Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

28418107 .. 28419070

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1230000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCAGAAGGTCACATACTTCAAATGTGGTGGAGTGTCGCTTGGGGTCGGCCTGGAACATCGAGTGGCAGATGGGTGTTCAGGTCTCCACTTTGTAAATGCATGGTCTGATATCGCCCGCGGACTTGACCTTAAAATCCCACCATTCATCGACAGGACATTACTTCGTGCCCGAGACCCACCTCAGCCAACATTTGACCCCGTTGAATACCAGCCTGATCCGCCCTTAAAAATTCCTCCGCTCTGCACAAAAGATGGTGGTGCCGAGAGTACGACAGTCTCCATTTTTAGATTGACGCGGGAGCAGCTTAGCATCTTGAAAGCGAAGTCTAAGGAAGAAGGGAACACAATCAACTATAGCACATATGAGATGTTGGCAAGCCATGTTTGGATATGTGCATCCAAGGCACGTAATCTTCCCGATGATCAAGTGACCAAACTGCATATTGCGGTTGATGGACGGTCCAGACTGCAACCCCCACTCCCACTTGGTTTCTTTGGCAATGTGGTTTTCGCAGGCGCACCATTAGCTACAGTGAGGGATCTCAAATCAAAACCAACATGGTATGTTGCCAGCCGTATACATGATGTTGTGGTGCGCATGAACAACGATTACCTTAGGTCAGCTCTTGACTATCTTGACGTTCAGCCTGATCTGTCGGCCCTTGTTCGCGGTGCTCATACTTTTCGATGCCCAAAACTTGGGATAACTAGTTGGGTGAGGCTGCCGATATACGAAGCAGATTTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

251

Amino Acids

27.79

Weight (kDa)

