pycom08g21220

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
20763735 .. 20765852
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21220.2

Sequence Viewer

Length: 1284 bp
ATGCCCAAGAAGCACTGGCCTCGTGGCTTTAGATGCAATGGGCACATCATGCTAAATGCTGAGAAGATGTCTAAGTCCACAGGGAACTTTAGGACTATTCGCCAGGCAATTGACGAATTTTCTGCTGATGCCACGCGATTCTCATTGGCTGATGCTGGAGATGGTGTTGATGATGCAAATTTCGTATTTGAGACTGCAAATGCTGCTATACTAAAGCTAACTAAAGAGATTGCATGGATGGAAGAAGTTTTAGCCGCAGAATCCTCTTTGAGAATAGGTCCTCCTTCTACTTATGCTGACAGGGTCTTTTTGAATGAGATAAATATTGCTGTGAACAGGACTGAGCAGAATTACCGGGATTACATGTTCCGAGATGCACTCAAGACTGGGTTTTACGATCTTCAGGCTTCTAGGGATGAGTACAGGCTTTCATGTGGTTCTGGGGGCATGAACCGTGAATTGCTGTGGCATTTTATGGACGCACAGACACGTCTTATTACTCCAATCTGTCCGCACTATGCAGAATATGTCTGGAGGGAACTTTTGAAGAAGGAAGGGTTTGTGGTCAATGCAGGATGGCCTGTGTCTGATTCTCCAGATCTGACCCTCCATAATGCCAACAAGTATTTGCAACATTCCATTGTTGTAATGAGGAAGCTTCTTGAAAAGCAAACTTCAGGCTTAACGAAAGCCAATAAGAAGGGTCCTCCAGTTAAAGCATCGACAGAAACCAAAAGGTTGATTGGTTTAATATATGTAAATGAGCAATTCGATGGATGGAAGGCGGAGTGTTTGAGGATACTACAGAGTAACTTTGACAGTGATACTCGCACTTTTGCTCCAGACAAGGTAATTTTGGAGGCTTTGCAGAGTTGTTCAATTGGTCAGAGTAAAGATTTTAGACAAACCCAAAAGCTTTGTATGCCTTTCTTGAGGTTCAAGAAGGATGAGGCAGTTACTCTTGGGCCCCATGCCTTAGACTTGAAGCTACCATTCGGAGAGATGGAGGTCCTTCAGGAGAACTTGGACTTAATTAAGAGACAAGTGAAGGTGGACACTAAGGGACAGGGACAAATCGAGCTTGAAGAAGTAGAAGTTCTGTCTGGTACCGACCCCGATGCTCTTGCTAAAGCTGGTTCACTTGCTAAATTAATAGAGCAGAATCCGCCATCCCCTGGAAGCCCAACTGCCATCTTCTTGACCCGGTTTTTTCAACTCAACAAAGGACCTTCAAGTTTCAACTGTCATAACTCCGCTCTCAAACACTGGCAACGAACAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

48.24

Weight (kDa)

