Rmu_sc0018919.1_g000004

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018919.1
OG0000598
Physical Location & Seq
Forward (+)
14643 .. 18069
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018919.1_g000004.1.cds

Sequence Viewer

Length: 3015 bp
atgcagcttctgttaagagtagtgcaagattgttcgtggatttatagttacaaacagggagaaaaggtaatggcagtcgatggtgggaagaaatctaggagagatcgtctcaaagagattgaggagaaggcacaaaagttgtgggaagaaaatggtgttttcagggctgaatcttgtgaaaagccacctgaaccaggggagaagttctttgggaacttccctcttccttacatgaatggttttttgcatgtagggcatgcattctcactctcgaagctagagttttctgctcgttttcataggttaagaggtgctaatgtgctgctcccggttggtttccacctcactggcatgcccatcaaaagtattggcctgtctgccattgatatatcagaactccagaatccatcgaactggttgagctgcttccctcgagtttcagtgaaagagctcaaggcatttggcttgggctgtgactggaggcgctcctttattaccacagacatgaacccatactttgacaagtttgtgagatggcagatgaggaaactaaaatctatgggtaagattgtgaaggatgtccgttacacaatctactctcctttggatggccagccatgtgcagatcatgatagggaaactggtgaaggagttcggccccaagagtacaccatcatcaaaatggaggtggtggcaccttttcctcctaaactgggagtgttgaagggaaagaaagtcttccttgctgccgcaacattgagacctgagacttcttatggtcaaacaaatgcatgggtgttgcctgatggcaagtatggagcctttgaaatcaatgaaacagatgtcttcattcttacgcagagagcagcacttaatcttgcctatcagaagtactctagggttccagaaaagccttcttgcttggttgagatgactggctatgatttgattggccttccattgaagtctccacttgcactcaatcagatcgtttatgcccttcctatgttgaccgtcctaacagacaaaggtactgggatattgactagtgtacctagtgatgctcctgatgattatatggccttggaagatttaaaattgaaaccagcttttagagaaaaatatggtgtgaaggatgaatgggtcatgccctttgatatcattccaataatcaaaattccggaatatggagacaaggctgctaaaaaggttgtggaagatctcaaaatcaaaagtcagaatgagatagagaagctagcagaagccaagaggttgacatccttgaaaggtttacctgaaggaaaactgcttgtgggagaattcaaagaaaggatagtccaggaggcaaaaccattgataaggagcaggctaatagaggcaggtgatgcaatcatgtatagcgagcctgaaaagctggtagtttcacgatctggtgatgaatgtgttgttgctcttatagatcaatggtgcatcatgtacatatggggaagcagaatggaaaaaaactgctcaggatgggcttgttctcgatcttttggtcttggtacacgcattccctgggatgaagaatacttggtcgagccgttatccgattcaactctttacatggcttattacaccgttgctcacctgttacacaatggagacatgtatggcagctccaacagcacatctgcagtaagagctgaacaaatgaccgatgaggtttgggattttattttctgtgatggatcgtatccacaatcatctgatatcacaccatcaattcttaacaagatgaagcaggagtttgaatattggtatccttttgatcttgaggtgtctggtaaggatctaatccagaatcataccttctgcatttacaaccatactgcacttctgcgcaagaagcactggcctagtgcgtttagatgcaatgggcacctgctgctcaaatccacgaagaatgccaatggtgctggaaattttatatcattgagacacgcaattgatcactattctgctgatgccacgcggtttgctttggctgatattagtgatggtattgacgatgcatacttttcatttgaaactgcaaatgccgccatcatacgtctcactaaggagatagattggattgatcggatgaaagataaagatttgggtaaagactcttctctgagaataggttccccttgtaccttctctgaccgggtctttctgaatgaaataaatattgctgtgaagaggactgagcaaaattaccagggttgcatgttcagggaagccctaaagactggcttttacgatcttcaagctgccagggattggtacaggatttcatgtggtgctactaatgcaatgaaccacgatttggtgtggcgttttatagatgtgcagacccgtcttattgctccaatttgtccccactatgcagaacatgtctggagggaacttttaggcctcgtttggttcgcggaaaatctaacactccagagtgcgaataagtatttgcaagactcaattgattcaataaggaagcagcatctatcaacttcaaagaaaaccaatatgggtgcttcagctacttctttgacagaagcgttgatatatgttaaggagaaatatgacggatggaaagcagaatgcttaaaaatacttcaacatgacttaaatagagatactcttacttctgctcaagaggacagggagatatttgaggcattgaaggctagtccttttggtcaagatgatgattttagccaaaagaactgtatggaatttttgaagttcaagaaggagaaggcagttgcacttggagttcaggcattggacttgaagctacctttcggagagattgaagtccttgaacagaacttggacttgattaaaaaacaaatacatggtcttgaagaggtacaagtattgtcagctatcaacgctgctgatattgctagagctggtcctcatgctagactgctagagaagaatcctccctttcctggaagcccaactacggttttcttgacccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0001101 GO:0003674 GO:0003824 GO:0004812 GO:0004819 GO:0004823 GO:0004832 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006425 GO:0006429 GO:0006438 GO:0006518 GO:0006520 GO:0006605 GO:0006622 GO:0006623 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007034 GO:0007041 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009267 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009719 GO:0009892 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010506 GO:0010507 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0023051 GO:0023056 GO:0030054 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032006 GO:0032008 GO:0032535 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034198 GO:0034613 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042594 GO:0042886 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043170 GO:0043200 GO:0043201 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0060589 GO:0061462 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071233 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090066 GO:0090304 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903432 GO:1904263 GO:1990253 GO:1990928
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Anticodon_1 tRNA-synt_1

Protein Analysis

1004

Amino Acids

113.96

Weight (kDa)

6.51

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09620
fragaria_vesca FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_1g25930 FvH4_3g34581 FvH4_4g33720 FvH4_4g33720
malus_domestica MD08G1244600.v1.1 MD15G1439400.v1.1
prunus_persica Prupe.1G582000_v2.0.a1 Prupe.2G015100_v2.0.a1 Prupe.2G123100_v2.0.a1
pyrus_communis pycom08g21210 pycom08g21220 pycom15g38730
rosa_chinensis RchiOBHm_Chr1g0336121 RchiOBHm_Chr1g0353811 RchiOBHm_Chr1g0373331 RchiOBHm_Chr4g0443191 RchiOBHm_Chr4g0443201 RchiOBHm_Chr4g0443211
rosa_laevigata RLG00000003122 RLG00000005948 RLG00000026826 RLG00000028251 RLG00000028252 RLG00000028253 RLG00000029377
rosa_multiflora Rmu_co8002498.1_g000001 Rmu_co8262279.1_g000001 Rmu_co8314139.1_g000001 Rmu_co8393711.1_g000001 Rmu_co8419167.1_g000001 Rmu_sc0007968.1_g000004 Rmu_sc0018919.1_g000004 Rmu_sc0027447.1_g000001
