Rh4AG399400

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000598
Physical Location & Seq
Reverse (-)
70326570 .. 70330187
3618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG399400.1

Sequence Viewer

Length: 1800 bp
ATGAGACTCTCCTTAGCTTGTTCTTGTGATGGTGATGATTCTCCGAGAATTTTATTTAATACTGCAAATTCTGCTATCCGAAAGCTCACTAAAGAAATGTCATGGATTAGTGAACAACTAGCTTATATGGCTGCTGCTGCAGACTCTTCTTCTTTTGTGAGAAGAATCAGAAGAGATGGCCCCCCCAGTACTTTTGCGGACAAGGTGTTTGCGAATGAGATAAATATTGCTGTGCATAACAGTGATAACTATTACCGGGCTTGCATGTTTCAAGAAGCCCTCATTTCTGGCTTTCTTCAACTTCAGGCTGCCAGGGACTCGTATAGAATTTCATGTGGTCCTCATGGCATGAACCATGATTTGGTGCTGCGCTATATTGATGTGCATACACGTCTAATTGCTCCAATCTGTCCACACTATGCTGAATATGTCTGGCGGGAATATTTAAAAAAGGAGGGGTTTGTGGTAATTAAGTCAGGCTGGCCTGCCGCTGATGCCCCGGATTTGATACTCCAAAGTGCCAATAAGTATTTGCAAGATCTAATTGAACTTATGAGGGAGCTTGAAAAGAAGTTTCGAGCTTTAAATGATGGTAATTATGATGTAACAGAAGAAGAAACGAAGGCAGTAGGTTTGATATATGTTAAGGAGGAAATTGATGGATGGGAGGGTAAGTGCTTGAGGATACTTCAAGATAACTTTGACAGCGAGACAAACACCTTTTCTGCTCAGGACGAGGACATGCTAGATGCATTAATATCGTACATATATGGGGATTTTACCATTCGTCAGGATATAGATTATAGGCAAACTGAACAGCTCTGTATGTCTTTTCTGAAGTTGAAGAAGGATGAAGCACTGAATTTTGGGGCTGATGCCTTAGAGTTGAAGCTACCATTTGGAGAGATTGAGGTCGTTCAAGAAAACTTGGACTTGATTAAGAGAGAAATTGGCCTTCATGAGGTTAAGGTACAAGTTTTCTCTGGTACCACCGGTCTTGAAGATTTTACACTGGATAGTCCTCCATCCCCTGGAAGGCCAGCTGCTGCCTTGGTGAGCCGTGACTTCTATGAGAAAATGGAACGTTCTGCTCCCGGAGTATGGGAATTGAAACGTCGTCTTCAGTTATCAGATAAAGTTCTTACTCCCTCGTCTCGTCCTCCCTCTGAGCTATTGTACCAGAAGAAAATGGAACATCCGTTTAAGTTGTTATTCCAGGAGAAAACGGAACATTCTGACCTTGGAGAACAGGAACCGAATGATGAACAATCCCCAGATAATATTCTTGCTCCATTATATCATCCTCCCTATGAGCTATTGTTTCAGGGCTCTTTCAAAAAGGCCAAACGTACTGCTTCTGCCGAGGACAAATGGCTCCTCGTGAACTTGCAATCGACTAAGGAATTCAGCTCACATCTGATTAATCAAGACACCTGGGCTAATGAAGCTGTCTCGAAAATCATCAGCACTAATTTTATCTTCTGGCAGGCATATGATGATTCAAATGAAGTCAAGAAGATTTGCAGATTCTACAACTTGGTATATACACCTGTAGTGCTTATCATTGACCCCATAAATGGTGAGAATATGCGTTCGTGGTATGGAATGGTTCAACCAGAACGTCTGCTGGAGGATCTGTTAGTACCATTTTTGGAAAATAGCCCCAAGGATCACCATCATCCAGGAGAAGAAAGTTCTCAGCCTCAGCCAGAGGAAAGTGAAGATGATTCGGTTGGTGACAAAACTGATGAAGAAGATGAGGAATTGCAGTGGGCATTGGAAGCTTCCATGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

599

Amino Acids

68.65

Weight (kDa)