8.06

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000598)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 1 cut(s) 1106
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccBSI CCGCTC 1 cut(s) 1256
AccII CGCG 1 cut(s) 136
AciI CCGC 5 cut(s) 255, 512, 785, 1166, 1254
AcsI RAATTY 2 cut(s) 116, 178
AcuI CTGAAG 3 cut(s) 386, 660, 998
AfaI GTAC 2 cut(s) 422, 1108
AfiI CCNNNNNNNGG 1 cut(s) 1175
AflIII ACRYGT 2 cut(s) 363, 488
AjiI CACGTC 1 cut(s) 491
AjnI CCWGG 2 cut(s) 102, 1174
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 6 cut(s) 217, 658, 916, 988, 1081, 1133
AluI AGCT 6 cut(s) 217, 658, 916, 988, 1081, 1133
Alw26I GTCTC 2 cut(s) 185, 1033
AoxI GGCC 3 cut(s) 17, 578, 965
ApaI GGGCCC 1 cut(s) 969
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 116, 178
AseI ATTAAT 1 cut(s) 1151
Asp718I GGTACC 1 cut(s) 1106
AspS9I GGNCC 6 cut(s) 278, 704, 965, 966, 1009, 1226
AsuC2I CCSGG 2 cut(s) 356, 1204
AvaII GGWCC 4 cut(s) 278, 704, 1009, 1226
BaeGI GKGCMC 2 cut(s) 45, 969
BanI GGYRCC 1 cut(s) 1106
BanII GRGCYC 1 cut(s) 969
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 1 cut(s) 190
BccI CCATC 8 cut(s) 155, 232, 570, 767, 771, 997, 1177, 1199
BcgI CGANNNNNNTGC 7 cut(s) 36, 104, 138, 1100, 1106, 1134, 1140
BciT130I CCWGG 2 cut(s) 104, 1176
BciVI GTATCC 1 cut(s) 792
BcnI CCSGG 2 cut(s) 356, 1204
BcoDI GTCTC 2 cut(s) 185, 1033
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 803
BfuI GTATCC 1 cut(s) 792
BglII AGATCT 1 cut(s) 598
BisI GCNGC 2 cut(s) 204, 255
BlsI GCNGC 2 cut(s) 205, 256
Bme1390I CCNGG 4 cut(s) 104, 356, 1176, 1204
Bme18I GGWCC 4 cut(s) 278, 704, 1009, 1226
BmgBI CACGTC 1 cut(s) 491
BmgT120I GGNCC 6 cut(s) 278, 704, 965, 966, 1009, 1226
BmiI GGNNCC 4 cut(s) 705, 967, 968, 1108
BmrFI CCNGG 4 cut(s) 104, 356, 1176, 1204
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 7 cut(s) 23, 118, 142, 163, 364, 728, 1108
BmuI ACTGGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpmI CTGGAG 5 cut(s) 177, 553, 579, 693, 825
BpuEI CTTGAG 2 cut(s) 365, 952
BpuMI CCSGG 2 cut(s) 356, 1204
BsaJI CCNNGG 1 cut(s) 1174
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 823, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 1175
Bse1I ACTGG 4 cut(s) 20, 391, 710, 1271
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 104, 1176
BseDI CCNNGG 1 cut(s) 1174
BseGI GGATG 6 cut(s) 243, 421, 581, 782, 952, 1169
BseLI CCNNNNNNNGG 1 cut(s) 1175
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 51, 333
BseNI ACTGG 4 cut(s) 20, 391, 710, 1271
BseSI GKGCMC 2 cut(s) 45, 969
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 3 cut(s) 19, 580, 967
BshNI GGYRCC 1 cut(s) 1106
BsiSI CCGG 2 cut(s) 355, 1204
BslFI GGGAC 2 cut(s) 1077, 1083
BslI CCNNNNNNNGG 1 cut(s) 1175
BsmAI GTCTC 2 cut(s) 185, 1033
BsmFI GGGAC 2 cut(s) 1077, 1083
BsnI GGCC 3 cut(s) 19, 580, 967
Bsp120I GGGCCC 1 cut(s) 965
Bsp1286I GDGCHC 2 cut(s) 45, 969
