(s) 1568
BsiHKAI GWGCWC 3 cut(s) 421, 1071, 2794
BsiSI CCGG 1 cut(s) 1074
BslFI GGGAC 3 cut(s) 1025, 1453, 1768
BslI CCNNNNNNNGG 7 cut(s) 128, 385, 669, 746, 1325, 2545, 3233
BsmAI GTCTC 9 cut(s) 30, 50, 892, 899, 1110, 1848, 2270, 2582, 3121
BsmBI CGTCTC 1 cut(s) 2582
BsmFI GGGAC 3 cut(s) 1025, 1453, 1768
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 8 cut(s) 474, 510, 1092, 1220, 1935, 2104, 2665, 3062
Bso31I GGTCTC 3 cut(s) 30, 892, 899
Bsp1286I GDGCHC 6 cut(s) 421, 1071, 2130, 2464, 2794, 3058
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 5 cut(s) 344, 1552, 2455, 2457, 2804
BspANI GGCC 8 cut(s) 474, 510, 1092, 1220, 1935, 2104, 2665, 3062
BspCNI CTCAG 8 cut(s) 888, 895, 1537, 1636, 2137, 2419, 2866, 3070
BspFNI CGCG 2 cut(s) 2457, 2575
BspHI TCATGA 2 cut(s) 766, 3018
BspLI GGNNCC 7 cut(s) 247, 958, 1040, 1041, 1623, 1867, 2461
BspMAI CTGCAG 3 cut(s) 226, 889, 1342
BspMI ACCTGC 2 cut(s) 667, 1252
BspOI GCTAGC 1 cut(s) 1397
BspPI GGATC 4 cut(s) 1605, 2043, 3042, 3164
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 3 cut(s) 30, 892, 899
BsrDI GCAATG 3 cut(s) 1830, 2128, 2951
BsrFI RCCGGY 1 cut(s) 1073
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 8 cut(s) 128, 696, 1766, 1767, 2340, 2455, 2496, 3232
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 2106
BssT1I CCWWGG 1 cut(s) 696
Bst2BI CACGAG 1 cut(s) 2106
Bst4CI ACNGT 3 cut(s) 72, 1153, 2540
Bst6I CTCTTC 4 cut(s) 75, 1143, 2353, 3138
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 4 cut(s) 404, 1244, 2134, 2288
BstC8I GCNNGC 4 cut(s) 287, 1194, 1395, 1505
BstDSI CCRYGG 3 cut(s) 696, 2340, 2455
BstEII GGTNACC 1 cut(s) 338
BstENI CCTNNNNNAGG 2 cut(s) 126, 667
BstFNI CGCG 2 cut(s) 2457, 2575
BstH2I RGCGCY 2 cut(s) 249, 625
BstHHI GCGC 3 cut(s) 248, 624, 1837
BstMAI GTCTC 9 cut(s) 30, 50, 892, 899, 1110, 1848, 2270, 2582, 3121
BstMCI CGRYCG 1 cut(s) 1568
BstMWI GCNNNNNNNGC 9 cut(s) 404, 1244, 1523, 1659, 2095, 2134, 2288, 3010, 3053
BstNSI RCATGY 5 cut(s) 194, 289, 1115, 1861, 2452
BstPI GGTNACC 1 cut(s) 338
BstSFI CTRYAG 5 cut(s) 47, 222, 636, 885, 1338
BstSLI GKGCMC 2 cut(s) 421, 2130
BstUI CGCG 2 cut(s) 2457, 2575
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 3 cut(s) 1357, 2035, 2683
BstXI CCANNNNNNTGG 3 cut(s) 281, 364, 1816
BstYI RGATCY 3 cut(s) 1357, 2035, 2683
Bsu36I CCTNAGG 1 cut(s) 2297
BsuI GTATCC 2 cut(s) 2016, 2880