4.79

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 67 - 192 5.8e-11 Anticodon-binding domain of tRNA ligase
Thioredoxin_7 PF13899 444 - 524 9.6e-13 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 2 cut(s) 361, 1031
AciI CCGC 3 cut(s) 197, 436, 489
AclI AACGTT 1 cut(s) 1084
AclWI GGATC 2 cut(s) 1641, 1677
AcsI RAATTY 5 cut(s) 48, 67, 327, 862, 1403
AcuI CTGAAG 3 cut(s) 287, 857, 1106
AfaI GTAC 7 cut(s) 190, 764, 972, 988, 1178, 1351, 1644
AfiI CCNNNNNNNGG 6 cut(s) 361, 961, 1031, 1035, 1101, 1577
AflIII ACRYGT 1 cut(s) 389
AgeI ACCGGT 1 cut(s) 992
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 5 cut(s) 311, 1030, 1215, 1433, 1681
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
Alw26I GTCTC 3 cut(s) 704, 1158, 1456
AlwI GGATC 2 cut(s) 1641, 1677
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 5 cut(s) 178, 482, 952, 1037, 1341
ApeKI GCWGC 7 cut(s) 131, 134, 137, 308, 367, 1043, 1046
ApoI RAATTY 5 cut(s) 48, 67, 327, 862, 1403
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AseI ATTAAT 2 cut(s) 755, 1422
AsiGI ACCGGT 1 cut(s) 992
Asp718I GGTACC 1 cut(s) 986
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 179, 338
AsuC2I CCSGG 3 cut(s) 257, 500, 1095
AsuHPI GGTGA 5 cut(s) 44, 1066, 1592, 1664, 1748
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 1331
BauI CACGAG 1 cut(s) 1379
BbsI GAAGAC 1 cut(s) 1112
BbvCI CCTCAGC 1 cut(s) 1704
BbvI GCAGC 7 cut(s) 118, 121, 124, 295, 354, 1030, 1033
BccI CCATC 7 cut(s) 23, 170, 584, 653, 657, 1033, 1683
BceAI ACGGC 1 cut(s) 1044
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciT130I CCWGG 5 cut(s) 313, 1032, 1217, 1435, 1683
BciVI GTATCC 1 cut(s) 678
BcnI CCSGG 3 cut(s) 257, 500, 1095
BcoDI GTCTC 3 cut(s) 704, 1158, 1456
BfaI CTAG 2 cut(s) 119, 746
BfmI CTRYAG 2 cut(s) 138, 1551
BfuI GTATCC 1 cut(s) 678
BglII AGATCT 1 cut(s) 538
BisI GCNGC 8 cut(s) 132, 135, 138, 309, 368, 489, 1044, 1047
BlsI GCNGC 8 cut(s) 133, 136, 139, 310, 369, 490, 1045, 1048
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 8 cut(s) 257, 313, 500, 1032, 1095, 1217, 1435, 1683
Bme18I GGWCC 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 179, 338
BmiI GGNNCC 4 cut(s) 181, 988, 1254, 1376
BmrFI CCNGG 8 cut(s) 257, 313, 500, 1032, 1095, 1217, 1435, 1683
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 3 cut(s) 484, 739, 865
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 1112
BpmI CTGGAG 1 cut(s) 1649
Bpu10I CCTNAGC 3 cut(s) 13, 729, 1704
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 3 cut(s) 257, 500, 1095
BsaBI GATNNNNATC 1 cut(s) 1674
BsaJI CCNNGG 8 cut(s) 312, 498, 1030, 1050, 1240, 1362, 1434, 1665
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 4 cut(s) 659, 689, 1622, 1652
Bsc4I CCNNNNNNNGG 6 cut(s) 361, 961, 1031, 1035, 1101, 1577
