Rmu_co8314139.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314139.1
OG0000598
Physical Location & Seq
Forward (+)
63 .. 928
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314139.1_g000001.1.cds

Sequence Viewer

Length: 866 bp
atggctgaagagtgcttgtccggcatgagcttatattccgatgagactcggcatggatttgagcacactatagggtggttgaatcagtgggcttgttcacgatcttttggacttgggactcgtatcccctgggatgaagaattcttagttgagtcactgtctgattcaactatttacatggcttattacaccattgctcatttcttacacaatggagatatgtatggtgccagcaggtcagaagttaaacctgagcaaatgactgatgacgtctgggattttattttctgtgatggcccatatcccaagtcttctgacatctcatcatcaattcttaagaaaatgaagaaagagtttgaatattggtatccttttgatctacgagtgtcaggcaaggatttgatccaaaaccatctagccttctgcatatacaaccacacggctattatgacgtccaacaagtactggcctcgtgggttcagatgtaatgggcacctcttgctaaatggtgagaagatgtccaagtctacagggaactttaggacccttcgccaggcaattgaggaattttctgctgatgccactcggttctctttggctgatgccggagatggtgtggatgatgcaaattttgtatttgtgactgccaatgctgcaatcttgcggctcactaaagagattgcatggattgaacaagttttggcttcagactcttgtttgagaacaggtcccccatctacttatgctgacagggtctttgctaatgagataaacattgctgtacacaggactgagctgaattacggagattacatgttccgagaagccctcaagactgggttttatgaccttcaagcagccaggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

288

Amino Acids

32.92

Weight (kDa)

