Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

37069970 .. 37070563

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATGACGATGTTGAGAATGGGAAGTACTCTTCGTATGAGGTCGTTGCAGCTCATGTATGGAGATCTGCTTGCAAGGCACCTCAACTTGTTTATGATGAAGAGACATAATTCAACATTGCCGCAAATGGAAGGTGACCTCATGTCCAAACGGATAAGTTACGCTGCGAGCTGCATTCACAAGGCTTTGGTGCGTATGGACGATGATTATCTCCGGTCGGCCCTCGACTATCTTGATCTTCAGCAATCTCATCATCATCTGTCGAGCCTTGCTCGCTCAGCTCATTACTATAAGAGCCCTAATCTTAGGATAACAAGCTGGGTTACGCTGCCTATATATGATGCTGATGATTTTGGATGGGGTCGACCAGTTTTCATGGGACGCGCTGAACTTTCATTTGAAGGGAAGGCTTACATGGTGTCAAGTGCAAGTGATGATGGGAGTTTCTCACTGGCCATTTCTCTGCAGTCTCGACATACGGATTCATTTTCCAAGTTGATTTACGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

8.69

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	41 - 167	2.8e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	2 cut(s)	114, 401
AhdI	GACNNNNNGTC	1 cut(s)	142
AluBI	AGCT	4 cut(s)	52, 171, 281, 318
AluI	AGCT	4 cut(s)	52, 171, 281, 318
Alw26I	GTCTC	2 cut(s)	97, 474
AoxI	GGCC	2 cut(s)	219, 453
ApeKI	GCWGC	4 cut(s)	49, 164, 171, 328
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	61, 151, 158, 315
BccI	CCATC	2 cut(s)	351, 431
BcoDI	GTCTC	2 cut(s)	97, 474
BfmI	CTRYAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	5 cut(s)	50, 122, 165, 172, 329
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	5 cut(s)	51, 123, 166, 173, 330
BmcAI	AGTACT	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu1102I	GCTNAGC	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	368, 456
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	207
BseGI	GGATG	1 cut(s)	362
BseJI	GATNNNNATC	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	368, 456
BseXI	GCAGC	4 cut(s)	61, 151, 158, 315
BseYI	CCCAGC	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	221, 455
BshNI	GGYRCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	97, 474
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	221, 455
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	64, 235
Bsp1720I	GCTNAGC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	221, 455
BspCNI	CTCAG	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	368, 456
BssMI	GATC	2 cut(s)	64, 235
Bst6I	CTCTTC	2 cut(s)	36, 95
BstC8I	GCNNGC	3 cut(s)	72, 169, 274
BstDEI	CTNAG	2 cut(s)	277, 305
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	2 cut(s)	67, 238
BstMAI	GTCTC	2 cut(s)	97, 474
BstMBI	GATC	2 cut(s)	64, 235
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 273, 278
BstNSI	RCATGY	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	4 cut(s)	61, 151, 158, 315
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	221, 455
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	72, 169, 274
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	5 cut(s)	55, 142, 376, 415, 508
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	277, 305
DpnI	GATC	2 cut(s)	66, 237
DpnII	GATC	2 cut(s)	64, 235
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	36, 95
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	2 cut(s)	36, 95
Eco24I	GRGCYC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	5 cut(s)	58, 145, 379, 418, 511
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	5 cut(s)	54, 141, 375, 414, 507
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	50, 122, 165, 172, 329
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	5 cut(s)	50, 122, 165, 172, 329
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	5 cut(s)	50, 122, 165, 172, 329
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	221, 455
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	5 cut(s)	58, 145, 379, 418, 511
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	233, 471
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	125, 395, 400
HpyCH4V	TGCA	5 cut(s)	49, 74, 174, 428, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 273, 278
HpyF3I	CTNAG	2 cut(s)	277, 305
Hsp92II	CATG	5 cut(s)	58, 145, 379, 418, 511
HspAI	GCGC	1 cut(s)	384
Kzo9I	GATC	2 cut(s)	64, 235
LpnPI	CCDG	4 cut(s)	227, 304, 381, 437
Lsp1109I	GCAGC	4 cut(s)	61, 151, 158, 315
LweI	GCATC	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	134, 158, 322
MalI	GATC	2 cut(s)	66, 237
MboI	GATC	2 cut(s)	64, 235
MboII	GAAGA	3 cut(s)	23, 112, 230
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	1 cut(s)	109
MluNI	TGGCCA	1 cut(s)	455
MnlI	CCTC	4 cut(s)	33, 92, 149, 233
Mox20I	TGGCCA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	1 cut(s)	214
Mva1269I	GAATGC	1 cut(s)	174
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	76, 273, 278
NdeII	GATC	2 cut(s)	64, 235
NlaIII	CATG	5 cut(s)	58, 145, 379, 418, 511
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	511
PciI	ACATGT	1 cut(s)	507
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	51, 123, 166, 173, 330
PscI	ACATGT	1 cut(s)	507
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	363
SatI	GCNGC	5 cut(s)	50, 122, 165, 172, 329
Sau3AI	GATC	2 cut(s)	64, 235
Sau96I	GGNCC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	8 cut(s)	44, 54, 84, 136, 141, 173, 283, 320
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	122
TaqI	TCGA	4 cut(s)	225, 263, 364, 472
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	482
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	4 cut(s)	49, 164, 171, 328
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	113, 364, 384, 474
TspGWI	ACGGA	2 cut(s)	166, 494
TspRI	CASTG	1 cut(s)	456
XceI	RCATGY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	364
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.