8.77

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	3 - 250	2.5e-49	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	580
AccII	CGCG	3 cut(s)	120, 298, 672
AciI	CCGC	7 cut(s)	118, 120, 221, 239, 298, 449, 672
AclWI	GGATC	2 cut(s)	212, 549
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	3 cut(s)	22, 206, 319
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	1 cut(s)	729
AluBI	AGCT	3 cut(s)	307, 530, 626
AluI	AGCT	3 cut(s)	307, 530, 626
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	89, 168, 283
AlwI	GGATC	2 cut(s)	212, 549
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	49, 660
ApeKI	GCWGC	2 cut(s)	304, 724
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	521, 600
AspS9I	GGNCC	2 cut(s)	462, 661
AsuHPI	GGTGA	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	316, 711
BccI	CCATC	3 cut(s)	65, 248, 449
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	89, 168, 283
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	2 cut(s)	711, 751
BfmI	CTRYAG	2 cut(s)	355, 531
BisI	GCNGC	2 cut(s)	305, 725
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	306, 726
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	462, 661
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	321, 407, 680
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	410
BsaI	GGTCTC	2 cut(s)	89, 168
BsaJI	CCNNGG	2 cut(s)	118, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse21I	CCTNAGG	1 cut(s)	617
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	118, 402
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	316, 711
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	120, 298, 672
BshFI	GGCC	2 cut(s)	51, 662
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	3 cut(s)	89, 168, 283
BsnI	GGCC	2 cut(s)	51, 662
Bso31I	GGTCTC	2 cut(s)	89, 168
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	172, 679
Bsp143I	GATC	4 cut(s)	217, 424, 541, 652
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	7 cut(s)	118, 120, 221, 239, 298, 449, 672
BspANI	GGCC	2 cut(s)	51, 662
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	3 cut(s)	120, 298, 672
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	212, 549
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	2 cut(s)	89, 168
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	118, 402
BssMI	GATC	4 cut(s)	217, 424, 541, 652
BssNAI	GTATAC	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	402
Bst1107I	GTATAC	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	277, 462, 535
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	4 cut(s)	118, 379, 517, 574
BstDEI	CTNAG	4 cut(s)	183, 308, 330, 617
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	3 cut(s)	120, 298, 672
BstHHI	GCGC	2 cut(s)	521, 600
BstKTI	GATC	4 cut(s)	220, 427, 544, 655
BstMAI	GTCTC	3 cut(s)	89, 168, 283
BstMBI	GATC	4 cut(s)	217, 424, 541, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 304, 404, 527
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	2 cut(s)	355, 531
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	3 cut(s)	120, 298, 672
BstV1I	GCAGC	2 cut(s)	316, 711
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BstZ17I	GTATAC	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	51, 662
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	4 cut(s)	118, 379, 517, 574
CfoI	GCGC	2 cut(s)	521, 600
Cfr13I	GGNCC	2 cut(s)	462, 661
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	5 cut(s)	102, 383, 561, 584, 601
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	4 cut(s)	183, 308, 330, 617
DpnI	GATC	4 cut(s)	219, 426, 543, 654
DpnII	GATC	4 cut(s)	217, 424, 541, 652
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	2 cut(s)	89, 168
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	5 cut(s)	105, 386, 564, 587, 604
FatI	CATG	5 cut(s)	101, 382, 560, 583, 600
FauI	CCCGC	2 cut(s)	125, 291
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	305, 725
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	2 cut(s)	305, 725
FspAI	RTGCGCAY	1 cut(s)	599
FspBI	CTAG	2 cut(s)	711, 751
FspI	TGCGCA	1 cut(s)	599
GlaI	GCGC	2 cut(s)	520, 599
GluI	GCNGC	2 cut(s)	305, 725
HaeIII	GGCC	2 cut(s)	51, 662
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	521, 600
Hin1II	CATG	5 cut(s)	105, 386, 564, 587, 604
Hin6I	GCGC	2 cut(s)	519, 598
HinP1I	GCGC	2 cut(s)	519, 598
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	5 cut(s)	316, 419, 465, 629, 638
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	277, 462, 535
HpyCH4IV	ACGT	2 cut(s)	409, 642
HpyCH4V	TGCA	6 cut(s)	4, 101, 246, 398, 442, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 304, 404, 527
HpyF3I	CTNAG	4 cut(s)	183, 308, 330, 617
HpySE526I	ACGT	2 cut(s)	409, 642
Hsp92II	CATG	5 cut(s)	105, 386, 564, 587, 604
HspAI	GCGC	2 cut(s)	519, 598
Ksp22I	TGATCA	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	217, 424, 541, 652
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	316, 711
LweI	GCATC	3 cut(s)	321, 407, 680
MaeI	CTAG	2 cut(s)	711, 751
MaeII	ACGT	2 cut(s)	409, 642
MaeIII	GTNAC	2 cut(s)	10, 430
MalI	GATC	4 cut(s)	219, 426, 543, 654
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	4 cut(s)	217, 424, 541, 652
MboII	GAAGA	2 cut(s)	347, 407
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	172, 679
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	4 cut(s)	192, 246, 531, 714
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	2 cut(s)	132, 227
MspA1I	CMGCKG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	3 cut(s)	120, 298, 672
MwoI	GCNNNNNNNGC	4 cut(s)	220, 304, 404, 527
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	4 cut(s)	217, 424, 541, 652
NlaIII	CATG	5 cut(s)	105, 386, 564, 587, 604
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	10, 430
NsbI	TGCGCA	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	306, 726
Ppu21I	YACGTR	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	462, 661
PsrI	GAACNNNNNNTAC	2 cut(s)	596, 628
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	132, 227
SatI	GCNGC	2 cut(s)	305, 725
Sau3AI	GATC	4 cut(s)	217, 424, 541, 652
Sau96I	GGNCC	2 cut(s)	462, 661
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	172, 679
SfaNI	GCATC	3 cut(s)	321, 407, 680
SfcI	CTRYAG	2 cut(s)	355, 531
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	7 cut(s)	118, 120, 221, 239, 298, 449, 672
SspMI	CTAG	2 cut(s)	711, 751
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	3 cut(s)	277, 462, 535
TaiI	ACGT	2 cut(s)	412, 645
TaqI	TCGA	3 cut(s)	61, 150, 688
TasI	AATT	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	132, 227
Tru9I	TTAA	2 cut(s)	132, 227
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	10, 430
TseI	GCWGC	2 cut(s)	304, 724
Tsp45I	GTSAC	2 cut(s)	10, 430
TspDTI	ATGAA	2 cut(s)	136, 617
TspRI	CASTG	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	580
XspI	CTAG	2 cut(s)	711, 751
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.