5.21

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 273, 455
Acc36I ACCTGC 1 cut(s) 225
AccB1I GGYRCC 2 cut(s) 227, 492
AccI GTMKAC 1 cut(s) 527
AciI CCGC 1 cut(s) 664
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 3 cut(s) 140, 566, 628
AcuI CTGAAG 2 cut(s) 27, 690
AcyI GRCGYC 2 cut(s) 270, 452
AfaI GTAC 2 cut(s) 464, 783
AfiI CCNNNNNNNGG 1 cut(s) 553
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 5 cut(s) 82, 168, 359, 692, 854
AjnI CCWGG 3 cut(s) 128, 552, 860
AluBI AGCT 2 cut(s) 30, 796
AluI AGCT 2 cut(s) 30, 796
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 295, 467
ApeKI GCWGC 2 cut(s) 653, 857
ApoI RAATTY 3 cut(s) 140, 566, 628
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AspS9I GGNCC 3 cut(s) 296, 543, 728
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 2 cut(s) 543, 728
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 227, 492
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 640
BccI CCATC 4 cut(s) 287, 420, 605, 742
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 3 cut(s) 130, 554, 862
BciVI GTATCC 2 cut(s) 134, 378
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 2 cut(s) 69, 528
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 225
BfuI GTATCC 2 cut(s) 134, 378
BisI GCNGC 3 cut(s) 654, 665, 858
BlsI GCNGC 3 cut(s) 655, 666, 859
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 130, 554, 862
Bme18I GGWCC 2 cut(s) 543, 728
BmgT120I GGNCC 3 cut(s) 296, 543, 728
BmiI GGNNCC 4 cut(s) 229, 494, 545, 730
BmrFI CCNGG 3 cut(s) 130, 554, 862
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 3 cut(s) 568, 592, 613
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 813, 845
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 815
BsaHI GRCGYC 2 cut(s) 270, 452
BsaJI CCNNGG 3 cut(s) 128, 129, 861
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 470, 841
Bse3DI GCAATG 2 cut(s) 192, 774
BseBI CCWGG 3 cut(s) 130, 554, 862
BseDI CCNNGG 3 cut(s) 128, 129, 861
BseGI GGATG 2 cut(s) 139, 625
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 2 cut(s) 192, 774
BseMII CTCAG 2 cut(s) 243, 783
BseNI ACTGG 2 cut(s) 470, 841
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 1 cut(s) 640
BshFI GGCC 2 cut(s) 297, 469
BshNI GGYRCC 2 cut(s) 227, 492
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 21, 606
BslFI GGGAC 2 cut(s) 130, 714
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 130, 714
BsnI GGCC 2 cut(s) 297, 469
Bsp1286I GDGCHC 2 cut(s) 66, 495
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 3 cut(s) 101, 376, 402
BspACI CCGC 1 cut(s) 664
BspANI GGCC 2 cut(s) 297, 469
BspCNI CTCAG 2 cut(s) 244, 784
BspLI GGNNCC 4 cut(s) 229, 494, 545, 730
BspMI ACCTGC 1 cut(s) 225
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 2 cut(s) 227, 492
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 192, 774
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 2 cut(s) 470, 841
BssECI CCNNGG 3 cut(s) 128, 129, 861
BssMI GATC 3 cut(s) 101, 376, 402
BssNI GRCGYC 2 cut(s) 270, 452
BssSI CACGAG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 130, 554, 862
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 2 cut(s) 270, 452
BstAFI CTTAAG 1 cut(s) 335
BstAPI GCANNNNNTGC 1 cut(s) 499
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 145, 252, 792
BstENI CCTNNNNNAGG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 139, 625
BstKTI GATC 3 cut(s) 104, 379, 405
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 101, 376, 402
BstMWI GCNNNNNNNGC 3 cut(s) 21, 499, 653
BstNI CCWGG 3 cut(s) 130, 554, 862
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 3 cut(s) 128, 552, 860
BstSFI CTRYAG 2 cut(s) 69, 528
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 640
BstV2I GAAGAC 1 cut(s) 303
BsuI GTATCC 2 cut(s) 134, 378
BsuRI GGCC 2 cut(s) 297, 469
BtsCI GGATG 2 cut(s) 139, 625
BtsIMutI CAGTG 2 cut(s) 92, 155
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 296, 543, 728
Csp6I GTAC 2 cut(s) 463, 782
CviAII CATG 5 cut(s) 25, 53, 178, 684, 814
CviQI GTAC 2 cut(s) 463, 782
DdeI CTNAG 3 cut(s) 145, 252, 792
DpnI GATC 3 cut(s) 103, 378, 404
DpnII GATC 3 cut(s) 101, 376, 402
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco47I GGWCC 2 cut(s) 543, 728
Eco57I CTGAAG 2 cut(s) 27, 690
EcoNI CCTNNNNNAGG 1 cut(s) 551
