Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

74507618 .. 74507926

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG470000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGATGATGATTATGTTCGATCGATACTCGACTATCTTGAACTTCAGCAGCGCCATCAGGATTTGTCAAGCCTTGCTCTTGTGACTCATGTTAGGTGCCCTAATCTTGCGATAACTAGCTGGTTTACGCTTCCCCTCTATGATGCTGATTTTGGGTGGGGGCGACCAAGTTTCATGGGACGCGCTGGAATTCCAAGTGAAGGAAAGGCTTACATGATACCAAGTGCAACTAATGATGGTTTCTCGCTGTGCATAAATTTGCATTCTCGGTATATGAACACATTTTCCAAGTTGGTTTATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

102

Amino Acids

11.64

Weight (kDa)

5.38

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 98	5.8e-14	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AccII	CGCG	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	189, 256
AcuI	CTGAAG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	41
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	189, 256
AspLEI	GCGC	2 cut(s)	54, 185
BaeGI	GKGCMC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	63, 230
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	23
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	96
BssMI	GATC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 185
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	10
CfoI	GCGC	2 cut(s)	54, 185
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	1 cut(s)	189
CviAII	CATG	3 cut(s)	89, 175, 214
CviJI	RGCY	3 cut(s)	72, 120, 209
CviKI_1	RGCY	3 cut(s)	72, 120, 209
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	189
FaeI	CATG	3 cut(s)	92, 178, 217
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	88, 174, 213
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	53, 184
GluI	GCNGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	55
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	54, 185
Hin1II	CATG	3 cut(s)	92, 178, 217
Hin6I	GCGC	2 cut(s)	52, 183
HinP1I	GCGC	2 cut(s)	52, 183
HinfI	GANTC	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	38, 59
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	227, 252, 262
Hsp92II	CATG	3 cut(s)	92, 178, 217
HspAI	GCGC	2 cut(s)	52, 183
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	44, 106, 171
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	189, 256
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	1 cut(s)	183
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	92, 178, 217
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	51
Ple19I	CGATCG	1 cut(s)	23
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	23
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	2 cut(s)	98, 122
SfaNI	GCATC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	189, 256
SspMI	CTAG	1 cut(s)	117
TaqI	TCGA	3 cut(s)	19, 23, 30
TasI	AATT	2 cut(s)	189, 256
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	163, 290
XapI	RAATTY	2 cut(s)	189, 256
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.