Bsp143I GATC 2 cut(s) 397, 598
BspACI CCGC 5 cut(s) 255, 512, 785, 1166, 1254
BspANI GGCC 3 cut(s) 19, 580, 967
BspCNI CTCAG 2 cut(s) 52, 334
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 4 cut(s) 705, 967, 968, 1108
BspT107I GGYRCC 1 cut(s) 1106
BsrBI CCGCTC 1 cut(s) 1256
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 4 cut(s) 20, 391, 710, 1271
BssECI CCNNGG 1 cut(s) 1174
BssMI GATC 2 cut(s) 397, 598
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 104, 1176
Bst4CI ACNGT 3 cut(s) 455, 821, 1244
BstAPI GCANNNNNTGC 2 cut(s) 49, 203
BstDEI CTNAG 5 cut(s) 60, 72, 342, 976, 1059
BstF5I GGATG 6 cut(s) 243, 421, 581, 782, 952, 1169
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 2 cut(s) 400, 601
BstMAI GTCTC 2 cut(s) 185, 1033
BstMBI GATC 2 cut(s) 397, 598
BstMWI GCNNNNNNNGC 6 cut(s) 10, 33, 49, 203, 922, 1165
BstNI CCWGG 2 cut(s) 104, 1176
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 4 cut(s) 102, 354, 1174, 1202
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 2 cut(s) 45, 969
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 3 cut(s) 19, 580, 967
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 6 cut(s) 243, 421, 581, 782, 952, 1169
BtsIMutI CAGTG 3 cut(s) 13, 826, 1264
Cfr13I GGNCC 6 cut(s) 278, 704, 965, 966, 1009, 1226
CseI GACGC 1 cut(s) 488
Csp6I GTAC 2 cut(s) 421, 1107
CviAII CATG 6 cut(s) 49, 234, 364, 432, 448, 971
CviQI GTAC 2 cut(s) 421, 1107
DdeI CTNAG 5 cut(s) 60, 72, 342, 976, 1059
DpnI GATC 2 cut(s) 399, 600
DpnII GATC 2 cut(s) 397, 598
EciI GGCGGA 2 cut(s) 800, 1155
Eco24I GRGCYC 1 cut(s) 969
Eco47I GGWCC 4 cut(s) 278, 704, 1009, 1226
Eco57I CTGAAG 3 cut(s) 386, 660, 998
EcoO109I RGGNCCY 5 cut(s) 278, 704, 966, 1009, 1226
EcoRII CCWGG 2 cut(s) 102, 1174
EcoT38I GRGCYC 1 cut(s) 969
FaeI CATG 6 cut(s) 52, 237, 367, 435, 451, 974
FaqI GGGAC 2 cut(s) 1077, 1083
FatI CATG 6 cut(s) 48, 233, 363, 431, 447, 970
Fnu4HI GCNGC 2 cut(s) 204, 255
FokI GGATG 6 cut(s) 250, 428, 588, 789, 959, 1156
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 2 cut(s) 204, 255
FspBI CTAG 1 cut(s) 411
GluI GCNGC 2 cut(s) 204, 255
GsuI CTGGAG 5 cut(s) 177, 553, 579, 693, 825
HaeIII GGCC 3 cut(s) 19, 580, 967
HapII CCGG 2 cut(s) 355, 1204
HgaI GACGC 1 cut(s) 488
Hin1II CATG 6 cut(s) 52, 237, 367, 435, 451, 974
HindIII AAGCTT 2 cut(s) 656, 914
HinfI GANTC 4 cut(s) 138, 260, 590, 1162
HpaII CCGG 2 cut(s) 355, 1204
Hpy166II GTNNAC 4 cut(s) 78, 334, 1054, 1139
Hpy188I TCNGA 5 cut(s) 371, 589, 603, 888, 998
Hpy188III TCNNGA 9 cut(s) 382, 532, 596, 662, 842, 931, 940, 1016, 1198
Hpy8I GTNNAC 4 cut(s) 78, 334, 1054, 1139
HpyAV CCTTC 9 cut(s) 294, 544, 548, 694, 775, 937, 1022, 1042, 1239
HpyCH4III ACNGT 3 cut(s) 455, 821, 1244
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 9 cut(s) 36, 176, 197, 233, 377, 521, 572, 631, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 33, 49, 203, 922, 1165