BsuRI GGCC 8 cut(s) 474, 510, 1092, 1220, 1935, 2104, 2665, 3062
BtgI CCRYGG 3 cut(s) 696, 2340, 2455
BtrI CACGTC 1 cut(s) 643
BtsI GCAGTG 2 cut(s) 274, 585
BtsIMutI CAGTG 9 cut(s) 77, 274, 279, 364, 585, 893, 1170, 1730, 2098
BveI ACCTGC 2 cut(s) 667, 1252
Cac8I GCNNGC 4 cut(s) 287, 1194, 1395, 1505
CciI TCATGA 2 cut(s) 766, 3018
CfoI GCGC 3 cut(s) 248, 624, 1837
Cfr10I RCCGGY 1 cut(s) 1073
Cfr13I GGNCC 4 cut(s) 1039, 1934, 2178, 2363
Cfr42I CCGCGG 1 cut(s) 2458
CseI GACGC 2 cut(s) 2564, 2581
Csp6I GTAC 4 cut(s) 913, 1030, 1606, 2506
CspAI ACCGGT 1 cut(s) 1073
CviQI GTAC 4 cut(s) 913, 1030, 1606, 2506
DinI GGCGCC 1 cut(s) 247
DraI TTTAAA 1 cut(s) 1233
DrdI GACNNNNNNGTC 1 cut(s) 3135
DriI GACNNNNNGTC 1 cut(s) 2911
DseDI GACNNNNNNGTC 1 cut(s) 3135
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 4 cut(s) 75, 1143, 2353, 3138
Eam1105I GACNNNNNGTC 1 cut(s) 2911
EarI CTCTTC 4 cut(s) 75, 1143, 2353, 3138
Ecl136II GAGCTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 696
Eco147I AGGCCT 1 cut(s) 3062
Eco24I GRGCYC 3 cut(s) 1071, 2464, 3058
Eco31I GGTCTC 3 cut(s) 30, 892, 899
Eco32I GATATC 1 cut(s) 1957
Eco47I GGWCC 3 cut(s) 1039, 2178, 2363
Eco53kI GAGCTC 1 cut(s) 1069
Eco57I CTGAAG 2 cut(s) 30, 414
Eco81I CCTNAGG 1 cut(s) 2297
Eco91I GGTNACC 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 1069
EcoNI CCTNNNNNAGG 2 cut(s) 126, 667
EcoO109I RGGNCCY 2 cut(s) 1039, 2363
EcoO65I GGTNACC 1 cut(s) 338
EcoRI GAATTC 3 cut(s) 1322, 1457, 1778
EcoRV GATATC 1 cut(s) 1957
EcoT14I CCWWGG 1 cut(s) 696
EcoT22I ATGCAT 2 cut(s) 196, 931
EcoT38I GRGCYC 3 cut(s) 1071, 2464, 3058
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 696
Esp3I CGTCTC 1 cut(s) 2582
FalI AAGNNNNNCTT 4 cut(s) 864, 896, 1428, 1460
FaqI GGGAC 3 cut(s) 1025, 1453, 1768
FauI CCCGC 2 cut(s) 351, 1545
FauNDI CATATG 1 cut(s) 1615
FblI GTMKAC 1 cut(s) 2162
FriOI GRGCYC 3 cut(s) 1071, 2464, 3058
FspBI CTAG 4 cut(s) 212, 1035, 1185, 1394
FspI TGCGCA 1 cut(s) 1836
GlaI GCGC 3 cut(s) 247, 623, 1836
GsuI CTGGAG 8 cut(s) 408, 637, 2262, 2638, 2664, 2678, 2778, 2913
HaeII RGCGCY 2 cut(s) 249, 625
HaeIII GGCC 8 cut(s) 474, 510, 1092, 1220, 1935, 2104, 2665, 3062
HapII CCGG 1 cut(s) 1074
HgaI GACGC 2 cut(s) 2564, 2581
HhaI GCGC 3 cut(s) 248, 624, 1837
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 3 cut(s) 246, 622, 1835
HinP1I GCGC 3 cut(s) 246, 622, 1835
HincII GTYRAC 3 cut(s) 558, 1149, 1413
