Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

17660066 .. 17662041

Gene Structure 1976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCAACCATGAACATAGCGGATGACGATGATATGACCACTTTACCAGTCAAGTATACCACATTTGAGGTGTTTGCTGGTCATGTATGGAGATGTGCCTGCAAGGCACGTGAACTAGCTAATGATCAAGAAACCAACTTATACTTTGCTGTAAATGGAAGGAACAGATTGCAACCCCCACTCCCACCTGGTTACTTTGGTAATGTGATTTTCAGAGCCGTAGCAACAGCCTTAGCGGGGGATCTCATATCAAAACCATTATCGTATGCCGCAAGCTGCATTCACAATGCTGTGGTGCGTATGGACGATGATTATGTTCGATCGGAACTTGACTATCTTGAACTTCAGCAGCGTCATCAGGATCTGTCAAGCCTTGCTCATGGGACTCATGTTATGTGCCCTAATCTTGGGATAACTAGCTGGTTTACGCTACCCCTCTATGATGCTGATTTTGGGTGGGGGCGTCCAAGTTTCATGGGACGTGCTGGAATTCCAAGTGAAGGGAAGGGCTACATGCAATCTAGTGCAACTGATGATGGGAGTTTGTCACTGTCCATTAGTCTGCAATCTCAGCATATGATATCATTTTCCAAGAATGTCTTGCTTAATCACCCTCGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

207

Amino Acids

23.0

Weight (kDa)

5.74

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	17 - 199	1.5e-44	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	3 cut(s)	20, 236, 270
AclWI	GGATC	2 cut(s)	249, 369
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	3 cut(s)	237, 407, 500
AgsI	TTSAA	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	119, 276, 420
AluI	AGCT	3 cut(s)	119, 276, 420
AlwI	GGATC	2 cut(s)	249, 369
AlwNI	CAGNNNCTG	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	276, 349
ApoI	RAATTY	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	401
BbrPI	CACGTG	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	263, 361
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	3 cut(s)	116, 417, 522
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	3 cut(s)	270, 277, 350
BlsI	GCNGC	3 cut(s)	271, 278, 351
Bme1390I	CCNGG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 407, 500
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	2 cut(s)	28, 624
BseLI	CCNNNNNNNGG	3 cut(s)	237, 407, 500
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	263, 361
Bsh1285I	CGRYCG	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	397, 492
BslI	CCNNNNNNNGG	3 cut(s)	237, 407, 500
BsmFI	GGGAC	2 cut(s)	397, 492
BsmI	GAATGC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	124, 241, 320, 361
BspACI	CCGC	3 cut(s)	20, 236, 270
BspCNI	CTCAG	1 cut(s)	583
BspPI	GGATC	2 cut(s)	249, 369
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	4 cut(s)	124, 241, 320, 361
BssNAI	GTATAC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	463
Bst1107I	GTATAC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	100, 274
BstDEI	CTNAG	2 cut(s)	232, 570
BstF5I	GGATG	2 cut(s)	28, 624
BstKTI	GATC	4 cut(s)	127, 244, 323, 364
BstMBI	GATC	4 cut(s)	124, 241, 320, 361
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 571
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	263, 361
BstX2I	RGATCY	2 cut(s)	241, 361
BstYI	RGATCY	2 cut(s)	241, 361
BstZ17I	GTATAC	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	28, 624
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	100, 274
CaiI	CAGNNNCTG	1 cut(s)	364
CseI	GACGC	2 cut(s)	341, 452
CsiI	ACCWGGT	1 cut(s)	187
CviAII	CATG	6 cut(s)	10, 83, 380, 389, 475, 514
CviJI	RGCY	7 cut(s)	119, 218, 230, 276, 372, 420, 510
CviKI_1	RGCY	7 cut(s)	119, 218, 230, 276, 372, 420, 510
DdeI	CTNAG	2 cut(s)	232, 570
DpnI	GATC	4 cut(s)	126, 243, 322, 363
DpnII	GATC	4 cut(s)	124, 241, 320, 361
Eco32I	GATATC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	582
FaeI	CATG	6 cut(s)	13, 86, 383, 392, 478, 517
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	2 cut(s)	397, 492
FatI	CATG	6 cut(s)	9, 82, 379, 388, 474, 513
FauI	CCCGC	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	3 cut(s)	270, 277, 350
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	270, 277, 350
FspBI	CTAG	3 cut(s)	116, 417, 522
GluI	GCNGC	3 cut(s)	270, 277, 350
HgaI	GACGC	2 cut(s)	341, 452
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	6 cut(s)	13, 86, 383, 392, 478, 517
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	4 cut(s)	6, 57, 113, 426
Hpy188I	TCNGA	3 cut(s)	215, 325, 618
Hpy188III	TCNNGA	3 cut(s)	128, 338, 359
Hpy8I	GTNNAC	4 cut(s)	6, 57, 113, 426
HpyAV	CCTTC	3 cut(s)	153, 494, 499
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	2 cut(s)	109, 481
HpyCH4V	TGCA	6 cut(s)	102, 172, 279, 517, 527, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 571
HpyF3I	CTNAG	2 cut(s)	232, 570
HpySE526I	ACGT	2 cut(s)	109, 481
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	6 cut(s)	13, 86, 383, 392, 478, 517
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	124, 241, 320, 361
LpnPI	CCDG	8 cut(s)	60, 63, 112, 174, 201, 344, 406, 471
Lsp1109I	GCAGC	2 cut(s)	263, 361
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	3 cut(s)	116, 417, 522
MaeII	ACGT	2 cut(s)	109, 481
MaeIII	GTNAC	2 cut(s)	191, 546
MalI	GATC	4 cut(s)	126, 243, 322, 363
MboI	GATC	4 cut(s)	124, 241, 320, 361
MflI	RGATCY	2 cut(s)	241, 361
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	61, 446, 624
MseI	TTAA	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	104, 571
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	4 cut(s)	124, 241, 320, 361
NlaIII	CATG	6 cut(s)	13, 86, 383, 392, 478, 517
NmuCI	GTSAC	1 cut(s)	546
NspI	RCATGY	1 cut(s)	517
PctI	GAATGC	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	271, 278, 351
Ple19I	CGATCG	1 cut(s)	323
PleI	GAGTC	1 cut(s)	379
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	241, 361
PvuI	CGATCG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	270, 277, 350
Sau3AI	GATC	4 cut(s)	124, 241, 320, 361
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	7 cut(s)	72, 112, 121, 190, 278, 422, 484
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	3 cut(s)	20, 236, 270
SspMI	CTAG	3 cut(s)	116, 417, 522
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	2 cut(s)	112, 484
TaqI	TCGA	1 cut(s)	319
TasI	AATT	1 cut(s)	489
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	276, 349
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	2 cut(s)	26, 463
TspRI	CASTG	1 cut(s)	555
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	3 cut(s)	116, 417, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.