HpyF3I CTNAG 5 cut(s) 60, 72, 342, 976, 1059
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 6 cut(s) 52, 237, 367, 435, 451, 974
KpnI GGTACC 1 cut(s) 1110
Kzo9I GATC 2 cut(s) 397, 598
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 7 cut(s) 23, 118, 142, 163, 364, 728, 1108
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 809, 955
MalI GATC 2 cut(s) 399, 600
MbiI CCGCTC 1 cut(s) 1256
MboI GATC 2 cut(s) 397, 598
MboII GAAGA 6 cut(s) 76, 254, 392, 559, 1097, 1186
MfeI CAATTG 2 cut(s) 108, 879
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 45, 969
MseI TTAA 6 cut(s) 683, 714, 749, 1031, 1035, 1151
MspI CCGG 2 cut(s) 355, 1204
MspR9I CCNGG 4 cut(s) 104, 356, 1176, 1204
MunI CAATTG 2 cut(s) 108, 879
MvaI CCWGG 2 cut(s) 104, 1176
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 6 cut(s) 10, 33, 49, 203, 922, 1165
NciI CCSGG 2 cut(s) 356, 1204
NdeII GATC 2 cut(s) 397, 598
NlaIII CATG 6 cut(s) 52, 237, 367, 435, 451, 974
NlaIV GGNNCC 4 cut(s) 705, 967, 968, 1108
NspI RCATGY 1 cut(s) 367
PacI TTAATTAA 1 cut(s) 1035
PciI ACATGT 1 cut(s) 363
PfeI GAWTC 4 cut(s) 138, 260, 590, 1162
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 1175
PkrI GCNGC 2 cut(s) 205, 256
PpuMI RGGWCCY 4 cut(s) 278, 704, 1009, 1226
PscI ACATGT 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 1151
Psp5II RGGWCCY 4 cut(s) 278, 704, 1009, 1226
Psp6I CCWGG 2 cut(s) 102, 1174
PspGI CCWGG 2 cut(s) 102, 1174
PspN4I GGNNCC 4 cut(s) 705, 967, 968, 1108
PspOMI GGGCCC 1 cut(s) 965
PspPI GGNCC 6 cut(s) 278, 704, 965, 966, 1009, 1226
PspPPI RGGWCCY 4 cut(s) 278, 704, 1009, 1226
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 422, 1108
RsaNI GTAC 2 cut(s) 421, 1107
SaqAI TTAA 6 cut(s) 683, 714, 749, 1031, 1035, 1151
SatI GCNGC 2 cut(s) 204, 255
Sau3AI GATC 2 cut(s) 397, 598
Sau96I GGNCC 6 cut(s) 278, 704, 965, 966, 1009, 1226
ScrFI CCNGG 4 cut(s) 104, 356, 1176, 1204
SduI GDGCHC 2 cut(s) 45, 969
SfaNI GCATC 7 cut(s) 23, 118, 142, 163, 364, 728, 1108
SfcI CTRYAG 1 cut(s) 803
SinI GGWCC 4 cut(s) 278, 704, 1009, 1226
SmlI CTYRAG 2 cut(s) 380, 931
SmoI CTYRAG 2 cut(s) 380, 931
SsiI CCGC 5 cut(s) 255, 512, 785, 1166, 1254
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 4 cut(s) 102, 354, 1174, 1202
TaaI ACNGT 3 cut(s) 455, 821, 1244
TaiI ACGT 1 cut(s) 493
TaqI TCGA 3 cut(s) 722, 771, 1077
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 4 cut(s) 138, 260, 590, 1162
Tru1I TTAA 6 cut(s) 683, 714, 749, 1031, 1035, 1151
Tru9I TTAA 6 cut(s) 683, 714, 749, 1031, 1035, 1151
TscAI CASTG 3 cut(s) 20, 826, 1271
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 420, 464
TspRI CASTG 3 cut(s) 20, 826, 1271
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 4 cut(s) 278, 704, 1009, 1226
VspI ATTAAT 1 cut(s) 1151
XapI RAATTY 2 cut(s) 116, 178
XceI RCATGY 1 cut(s) 367
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.