HindII GTYRAC 3 cut(s) 558, 1149, 1413
HindIII AAGCTT 2 cut(s) 477, 3002
HpaII CCGG 1 cut(s) 1074
HphI GGTGA 6 cut(s) 691, 1063, 1583, 2296, 2818, 2950
HpyCH4III ACNGT 3 cut(s) 72, 1153, 2540
HpyCH4IV ACGT 2 cut(s) 642, 2613
HpyF10VI GCNNNNNNNGC 9 cut(s) 404, 1244, 1523, 1659, 2095, 2134, 2288, 3010, 3053
HpySE526I ACGT 2 cut(s) 642, 2613
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 3 cut(s) 246, 622, 1835
KasI GGCGCC 1 cut(s) 245
KflI GGGWCCC 1 cut(s) 1039
KspI CCGCGG 1 cut(s) 2458
LmnI GCTCC 7 cut(s) 956, 1500, 2459, 2683, 2797, 2932, 3214
MaeI CTAG 4 cut(s) 212, 1035, 1185, 1394
MaeII ACGT 2 cut(s) 642, 2613
MaeIII GTNAC 7 cut(s) 338, 611, 722, 1180, 1560, 2797, 2806
MfeI CAATTG 4 cut(s) 1527, 2193, 2829, 2967
MflI RGATCY 3 cut(s) 1357, 2035, 2683
MhlI GDGCHC 6 cut(s) 421, 1071, 2130, 2464, 2794, 3058
MlsI TGGCCA 1 cut(s) 474
MluI ACGCGT 1 cut(s) 2573
MluNI TGGCCA 1 cut(s) 474
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 4 cut(s) 1750, 1799, 2339, 2921
MmeI TCCRAC 2 cut(s) 840, 1432
Mox20I TGGCCA 1 cut(s) 474
Mph1103I ATGCAT 2 cut(s) 196, 931
MroXI GAANNNNTTC 3 cut(s) 789, 875, 1427
MscI TGGCCA 1 cut(s) 474
MslI CAYNNNNRTG 4 cut(s) 284, 818, 1814, 3023
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 4 cut(s) 8, 305, 2457, 2804
MspI CCGG 1 cut(s) 1074
MunI CAATTG 4 cut(s) 1527, 2193, 2829, 2967
Mva1269I GAATGC 1 cut(s) 194
MvnI CGCG 2 cut(s) 2457, 2575
MwoI GCNNNNNNNGC 9 cut(s) 404, 1244, 1523, 1659, 2095, 2134, 2288, 3010, 3053
NarI GGCGCC 1 cut(s) 246
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 1615
NheI GCTAGC 1 cut(s) 1393
NlaIV GGNNCC 7 cut(s) 247, 958, 1040, 1041, 1623, 1867, 2461
NmuCI GTSAC 4 cut(s) 611, 1180, 1560, 2806
NsbI TGCGCA 1 cut(s) 1836
NsiI ATGCAT 2 cut(s) 196, 931
NspI RCATGY 5 cut(s) 194, 289, 1115, 1861, 2452
PacI TTAATTAA 1 cut(s) 3123
PaeI GCATGC 1 cut(s) 289
PagI TCATGA 2 cut(s) 766, 3018
PaqCI CACCTGC 1 cut(s) 667
PasI CCCWGGG 1 cut(s) 1767
PceI AGGCCT 1 cut(s) 3062
PciI ACATGT 2 cut(s) 1857, 2448
PctI GAATGC 1 cut(s) 194
PdmI GAANNNNTTC 3 cut(s) 789, 875, 1427
PflFI GACNNNGTC 1 cut(s) 2387
PflMI CCANNNNNTGG 2 cut(s) 385, 746
PfoI TCCNGGA 1 cut(s) 1476
PinAI ACCGGT 1 cut(s) 1073
Ple19I CGATCG 1 cut(s) 1568
PleI GAGTC 4 cut(s) 1750, 1798, 2339, 2920
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 4 cut(s) 1750, 1798, 2339, 2920
PpuMI RGGWCCY 2 cut(s) 1039, 2363
PscI ACATGT 2 cut(s) 1857, 2448