Bse118I RCCGGY 1 cut(s) 992
Bse1I ACTGG 2 cut(s) 186, 1017
Bse8I GATNNNNATC 1 cut(s) 1674
BseBI CCWGG 5 cut(s) 313, 1032, 1217, 1435, 1683
BseDI CCNNGG 8 cut(s) 312, 498, 1030, 1050, 1240, 1362, 1434, 1665
BseGI GGATG 6 cut(s) 668, 856, 1025, 1195, 1300, 1678
BseJI GATNNNNATC 1 cut(s) 1674
BseLI CCNNNNNNNGG 6 cut(s) 361, 961, 1031, 1035, 1101, 1577
BseMII CTCAG 4 cut(s) 743, 1158, 1712, 1718
BseNI ACTGG 2 cut(s) 186, 1017
BseRI GAGGAG 1 cut(s) 1367
BseXI GCAGC 7 cut(s) 118, 121, 124, 295, 354, 1030, 1033
BshFI GGCC 5 cut(s) 180, 484, 954, 1039, 1343
BshNI GGYRCC 1 cut(s) 986
BshTI ACCGGT 1 cut(s) 992
BsiSI CCGG 4 cut(s) 256, 500, 993, 1095
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 6 cut(s) 361, 961, 1031, 1035, 1101, 1577
BsmAI GTCTC 3 cut(s) 704, 1158, 1456
BsmBI CGTCTC 1 cut(s) 1158
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 5 cut(s) 180, 484, 954, 1039, 1343
Bsp1286I GDGCHC 1 cut(s) 1331
Bsp143I GATC 3 cut(s) 538, 1633, 1669
BspACI CCGC 3 cut(s) 197, 436, 489
BspANI GGCC 5 cut(s) 180, 484, 954, 1039, 1343
BspCNI CTCAG 4 cut(s) 742, 1159, 1711, 1717
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 4 cut(s) 181, 988, 1254, 1376
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 2 cut(s) 1641, 1677
BspT107I GGYRCC 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 992
BsrI ACTGG 2 cut(s) 186, 1017
BssAI RCCGGY 1 cut(s) 992
BssECI CCNNGG 8 cut(s) 312, 498, 1030, 1050, 1240, 1362, 1434, 1665
BssMI GATC 3 cut(s) 538, 1633, 1669
BssSI CACGAG 1 cut(s) 1379
BssT1I CCWWGG 3 cut(s) 1050, 1240, 1665
Bst2BI CACGAG 1 cut(s) 1379
Bst2UI CCWGG 5 cut(s) 313, 1032, 1217, 1435, 1683
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 151, 166
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 5 cut(s) 262, 482, 486, 1041, 1488
BstDEI CTNAG 7 cut(s) 13, 729, 880, 1167, 1398, 1698, 1704
BstENI CCTNNNNNAGG 1 cut(s) 959
BstF5I GGATG 6 cut(s) 668, 856, 1025, 1195, 1300, 1678
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 3 cut(s) 541, 1636, 1672
BstMAI GTCTC 3 cut(s) 704, 1158, 1456
BstMBI GATC 3 cut(s) 538, 1633, 1669
BstMWI GCNNNNNNNGC 6 cut(s) 71, 128, 137, 494, 1445, 1781
BstNI CCWGG 5 cut(s) 313, 1032, 1217, 1435, 1683
BstNSI RCATGY 2 cut(s) 268, 745
BstSCI CCNGG 8 cut(s) 255, 311, 498, 1030, 1093, 1215, 1433, 1681
BstSFI CTRYAG 2 cut(s) 138, 1551
BstV1I GCAGC 7 cut(s) 118, 121, 124, 295, 354, 1030, 1033
BstV2I GAAGAC 1 cut(s) 1112
BstX2I RGATCY 2 cut(s) 538, 1633
BstYI RGATCY 2 cut(s) 538, 1633
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 5 cut(s) 180, 484, 954, 1039, 1343
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 6 cut(s) 668, 856, 1025, 1195, 1300, 1678
BtsI GCAGTG 1 cut(s) 1775
BtsIMutI CAGTG 4 cut(s) 247, 857, 1010, 1775
Cac8I GCNNGC 5 cut(s) 262, 482, 486, 1041, 1488
