Rroxscaffold_5G00383800

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000598
Physical Location & Seq
Reverse (-)
63372163 .. 63380682
8520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383800.1

Sequence Viewer

Length: 618 bp
ATGCTCACATGGGATGTATCCAAAGGTGATAACATTCTCCTAGAGATTAAGATTCTCCTAGAGATTGAAGCAGAGGTTCGAGAATGGTGGGAAGAGAAAGGCGTTTTTGTCAATGCTGATCAATCTCCTGACAACCCTCACTATCCTAATGATGAACTGGGGGATGATCGGAAGAAGTGGTTTGAAAACTACCTGTTTGGTGGTTTATCGCGACGGGCATTCCTGATATCTAAGCTGGAGTGTTGTGCAGCTTATCATAGATTAAGAGATGACAATGTGCCATGGCAAATCAAAGCCTCAGGCGCAGAGGAACTTCCGGAGAAGGTTATAAATCTGTTGGTTGGAGAACCACCAGTATTTCCAACAGTTTGGAGAGCTGCCTATTCTACTGATGCCATGAGACTCTCCTTAGCTTGTTCTTGTGATGGTGATGATTCTCCGAGAATTTTATTTAATACTGCAAATTCTGCTATCCGAAAGCTCACTAAAGAAATGTCATGGATTAGTGAACAACTAGCTTATATGGCTGCTGCTGCAGACTCTTCTTCTTTTGTGAGAAGAATCAGAAGAGATGGCCCCCCAGTACTTTTGCAGACAAGGTGTTTGCGAATGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

205

Amino Acids

23.48

Weight (kDa)

