Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

53046345 .. 53046674

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG358200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCAGCGTTTACTTCTACCGGAGGCAAACCGGTGTCCTTGATGATAACTTCTTCGAGCCGCGCGTGCTAAAGGACGTACTCAGCCAGGTCCTCGTGCCCTTCTACCCCATAGCCGGTCGACTGATGCGAAACGAGGATGTCGGCTCCAAATCGATTGCAATGCGGAGGGCGTGTTGTTTGTTGAGGCGGAGAGCAACTCCGTCGTGGATGACTTTGGGGACTTTGCTCCCACCCTCGAGTTCCGGCGGCTCATCCCCGCCGTTGATTATACTGCTGGGATATCCTCTTATCCCCTCTTGGTCTTACAGGTATTCAGCGTATACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

109

Amino Acids

12.31

Weight (kDa)

9.93

Isoelectric Point (pI)

70.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	3 - 47	9.1e-06	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	121, 323
AccII	CGCG	2 cut(s)	64, 66
AciI	CCGC	5 cut(s)	62, 166, 190, 249, 260
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	3
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	4 cut(s)	145, 179, 186, 220
BciT130I	CCWGG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	62, 250
BlsI	GCNGC	2 cut(s)	63, 251
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bsa29I	ATCGAT	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	21, 32
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	2 cut(s)	32, 116
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	155
BseGI	GGATG	3 cut(s)	145, 216, 254
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	64, 66
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	4 cut(s)	22, 33, 117, 246
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	5 cut(s)	62, 166, 190, 249, 260
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	96
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	2 cut(s)	64, 66
BspLI	GGNNCC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	2 cut(s)	32, 116
BssAI	RCCGGY	2 cut(s)	32, 116
BssNAI	GTATAC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	7, 68
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	3 cut(s)	145, 216, 254
BstFNI	CGCG	2 cut(s)	64, 66
BstHHI	GCGC	1 cut(s)	66
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	102
BstSNI	TACGTA	1 cut(s)	327
BstUI	CGCG	2 cut(s)	64, 66
BstZ17I	GTATAC	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	145, 216, 254
Cac8I	GCNNGC	2 cut(s)	7, 68
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	2 cut(s)	32, 116
Cfr13I	GGNCC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	32
CviJI	RGCY	6 cut(s)	5, 61, 87, 116, 147, 252
CviKI_1	RGCY	6 cut(s)	5, 61, 87, 116, 147, 252
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	284
FaiI	YATR	3 cut(s)	113, 272, 324
FaqI	GGGAC	1 cut(s)	235
FauI	CCCGC	1 cut(s)	267
FblI	GTMKAC	2 cut(s)	121, 323
Fnu4HI	GCNGC	2 cut(s)	62, 250
FokI	GGATG	3 cut(s)	152, 223, 241
Fsp4HI	GCNGC	2 cut(s)	62, 250
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	62, 250
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	22, 33, 117, 246
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	122
HindII	GTYRAC	1 cut(s)	122
HpaII	CCGG	4 cut(s)	22, 33, 117, 246
Hpy166II	GTNNAC	3 cut(s)	13, 122, 324
Hpy8I	GTNNAC	3 cut(s)	13, 122, 324
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	78, 326
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	2 cut(s)	78, 326
HspAI	GCGC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	152, 234
LpnPI	CCDG	9 cut(s)	19, 35, 46, 74, 101, 130, 259, 263, 295
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	2 cut(s)	78, 326
MboII	GAAGA	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	8 cut(s)	18, 104, 130, 162, 180, 247, 297, 307
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	22, 33, 117, 246
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	64, 66
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 127
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	63, 251
Ppu21I	YACGTR	1 cut(s)	327
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	238
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	120
SatI	GCNGC	2 cut(s)	62, 250
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	81, 93, 314, 329
SfaNI	GCATC	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SnaBI	TACGTA	1 cut(s)	327
SsiI	CCGC	5 cut(s)	62, 166, 190, 249, 260
StyD4I	CCNGG	1 cut(s)	87
TaiI	ACGT	2 cut(s)	81, 329
TaqI	TCGA	4 cut(s)	57, 121, 155, 239
TauI	GCSGC	2 cut(s)	64, 252
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	238
XmiI	GTMKAC	2 cut(s)	121, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.