rosa_roxburghii Rroxscaffold_4G00284260 Rroxscaffold_4G00301490 Rroxscaffold_4G00315860 Rroxscaffold_5G00383790 Rroxscaffold_5G00383800
rosa_rugosa Rorug01G0123100 Rorug01G0238700 Rorug01G0377100 Rorug01G0377100 Rorug01G0377200 Rorug01G0377300 Rorug04G0344700 Rorug05G0347900.1
rosa_samantha Rh1AG143800 Rh1AG250300 Rh1AG386300 Rh1BG113400 Rh1BG220800 Rh1BG220900 Rh1BG350400 Rh1CG135500 Rh1CG233100 Rh1CG363500 Rh1DG150200 Rh1DG247700 Rh1DG247800 Rh1DG381300 Rh4AG399400 Rh4AG399500 Rh4BG411000 Rh4BG411100 Rh4BG411200 Rh4CG426500 Rh4CG426600 Rh4DG406100 Rh4DG406200 Rh4DG406300
rosa_wichuraiana Rw0G015190 Rw1G021850 Rw1G034870 Rw4G034440 Rw4G034450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1370, 1932
Acc16I TGCGCA 1 cut(s) 1883
Acc36I ACCTGC 2 cut(s) 1370, 1932
AccB1I GGYRCC 2 cut(s) 694, 1920
AccB7I CCANNNNNTGG 2 cut(s) 2307, 2353
AccII CGCG 2 cut(s) 2014, 2456
AccIII TCCGGA 1 cut(s) 1180
AciI CCGC 4 cut(s) 750, 2014, 2082, 2456
AclWI GGATC 2 cut(s) 1738, 1839
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 4 cut(s) 1176, 1319, 1963, 2759
AcuI CTGAAG 2 cut(s) 1317, 2544
AfaI GTAC 9 cut(s) 668, 893, 1033, 1053, 1478, 1546, 2179, 2312, 2898
AfiI CCNNNNNNNGG 8 cut(s) 194, 608, 713, 1187, 2307, 2353, 2981, 2995
AflIII ACRYGT 2 cut(s) 1647, 2419
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 6 cut(s) 193, 1338, 1556, 2244, 2300, 2980
AjuI GAANNNNNNNTTGG 2 cut(s) 2336, 2368
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 8 cut(s) 113, 754, 761, 972, 1185, 1638, 1972, 2099
AlwI GGATC 2 cut(s) 1738, 1839
AlwNI CAGNNNCTG 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 432
Aor13HI TCCGGA 1 cut(s) 1180
AoxI GGCC 7 cut(s) 370, 610, 656, 952, 1080, 1895, 2440
ApoI RAATTY 4 cut(s) 1176, 1319, 1963, 2759
ArsI GACNNNNNNTTYG 2 cut(s) 2869, 2901
Asp700I GAANNNNTTC 3 cut(s) 651, 737, 2167
AspLEI GCGC 2 cut(s) 486, 1884
AspS9I GGNCC 2 cut(s) 657, 2942
AsuC2I CCSGG 3 cut(s) 329, 2192, 3010
AsuHPI GGTGA 4 cut(s) 656, 1394, 1445, 1619
AsuNHI GCTAGC 1 cut(s) 1255
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 1 cut(s) 2942
BaeGI GKGCMC 1 cut(s) 1923
BaeI ACNNNNGTAYC 2 cut(s) 1035, 1068
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 2 cut(s) 694, 1920
BanII GRGCYC 1 cut(s) 453
BarI GAAGNNNNNNTAC 4 cut(s) 2137, 2169, 2977, 3009
BbsI GAAGAC 2 cut(s) 730, 838
Bbv12I GWGCWC 1 cut(s) 453
BceAI ACGGC 1 cut(s) 1567
BciT130I CCWGG 6 cut(s) 195, 1340, 1558, 2246, 2302, 2982
BciVI GTATCC 2 cut(s) 1746, 1812
BclI TGATCA 1 cut(s) 1990
BcnI CCSGG 3 cut(s) 329, 2192, 3010
BcoDI GTCTC 8 cut(s) 113, 754, 761, 972, 1185, 1638, 1972, 2099
BcuI ACTAGT 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 1674