5.37

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccII CGCG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 316
AcsI RAATTY 2 cut(s) 444, 463
AfaI GTAC 1 cut(s) 585
AgsI TTSAA 2 cut(s) 68, 185
AluBI AGCT 6 cut(s) 235, 251, 377, 413, 481, 518
AluI AGCT 6 cut(s) 235, 251, 377, 413, 481, 518
Alw26I GTCTC 1 cut(s) 394
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 5 cut(s) 248, 377, 527, 530, 533
ApoI RAATTY 2 cut(s) 444, 463
ArsI GACNNNNNNTTYG 2 cut(s) 586, 618
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 38, 440
AxyI CCTNAGG 1 cut(s) 298
BbvI GCAGC 5 cut(s) 260, 364, 514, 517, 520
BccI CCATC 2 cut(s) 419, 566
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 41, 59, 515
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 5 cut(s) 249, 378, 528, 531, 534
BlsI GCNGC 5 cut(s) 250, 379, 529, 532, 535
BmcAI AGTACT 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 577
BmrI ACTGGG 2 cut(s) 167, 575
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 2 cut(s) 167, 575
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 162, 353, 581
Bse21I CCTNAGG 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 19, 169
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 162, 353, 581
BseXI GCAGC 5 cut(s) 260, 364, 514, 517, 520
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 576
BsiSI CCGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 576
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 118, 166
Bsp19I CCATGG 1 cut(s) 281
Bsp68I TCGCGA 1 cut(s) 211
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 1 cut(s) 538
BsrI ACTGG 3 cut(s) 162, 353, 581
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 118, 166
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 3 cut(s) 87, 547, 562
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 231, 298, 409
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 19, 169
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 121, 169
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 2 cut(s) 118, 166
BstMWI GCNNNNNNNGC 4 cut(s) 302, 467, 524, 533
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 5 cut(s) 260, 364, 514, 517, 520
BstXI CCANNNNNNTGG 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 298
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 2 cut(s) 19, 169
BtuMI TCGCGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 584
CviAII CATG 4 cut(s) 9, 282, 397, 498
CviJI RGCY 9 cut(s) 235, 251, 296, 377, 413, 481, 518, 527, 576
CviKI_1 RGCY 9 cut(s) 235, 251, 296, 377, 413, 481, 518, 527, 576
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 3 cut(s) 231, 298, 409
DpnI GATC 2 cut(s) 120, 168
DpnII GATC 2 cut(s) 118, 166
Eam1104I CTCTTC 3 cut(s) 87, 547, 562
EarI CTCTTC 3 cut(s) 87, 547, 562
Eco130I CCWWGG 1 cut(s) 281
Eco32I GATATC 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 298
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 4 cut(s) 12, 285, 400, 501
FaiI YATR 8 cut(s) 10, 258, 283, 329, 398, 499, 522, 524
FatI CATG 4 cut(s) 8, 281, 396, 497
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 5 cut(s) 249, 378, 528, 531, 534
FokI GGATG 2 cut(s) 26, 176
Fsp4HI GCNGC 5 cut(s) 249, 378, 528, 531, 534
FspBI CTAG 3 cut(s) 41, 59, 515
GlaI GCGC 1 cut(s) 304
GluI GCNGC 5 cut(s) 249, 378, 528, 531, 534
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 576
HapII CCGG 1 cut(s) 317
HhaI GCGC 1 cut(s) 305
Hin1II CATG 4 cut(s) 12, 285, 400, 501
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 5 cut(s) 52, 402, 434, 539, 561
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 38, 440
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 171, 441, 476, 566
Hpy188III TCNNGA 5 cut(s) 80, 128, 210, 223, 317
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 248, 461, 536, 592
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 467, 524, 533
HpyF3I CTNAG 3 cut(s) 231, 298, 409
Hsp92II CATG 4 cut(s) 12, 285, 400, 501
HspAI GCGC 1 cut(s) 303
Kpn2I TCCGGA 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 166
LpnPI CCDG 9 cut(s) 141, 143, 206, 221, 236, 285, 330, 366, 594
Lsp1109I GCAGC 5 cut(s) 260, 364, 514, 517, 520
LweI GCATC 1 cut(s) 382
MaeI CTAG 3 cut(s) 41, 59, 515
MalI GATC 2 cut(s) 120, 168
MboI GATC 2 cut(s) 118, 166
MboII GAAGA 6 cut(s) 104, 184, 534, 537, 570, 579
MluCI AATT 2 cut(s) 444, 463
MlyI GAGTC 2 cut(s) 396, 533
MmeI TCCRAC 2 cut(s) 322, 386
MnlI CCTC 4 cut(s) 67, 147, 301, 307
MroI TCCGGA 1 cut(s) 316
MseI TTAA 3 cut(s) 48, 263, 453
MspI CCGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 218
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 302, 467, 524, 533
NcoI CCATGG 1 cut(s) 281
NdeII GATC 2 cut(s) 118, 166
NlaIII CATG 4 cut(s) 12, 285, 400, 501
NlaIV GGNNCC 1 cut(s) 577
NruI TCGCGA 1 cut(s) 211
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 3 cut(s) 52, 434, 561
PkrI GCNGC 5 cut(s) 250, 379, 529, 532, 535
PleI GAGTC 2 cut(s) 396, 533
PpsI GAGTC 2 cut(s) 396, 533
PsiI TTATAA 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 1 cut(s) 538
RruI TCGCGA 1 cut(s) 211
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 48, 263, 453
SatI GCNGC 5 cut(s) 249, 378, 528, 531, 534
Sau3AI GATC 2 cut(s) 118, 166
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 2 cut(s) 396, 533
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 534
Sse9I AATT 2 cut(s) 444, 463
SspMI CTAG 3 cut(s) 41, 59, 515
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 79
TasI AATT 2 cut(s) 444, 463
TatI WGTACW 1 cut(s) 583
TfiI GAWTC 3 cut(s) 52, 434, 561
Tru1I TTAA 3 cut(s) 48, 263, 453
Tru9I TTAA 3 cut(s) 48, 263, 453
TseI GCWGC 5 cut(s) 248, 377, 527, 530, 533
TspDTI ATGAA 1 cut(s) 168
XapI RAATTY 2 cut(s) 444, 463
XspI CTAG 3 cut(s) 41, 59, 515
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.