Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012629.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 204

Gene Structure 203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 203 bp

atgaaaactcctcttgatgctgctcagatgacaccaacagtggtctccattttcaagctgacaccagaccagctcaacaccttgaaagccaagtttaaacaagatgggaacaacaccatcaagttcagctcatatgaaatgttggcaggtcatatatggcgatgtgcatgcaaggcacgccgactccccgatgatcaagagac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

68

Amino Acids

7.71

Weight (kDa)

9.1

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	55, 85
AluBI	AGCT	3 cut(s)	58, 73, 129
AluI	AGCT	3 cut(s)	58, 73, 129
Alw26I	GTCTC	2 cut(s)	49, 194
ApeKI	GCWGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	98, 125
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	49, 194
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	7
BsmAI	GTCTC	2 cut(s)	49, 194
Bso31I	GGTCTC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	49
BssMI	GATC	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	169, 178
BstDEI	CTNAG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	49, 194
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 177
BstNSI	RCATGY	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	169, 178
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	58, 73, 89, 129
CviKI_1	RGCY	4 cut(s)	58, 73, 89, 129
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DraI	TTTAAA	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	171
FaiI	YATR	6 cut(s)	133, 135, 153, 155, 157, 169
FatI	CATG	1 cut(s)	167
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	171
HinfI	GANTC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	14, 197
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	167, 171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 177
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	78, 83, 132
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	7
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	96
MssI	GTTTAAAC	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	173, 177
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	171
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	177
PmeI	GTTTAAAC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	177
SetI	ASST	5 cut(s)	60, 75, 83, 131, 151
SfaNI	GCATC	1 cut(s)	7
SphI	GCATGC	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	17, 150
TspRI	CASTG	1 cut(s)	45
XceI	RCATGY	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.