EcoO109I RGGNCCY 2 cut(s) 543, 728
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 3 cut(s) 128, 552, 860
FaeI CATG 5 cut(s) 28, 56, 181, 687, 817
FaqI GGGAC 2 cut(s) 130, 714
FatI CATG 5 cut(s) 24, 52, 177, 683, 813
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 3 cut(s) 654, 665, 858
FokI GGATG 2 cut(s) 146, 632
Fsp4HI GCNGC 3 cut(s) 654, 665, 858
FspBI CTAG 1 cut(s) 416
GluI GCNGC 3 cut(s) 654, 665, 858
HaeIII GGCC 2 cut(s) 297, 469
HapII CCGG 2 cut(s) 21, 606
Hin1I GRCGYC 2 cut(s) 270, 452
Hin1II CATG 5 cut(s) 28, 56, 181, 687, 817
HinfI GANTC 6 cut(s) 46, 82, 118, 152, 164, 710
HpaII CCGG 2 cut(s) 21, 606
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 3 cut(s) 98, 528, 784
Hpy188I TCNGA 7 cut(s) 40, 163, 241, 316, 482, 709, 821
Hpy188III TCNNGA 2 cut(s) 99, 832
Hpy8I GTNNAC 3 cut(s) 98, 528, 784
HpyAV CCTTC 3 cut(s) 430, 557, 860
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 2 cut(s) 270, 452
HpyCH4V TGCA 4 cut(s) 426, 626, 656, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 499, 653
HpyF3I CTNAG 3 cut(s) 145, 252, 792
HpySE526I ACGT 2 cut(s) 270, 452
Hsp92I GRCGYC 2 cut(s) 270, 452
Hsp92II CATG 5 cut(s) 28, 56, 181, 687, 817
Kzo9I GATC 3 cut(s) 101, 376, 402
Lsp1109I GCAGC 1 cut(s) 640
LweI GCATC 3 cut(s) 568, 592, 613
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 270, 452
MaeIII GTNAC 2 cut(s) 153, 640
MalI GATC 3 cut(s) 103, 378, 404
MboI GATC 3 cut(s) 101, 376, 402
MboII GAAGA 5 cut(s) 20, 149, 303, 358, 526
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 2 cut(s) 66, 495
MluCI AATT 6 cut(s) 140, 330, 558, 566, 628, 799
MlyI GAGTC 4 cut(s) 40, 112, 161, 704
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 4 cut(s) 480, 506, 556, 839
MseI TTAA 2 cut(s) 246, 336
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 21, 606
MspR9I CCNGG 3 cut(s) 130, 554, 862
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 3 cut(s) 130, 554, 862
MwoI GCNNNNNNNGC 3 cut(s) 21, 499, 653
NdeII GATC 3 cut(s) 101, 376, 402
NlaIII CATG 5 cut(s) 28, 56, 181, 687, 817
NlaIV GGNNCC 4 cut(s) 229, 494, 545, 730
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 153, 640
NspI RCATGY 1 cut(s) 817
PasI CCCWGGG 1 cut(s) 129
PciI ACATGT 1 cut(s) 813
PfeI GAWTC 2 cut(s) 82, 164
PflFI GACNNNGTC 1 cut(s) 752
PkrI GCNGC 3 cut(s) 655, 666, 859
PleI GAGTC 4 cut(s) 40, 112, 160, 704
PpsI GAGTC 4 cut(s) 40, 112, 160, 704
PpuMI RGGWCCY 2 cut(s) 543, 728
PscI ACATGT 1 cut(s) 813
Psp5II RGGWCCY 2 cut(s) 543, 728
Psp6I CCWGG 3 cut(s) 128, 552, 860
PspGI CCWGG 3 cut(s) 128, 552, 860
PspN4I GGNNCC 4 cut(s) 229, 494, 545, 730
PspPI GGNCC 3 cut(s) 296, 543, 728
PspPPI RGGWCCY 2 cut(s) 543, 728
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 2 cut(s) 464, 783
RsaNI GTAC 2 cut(s) 463, 782
SaqAI TTAA 2 cut(s) 246, 336
SatI GCNGC 3 cut(s) 654, 665, 858
Sau3AI GATC 3 cut(s) 101, 376, 402
Sau96I GGNCC 3 cut(s) 296, 543, 728
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 4 cut(s) 40, 112, 161, 704
ScrFI CCNGG 3 cut(s) 130, 554, 862
SduI GDGCHC 2 cut(s) 66, 495
SetI ASST 9 cut(s) 32, 239, 253, 273, 455, 498, 730, 798, 852
SfaNI GCATC 3 cut(s) 568, 592, 613
SfcI CTRYAG 2 cut(s) 69, 528
SinI GGWCC 2 cut(s) 543, 728
SmlI CTYRAG 2 cut(s) 335, 830
SmoI CTYRAG 2 cut(s) 335, 830
Sse9I AATT 6 cut(s) 140, 330, 558, 566, 628, 799
SsiI CCGC 1 cut(s) 664
SspI AATATT 1 cut(s) 362
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 3 cut(s) 128, 552, 860
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 2 cut(s) 273, 455
TasI AATT 6 cut(s) 140, 330, 558, 566, 628, 799
TatI WGTACW 2 cut(s) 462, 781
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 2 cut(s) 82, 164
Tru1I TTAA 2 cut(s) 246, 336
Tru9I TTAA 2 cut(s) 246, 336
TscAI CASTG 2 cut(s) 92, 162
TseFI GTSAC 2 cut(s) 153, 640
TseI GCWGC 2 cut(s) 653, 857
Tsp45I GTSAC 2 cut(s) 153, 640
TspDTI ATGAA 2 cut(s) 150, 359
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 2 cut(s) 92, 162
Tth111I GACNNNGTC 1 cut(s) 752
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 543, 728
XagI CCTNNNNNAGG 1 cut(s) 551
XapI RAATTY 3 cut(s) 140, 566, 628
XceI RCATGY 1 cut(s) 817
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 1 cut(s) 416
ZraI GACGTC 2 cut(s) 271, 453
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.