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 2 cut(s) 1370, 1932
BfuI GTATCC 2 cut(s) 1746, 1812
BglII AGATCT 1 cut(s) 1219
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 9 cut(s) 195, 329, 1340, 1558, 2192, 2246, 2302, 2982, 3010
Bme18I GGWCC 1 cut(s) 2942
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 2 cut(s) 657, 2942
BmiI GGNNCC 6 cut(s) 659, 696, 820, 903, 1922, 2170
BmrFI CCNGG 9 cut(s) 195, 329, 1340, 1558, 2192, 2246, 2302, 2982, 3010
BmrI ACTGGG 2 cut(s) 722, 1044
BmsI GCATC 7 cut(s) 1051, 1375, 1479, 1901, 1996, 2041, 2533
BmtI GCTAGC 1 cut(s) 1259
BmuI ACTGGG 2 cut(s) 722, 1044
BpiI GAAGAC 2 cut(s) 730, 838
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 4 cut(s) 383, 499, 2446, 2456
Bpu10I CCTNAGC 1 cut(s) 1510
BpuEI CTTGAG 3 cut(s) 437, 1835, 2661
BpuMI CCSGG 3 cut(s) 329, 2192, 3010
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 6 cut(s) 194, 1083, 1556, 1557, 2245, 2301
BsaWI WCCGGW 1 cut(s) 1180
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 91, 121
Bsc4I CCNNNNNNNGG 8 cut(s) 194, 608, 713, 1187, 2307, 2353, 2981, 2995
Bse1I ACTGG 9 cut(s) 352, 419, 482, 646, 717, 940, 1039, 1898, 2281
Bse3DI GCAATG 2 cut(s) 1921, 2346
BseAI TCCGGA 1 cut(s) 1180
BseBI CCWGG 6 cut(s) 195, 1340, 1558, 2246, 2302, 2982
BseDI CCNNGG 6 cut(s) 194, 1083, 1556, 1557, 2245, 2301
BseGI GGATG 8 cut(s) 583, 613, 1141, 1277, 1520, 1567, 2130, 2618
BseLI CCNNNNNNNGG 8 cut(s) 194, 608, 713, 1187, 2307, 2353, 2981, 2995
BseMI GCAATG 2 cut(s) 1921, 2346
BseMII CTCAG 4 cut(s) 756, 1524, 2150, 2223
BseNI ACTGG 9 cut(s) 352, 419, 482, 646, 717, 940, 1039, 1898, 2281
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 1923
BsgI GTGCAG 3 cut(s) 642, 1857, 2396
Bsh1236I CGCG 2 cut(s) 2014, 2456
BshFI GGCC 7 cut(s) 372, 612, 658, 954, 1082, 1897, 2442
BshNI GGYRCC 2 cut(s) 694, 1920
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 4 cut(s) 329, 1181, 2191, 3010
BslFI GGGAC 1 cut(s) 2388
BslI CCNNNNNNNGG 8 cut(s) 194, 608, 713, 1187, 2307, 2353, 2981, 2995
BsmAI GTCTC 8 cut(s) 113, 754, 761, 972, 1185, 1638, 1972, 2099
BsmBI CGTCTC 2 cut(s) 113, 2099
BsmFI GGGAC 1 cut(s) 2388
BsmI GAATGC 4 cut(s) 260, 1551, 1951, 2630
BsnI GGCC 7 cut(s) 372, 612, 658, 954, 1082, 1897, 2442
Bso31I GGTCTC 1 cut(s) 754
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 453, 1923
Bsp13I TCCGGA 1 cut(s) 1180
Bsp1407I TGTACA 1 cut(s) 1476
BspACI CCGC 4 cut(s) 750, 2014, 2082, 2456
BspANI GGCC 7 cut(s) 372, 612, 658, 954, 1082, 1897, 2442
BspCNI CTCAG 4 cut(s) 757, 1523, 2151, 2224
BspEI TCCGGA 1 cut(s) 1180
BspFNI CGCG 2 cut(s) 2014, 2456
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 6 cut(s) 659, 696, 820, 903, 1922, 2170
BspMAI CTGCAG 1 cut(s) 1678
BspMI ACCTGC 2 cut(s) 1370, 1932