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 958
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 992
Cfr13I GGNCC 2 cut(s) 179, 338
Csp6I GTAC 7 cut(s) 189, 763, 971, 987, 1177, 1350, 1643
CspAI ACCGGT 1 cut(s) 992
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviQI GTAC 7 cut(s) 189, 763, 971, 987, 1177, 1350, 1643
DdeI CTNAG 7 cut(s) 13, 729, 880, 1167, 1398, 1698, 1704
DpnI GATC 3 cut(s) 540, 1635, 1671
DpnII GATC 3 cut(s) 538, 1633, 1669
DraI TTTAAA 2 cut(s) 447, 585
Eam1104I CTCTTC 2 cut(s) 151, 166
EarI CTCTTC 2 cut(s) 151, 166
Eco130I CCWWGG 3 cut(s) 1050, 1240, 1665
Eco24I GRGCYC 1 cut(s) 1331
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 3 cut(s) 287, 857, 1106
EcoNI CCTNNNNNAGG 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 1403
EcoRII CCWGG 5 cut(s) 311, 1030, 1215, 1433, 1681
EcoT14I CCWWGG 3 cut(s) 1050, 1240, 1665
EcoT22I ATGCAT 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 1331
ErhI CCWWGG 3 cut(s) 1050, 1240, 1665
Esp3I CGTCTC 1 cut(s) 1158
FaqI GGGAC 1 cut(s) 329
FauI CCCGC 1 cut(s) 429
FauNDI CATATG 1 cut(s) 1492
Fnu4HI GCNGC 8 cut(s) 132, 135, 138, 309, 368, 489, 1044, 1047
FokI GGATG 6 cut(s) 675, 863, 1012, 1182, 1287, 1665
FriOI GRGCYC 1 cut(s) 1331
Fsp4HI GCNGC 8 cut(s) 132, 135, 138, 309, 368, 489, 1044, 1047
FspBI CTAG 2 cut(s) 119, 746
GlaI GCGC 1 cut(s) 371
GluI GCNGC 8 cut(s) 132, 135, 138, 309, 368, 489, 1044, 1047
GsuI CTGGAG 1 cut(s) 1649
HaeIII GGCC 5 cut(s) 180, 484, 954, 1039, 1343
HapII CCGG 4 cut(s) 256, 500, 993, 1095
HhaI GCGC 1 cut(s) 372
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 1782
HinfI GANTC 8 cut(s) 6, 38, 143, 165, 317, 1499, 1527, 1727
HpaII CCGG 4 cut(s) 256, 500, 993, 1095
HphI GGTGA 5 cut(s) 44, 1066, 1592, 1664, 1748
Hpy166II GTNNAC 3 cut(s) 113, 413, 1384
Hpy188I TCNGA 8 cut(s) 45, 80, 170, 837, 1132, 1168, 1237, 1419
Hpy8I GTNNAC 3 cut(s) 113, 413, 1384
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 4 cut(s) 616, 841, 965, 1029
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 5 cut(s) 391, 1084, 1114, 1348, 1621
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 128, 137, 494, 1445, 1781
HpyF3I CTNAG 7 cut(s) 13, 729, 880, 1167, 1398, 1698, 1704
HpySE526I ACGT 5 cut(s) 391, 1084, 1114, 1348, 1621
HspAI GCGC 1 cut(s) 370
KpnI GGTACC 1 cut(s) 990
Kzo9I GATC 3 cut(s) 538, 1633, 1669
LmnI GCTCC 5 cut(s) 406, 559, 1096, 1294, 1380
Lsp1109I GCAGC 7 cut(s) 118, 121, 124, 295, 354, 1030, 1033
LweI GCATC 3 cut(s) 484, 739, 865
MaeI CTAG 2 cut(s) 119, 746
MaeII ACGT 5 cut(s) 391, 1084, 1114, 1348, 1621
MaeIII GTNAC 3 cut(s) 604, 1061, 1736
MalI GATC 3 cut(s) 540, 1635, 1671
MboI GATC 3 cut(s) 538, 1633, 1669
MflI RGATCY 2 cut(s) 538, 1633
MhlI GDGCHC 1 cut(s) 1331
MlyI GAGTC 2 cut(s) 137, 311