PsiI TTATAA 1 cut(s) 2070
Psp124BI GAGCTC 1 cut(s) 1071
Psp5II RGGWCCY 2 cut(s) 1039, 2363
PspEI GGTNACC 1 cut(s) 338
PspN4I GGNNCC 7 cut(s) 247, 958, 1040, 1041, 1623, 1867, 2461
PspPI GGNCC 4 cut(s) 1039, 1934, 2178, 2363
PspPPI RGGWCCY 2 cut(s) 1039, 2363
PstI CTGCAG 3 cut(s) 226, 889, 1342
PsuI RGATCY 3 cut(s) 1357, 2035, 2683
PsyI GACNNNGTC 1 cut(s) 2387
PvuI CGATCG 1 cut(s) 1568
PvuII CAGCTG 2 cut(s) 8, 305
RsaI GTAC 4 cut(s) 914, 1031, 1607, 2507
RsaNI GTAC 4 cut(s) 913, 1030, 1606, 2506
RseI CAYNNNNRTG 4 cut(s) 284, 818, 1814, 3023
SacI GAGCTC 1 cut(s) 1071
SacII CCGCGG 1 cut(s) 2458
Sau96I GGNCC 4 cut(s) 1039, 1934, 2178, 2363
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 4 cut(s) 1750, 1799, 2339, 2921
SduI GDGCHC 6 cut(s) 421, 1071, 2130, 2464, 2794, 3058
SfcI CTRYAG 5 cut(s) 47, 222, 636, 885, 1338
SfoI GGCGCC 1 cut(s) 247
Sfr303I CCGCGG 1 cut(s) 2458
SgrBI CCGCGG 1 cut(s) 2458
SinI GGWCC 3 cut(s) 1039, 2178, 2363
SmiMI CAYNNNNRTG 4 cut(s) 284, 818, 1814, 3023
SmlI CTYRAG 2 cut(s) 590, 2465
SmoI CTYRAG 2 cut(s) 590, 2465
SpeI ACTAGT 1 cut(s) 1184
SphI GCATGC 1 cut(s) 289
SseBI AGGCCT 1 cut(s) 3062
SsiI CCGC 5 cut(s) 344, 1552, 2455, 2457, 2804
SspDI GGCGCC 1 cut(s) 245
SspI AATATT 1 cut(s) 2000
SspMI CTAG 4 cut(s) 212, 1035, 1185, 1394
SstI GAGCTC 1 cut(s) 1071
StuI AGGCCT 1 cut(s) 3062
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 3 cut(s) 72, 1153, 2540
TaiI ACGT 2 cut(s) 645, 2616
TaqI TCGA 5 cut(s) 67, 449, 1293, 2020, 3103
TaqII GACCGA 1 cut(s) 3125
TatI WGTACW 2 cut(s) 1029, 2505
TscAI CASTG 9 cut(s) 77, 281, 286, 364, 585, 900, 1177, 1730, 2105
TseFI GTSAC 4 cut(s) 611, 1180, 1560, 2806
Tsp45I GTSAC 4 cut(s) 611, 1180, 1560, 2806
TspGWI ACGGA 4 cut(s) 710, 930, 1610, 2357
TspRI CASTG 9 cut(s) 77, 281, 286, 364, 585, 900, 1177, 1730, 2105
Tth111I GACNNNGTC 1 cut(s) 2387
Van91I CCANNNNNTGG 2 cut(s) 385, 746
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 3 cut(s) 1039, 2178, 2363
XagI CCTNNNNNAGG 2 cut(s) 126, 667
XapI RAATTY 8 cut(s) 533, 1322, 1457, 1666, 1778, 2140, 2170, 2263
XceI RCATGY 5 cut(s) 194, 289, 1115, 1861, 2452
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmiI GTMKAC 1 cut(s) 2162
XmnI GAANNNNTTC 3 cut(s) 789, 875, 1427
XspI CTAG 4 cut(s) 212, 1035, 1185, 1394
ZrmI AGTACT 1 cut(s) 1031
Zsp2I ATGCAT 2 cut(s) 196, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.