BspOI GCTAGC 1 cut(s) 1259
BspPI GGATC 2 cut(s) 1738, 1839
BspT107I GGYRCC 2 cut(s) 694, 1920
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 1921, 2346
BsrGI TGTACA 1 cut(s) 1476
BsrI ACTGG 9 cut(s) 352, 419, 482, 646, 717, 940, 1039, 1898, 2281
BssECI CCNNGG 6 cut(s) 194, 1083, 1556, 1557, 2245, 2301
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 6 cut(s) 195, 1340, 1558, 2246, 2302, 2982
Bst4CI ACNGT 4 cut(s) 1015, 1621, 2753, 2998
Bst6I CTCTTC 4 cut(s) 228, 2158, 2219, 2886
BstAPI GCANNNNNTGC 2 cut(s) 1385, 1927
BstAUI TGTACA 1 cut(s) 1476
BstC8I GCNNGC 6 cut(s) 258, 353, 614, 1257, 1367, 1403
BstDEI CTNAG 5 cut(s) 765, 1510, 2100, 2159, 2232
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 8 cut(s) 583, 613, 1141, 1277, 1520, 1567, 2130, 2618
BstFNI CGCG 2 cut(s) 2014, 2456
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 2 cut(s) 486, 1884
BstMAI GTCTC 8 cut(s) 113, 754, 761, 972, 1185, 1638, 1972, 2099
BstNI CCWGG 6 cut(s) 195, 1340, 1558, 2246, 2302, 2982
BstNSI RCATGY 6 cut(s) 251, 260, 355, 1651, 2257, 2423
BstSCI CCNGG 9 cut(s) 193, 327, 1338, 1556, 2190, 2244, 2300, 2980, 3008
BstSFI CTRYAG 1 cut(s) 1674
BstSLI GKGCMC 1 cut(s) 1923
BstUI CGCG 2 cut(s) 2014, 2456
BstV2I GAAGAC 2 cut(s) 730, 838
BstX2I RGATCY 2 cut(s) 1219, 1831
BstXI CCANNNNNNTGG 2 cut(s) 347, 414
BstYI RGATCY 2 cut(s) 1219, 1831
BsuI GTATCC 2 cut(s) 1746, 1812
BsuRI GGCC 7 cut(s) 372, 612, 658, 954, 1082, 1897, 2442
BtsCI GGATG 8 cut(s) 583, 613, 1141, 1277, 1520, 1567, 2130, 2618
BtsIMutI CAGTG 3 cut(s) 345, 447, 1891
BveI ACCTGC 2 cut(s) 1370, 1932
Cac8I GCNNGC 6 cut(s) 258, 353, 614, 1257, 1367, 1403
CaiI CAGNNNCTG 1 cut(s) 10
CciI TCATGA 1 cut(s) 628
CfoI GCGC 2 cut(s) 486, 1884
Cfr13I GGNCC 2 cut(s) 657, 2942
Csp6I GTAC 9 cut(s) 667, 892, 1032, 1052, 1477, 1545, 2178, 2311, 2897
CspCI CAANNNNNGTGG 4 cut(s) 122, 157, 1999, 2034
CviQI GTAC 9 cut(s) 667, 892, 1032, 1052, 1477, 1545, 2178, 2311, 2897
DdeI CTNAG 5 cut(s) 765, 1510, 2100, 2159, 2232
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 4 cut(s) 228, 2158, 2219, 2886
EarI CTCTTC 4 cut(s) 228, 2158, 2219, 2886
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 1083
Eco147I AGGCCT 1 cut(s) 2442
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 2 cut(s) 1159, 1753
Eco47I GGWCC 1 cut(s) 2942
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 1317, 2544
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 1319
EcoRII CCWGG 6 cut(s) 193, 1338, 1556, 2244, 2300, 2980
EcoRV GATATC 2 cut(s) 1159, 1753
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 3 cut(s) 262, 793, 2056
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 1083
Esp3I CGTCTC 2 cut(s) 113, 2099
FalI AAGNNNNNCTT 6 cut(s) 722, 754, 726, 758, 2264, 2296