Mph1103I ATGCAT 1 cut(s) 754
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 491, 1043
MspI CCGG 4 cut(s) 256, 500, 993, 1095
MspR9I CCNGG 8 cut(s) 257, 313, 500, 1032, 1095, 1217, 1435, 1683
MvaI CCWGG 5 cut(s) 313, 1032, 1217, 1435, 1683
MwoI GCNNNNNNNGC 6 cut(s) 71, 128, 137, 494, 1445, 1781
NciI CCSGG 3 cut(s) 257, 500, 1095
NdeI CATATG 1 cut(s) 1492
NdeII GATC 3 cut(s) 538, 1633, 1669
NlaIV GGNNCC 4 cut(s) 181, 988, 1254, 1376
NmeAIII GCCGAG 1 cut(s) 1387
NmuCI GTSAC 2 cut(s) 1061, 1736
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 2 cut(s) 268, 745
PagI TCATGA 1 cut(s) 958
PfeI GAWTC 5 cut(s) 38, 165, 1499, 1527, 1727
PflMI CCANNNNNTGG 2 cut(s) 361, 1031
PfoI TCCNGGA 3 cut(s) 1093, 1215, 1681
PinAI ACCGGT 1 cut(s) 992
PkrI GCNGC 8 cut(s) 133, 136, 139, 310, 369, 490, 1045, 1048
PleI GAGTC 2 cut(s) 137, 311
PpsI GAGTC 2 cut(s) 137, 311
PshBI ATTAAT 2 cut(s) 755, 1422
Psp1406I AACGTT 1 cut(s) 1084
Psp6I CCWGG 5 cut(s) 311, 1030, 1215, 1433, 1681
PspGI CCWGG 5 cut(s) 311, 1030, 1215, 1433, 1681
PspN4I GGNNCC 4 cut(s) 181, 988, 1254, 1376
PspPI GGNCC 2 cut(s) 179, 338
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 538, 1633
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 7 cut(s) 190, 764, 972, 988, 1178, 1351, 1644
RsaNI GTAC 7 cut(s) 189, 763, 971, 987, 1177, 1350, 1643
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 8 cut(s) 132, 135, 138, 309, 368, 489, 1044, 1047
Sau3AI GATC 3 cut(s) 538, 1633, 1669
Sau96I GGNCC 2 cut(s) 179, 338
ScaI AGTACT 1 cut(s) 190
SchI GAGTC 2 cut(s) 137, 311
ScrFI CCNGG 8 cut(s) 257, 313, 500, 1032, 1095, 1217, 1435, 1683
SduI GDGCHC 1 cut(s) 1331
SfaNI GCATC 3 cut(s) 484, 739, 865
SfcI CTRYAG 2 cut(s) 138, 1551
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SsiI CCGC 3 cut(s) 197, 436, 489
SspI AATATT 3 cut(s) 226, 443, 1282
SspMI CTAG 2 cut(s) 119, 746
StyD4I CCNGG 8 cut(s) 255, 311, 498, 1030, 1093, 1215, 1433, 1681
StyI CCWWGG 3 cut(s) 1050, 1240, 1665
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 5 cut(s) 394, 1087, 1117, 1351, 1624
TaqI TCGA 3 cut(s) 577, 1394, 1454
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 5 cut(s) 38, 165, 1499, 1527, 1727
TscAI CASTG 4 cut(s) 247, 864, 1017, 1775
TseFI GTSAC 2 cut(s) 1061, 1736
TseI GCWGC 7 cut(s) 131, 134, 137, 308, 367, 1043, 1046
Tsp45I GTSAC 2 cut(s) 1061, 1736
TspDTI ATGAA 8 cut(s) 321, 365, 867, 947, 1278, 1458, 1521, 1764
TspGWI ACGGA 2 cut(s) 1188, 1241
TspRI CASTG 4 cut(s) 247, 864, 1017, 1775
Van91I CCANNNNNTGG 2 cut(s) 361, 1031
VpaK11BI GGWCC 1 cut(s) 338
VspI ATTAAT 2 cut(s) 755, 1422
XagI CCTNNNNNAGG 1 cut(s) 959
XapI RAATTY 5 cut(s) 48, 67, 327, 862, 1403
XceI RCATGY 2 cut(s) 268, 745
XspI CTAG 2 cut(s) 119, 746
ZrmI AGTACT 1 cut(s) 190
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.