FaqI GGGAC 1 cut(s) 2388
FauNDI CATATG 1 cut(s) 1481
FbaI TGATCA 1 cut(s) 1990
FokI GGATG 8 cut(s) 590, 620, 1148, 1264, 1527, 1574, 2137, 2625
FriOI GRGCYC 1 cut(s) 453
FspI TGCGCA 1 cut(s) 1883
GlaI GCGC 2 cut(s) 485, 1883
GsuI CTGGAG 4 cut(s) 383, 499, 2446, 2456
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 7 cut(s) 372, 612, 658, 954, 1082, 1897, 2442
HapII CCGG 4 cut(s) 329, 1181, 2191, 3010
HhaI GCGC 2 cut(s) 486, 1884
Hin6I GCGC 2 cut(s) 484, 1882
HinP1I GCGC 2 cut(s) 484, 1882
HincII GTYRAC 2 cut(s) 1011, 1275
HindII GTYRAC 2 cut(s) 1011, 1275
HinfI GANTC 8 cut(s) 170, 403, 1592, 1843, 2150, 2498, 2507, 2968
HpaII CCGG 4 cut(s) 329, 1181, 2191, 3010
HphI GGTGA 4 cut(s) 656, 1394, 1445, 1619
Hpy166II GTNNAC 6 cut(s) 669, 1011, 1052, 1275, 1292, 1547
Hpy8I GTNNAC 6 cut(s) 669, 1011, 1052, 1275, 1292, 1547
HpyCH4III ACNGT 4 cut(s) 1015, 1621, 2753, 2998
HpyCH4IV ACGT 1 cut(s) 2092
HpyF3I CTNAG 5 cut(s) 765, 1510, 2100, 2159, 2232
HpySE526I ACGT 1 cut(s) 2092
HspAI GCGC 2 cut(s) 484, 1882
Kpn2I TCCGGA 1 cut(s) 1180
Ksp22I TGATCA 1 cut(s) 1990
LmnI GCTCC 7 cut(s) 330, 491, 818, 1069, 1362, 1664, 2398
LweI GCATC 7 cut(s) 1051, 1375, 1479, 1901, 1996, 2041, 2533
MaeII ACGT 1 cut(s) 2092
MaeIII GTNAC 4 cut(s) 47, 473, 584, 1632
MfeI CAATTG 2 cut(s) 1986, 2502
MflI RGATCY 2 cut(s) 1219, 1831
MhlI GDGCHC 2 cut(s) 453, 1923
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 2 cut(s) 2144, 2492
MmeI TCCRAC 1 cut(s) 1686
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 3 cut(s) 262, 793, 2056
MroI TCCGGA 1 cut(s) 1180
MroXI GAANNNNTTC 3 cut(s) 651, 737, 2167
MscI TGGCCA 1 cut(s) 612
MseI TTAA 9 cut(s) 14, 305, 873, 1094, 1770, 2595, 2630, 2651, 2868
MslI CAYNNNNRTG 3 cut(s) 350, 503, 680
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 4 cut(s) 329, 1181, 2191, 3010
MspR9I CCNGG 9 cut(s) 195, 329, 1340, 1558, 2192, 2246, 2302, 2982, 3010
MunI CAATTG 2 cut(s) 1986, 2502
Mva1269I GAATGC 4 cut(s) 260, 1551, 1951, 2630
MvaI CCWGG 6 cut(s) 195, 1340, 1558, 2246, 2302, 2982
MvnI CGCG 2 cut(s) 2014, 2456
NciI CCSGG 3 cut(s) 329, 2192, 3010
NdeI CATATG 1 cut(s) 1481
NheI GCTAGC 1 cut(s) 1255
NlaIV GGNNCC 6 cut(s) 659, 696, 820, 903, 1922, 2170
NmuCI GTSAC 1 cut(s) 473
NsbI TGCGCA 1 cut(s) 1883
NsiI ATGCAT 3 cut(s) 262, 793, 2056
NspI RCATGY 6 cut(s) 251, 260, 355, 1651, 2257, 2423
PaeI GCATGC 2 cut(s) 260, 355
PaeR7I CTCGAG 1 cut(s) 432
PagI TCATGA 1 cut(s) 628
PaqCI CACCTGC 2 cut(s) 1370, 1932
PasI CCCWGGG 1 cut(s) 1557
PceI AGGCCT 1 cut(s) 2442
PciI ACATGT 2 cut(s) 1647, 2419
PctI GAATGC 4 cut(s) 260, 1551, 1951, 2630
PdmI GAANNNNTTC 3 cut(s) 651, 737, 2167
PfeI GAWTC 6 cut(s) 170, 403, 1592, 1843, 2507, 2968
PflFI GACNNNGTC 1 cut(s) 2192
PflMI CCANNNNNTGG 2 cut(s) 2307, 2353
PfoI TCCNGGA 2 cut(s) 1338, 2980
PleI GAGTC 2 cut(s) 2144, 2492
PpsI GAGTC 2 cut(s) 2144, 2492
PscI ACATGT 2 cut(s) 1647, 2419
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 6 cut(s) 193, 1338, 1556, 2244, 2300, 2980
PspGI CCWGG 6 cut(s) 193, 1338, 1556, 2244, 2300, 2980
PspN4I GGNNCC 6 cut(s) 659, 696, 820, 903, 1922, 2170
PspPI GGNCC 2 cut(s) 657, 2942
PspXI VCTCGAGB 1 cut(s) 432
PstI CTGCAG 1 cut(s) 1678
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 1219, 1831
PsyI GACNNNGTC 1 cut(s) 2192
RsaI GTAC 9 cut(s) 668, 893, 1033, 1053, 1478, 1546, 2179, 2312, 2898
RsaNI GTAC 9 cut(s) 667, 892, 1032, 1052, 1477, 1545, 2178, 2311, 2897
RseI CAYNNNNRTG 3 cut(s) 350, 503, 680
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 9 cut(s) 14, 305, 873, 1094, 1770, 2595, 2630, 2651, 2868
Sau96I GGNCC 2 cut(s) 657, 2942
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 2 cut(s) 2144, 2492
ScrFI CCNGG 9 cut(s) 195, 329, 1340, 1558, 2192, 2246, 2302, 2982, 3010
SduI GDGCHC 2 cut(s) 453, 1923
SfaNI GCATC 7 cut(s) 1051, 1375, 1479, 1901, 1996, 2041, 2533
SfcI CTRYAG 1 cut(s) 1674
Sfr274I CTCGAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 2942
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 3 cut(s) 350, 503, 680
SmlI CTYRAG 4 cut(s) 432, 452, 1814, 2676
SmoI CTYRAG 4 cut(s) 432, 452, 1814, 2676
SpeI ACTAGT 1 cut(s) 1046
SphI GCATGC 2 cut(s) 260, 355
SseBI AGGCCT 1 cut(s) 2442
SsiI CCGC 4 cut(s) 750, 2014, 2082, 2456
SspI AATATT 2 cut(s) 1796, 2215
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 2442
StyD4I CCNGG 9 cut(s) 193, 327, 1338, 1556, 2190, 2244, 2300, 2980, 3008
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 4 cut(s) 1015, 1621, 2753, 2998
TaiI ACGT 1 cut(s) 2095
TaqI TCGA 6 cut(s) 78, 272, 410, 433, 1528, 1578
TaqII GACCGA 1 cut(s) 1712
TatI WGTACW 3 cut(s) 666, 891, 1476
TauI GCSGC 2 cut(s) 752, 2084
TfiI GAWTC 6 cut(s) 170, 403, 1592, 1843, 2507, 2968
Tru1I TTAA 9 cut(s) 14, 305, 873, 1094, 1770, 2595, 2630, 2651, 2868
Tru9I TTAA 9 cut(s) 14, 305, 873, 1094, 1770, 2595, 2630, 2651, 2868
TscAI CASTG 3 cut(s) 352, 447, 1898
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspGWI ACGGA 2 cut(s) 572, 2625
TspRI CASTG 3 cut(s) 352, 447, 1898
Tth111I GACNNNGTC 1 cut(s) 2192
Van91I CCANNNNNTGG 2 cut(s) 2307, 2353
VpaK11BI GGWCC 1 cut(s) 2942
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 4 cut(s) 1176, 1319, 1963, 2759
XceI RCATGY 6 cut(s) 251, 260, 355, 1651, 2257, 2423
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 432
XmnI GAANNNNTTC 3 cut(s) 651, 737, 2167
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 3 cut(s) 262, 793, 2056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.