Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

28426658 .. 28427101

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1230100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGGTGAATGTTAGCGTGAGGGAGACGACGATAGTGAAGCCGGCGGAGGAGACGCCGAAGCAGGTTCTTTGGATGTCCAACTTGGACTTGGTGATTTTGAGCAAGCACACCCCCAGTGTCTACTTCTACAGGCGAAGCCAAACCGGCGGCCATCCCACCAGCCCCTTCTTCGACCCGGAACTGCTGAAGGGAGCCCTCTCCAAGGCCCTCGTACCGTTCTACCCCCTGGCGGGGCGCCTCCAGCAGAACGAAACAGGCCGTTCCGAAATCAACTGCAATGGGGAGGGCGTGCTGTTTGTTGTGGCGGAGACCGCCTCCGTCCTTGAGAATTTCGGCGATTTTGCGCCGACTCCCGAGTTCCGGAAGCTCATCCCCGTCGTCGATTATTCTGCTGGGATTTCCACTTATCCCCTCTTTGTGGTACAGGTATGTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

148

Amino Acids

16.2

Weight (kDa)

5.66

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 144	8.3e-36	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	6 cut(s)	5, 47, 150, 233, 308, 315
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	56, 238
AfaI	GTAC	2 cut(s)	216, 426
AfiI	CCNNNNNNNGG	6 cut(s)	205, 232, 233, 234, 363, 421
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	3 cut(s)	20, 47, 305
Ama87I	CYCGRG	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	3 cut(s)	151, 207, 259
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	240, 349
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	19, 106
AvaI	CYCGRG	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	199
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	20, 47, 305
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	179, 230
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	196, 239
BmrFI	CCNGG	2 cut(s)	179, 230
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	2 cut(s)	56, 238
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	204, 228
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 232, 233, 234, 363, 421
Bse118I	RCCGGY	2 cut(s)	43, 146
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	204, 228
BseGI	GGATG	3 cut(s)	81, 154, 372
BseLI	CCNNNNNNNGG	6 cut(s)	205, 232, 233, 234, 363, 421
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	3 cut(s)	153, 209, 261
BshNI	GGYRCC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	44, 147, 179, 364
BslI	CCNNNNNNNGG	6 cut(s)	205, 232, 233, 234, 363, 421
BsmAI	GTCTC	3 cut(s)	20, 47, 305
BsmBI	CGTCTC	2 cut(s)	20, 47
BsnI	GGCC	3 cut(s)	153, 209, 261
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	363
BspACI	CCGC	6 cut(s)	5, 47, 150, 233, 308, 315
BspANI	GGCC	3 cut(s)	153, 209, 261
BspEI	TCCGGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	196, 239
BspMI	ACCTGC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	2 cut(s)	43, 146
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	2 cut(s)	43, 146
BssECI	CCNNGG	2 cut(s)	204, 228
BssNI	GRCGYC	2 cut(s)	56, 238
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	56, 238
BstC8I	GCNNGC	3 cut(s)	45, 107, 293
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	3 cut(s)	81, 154, 372
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 349
BstMAI	GTCTC	3 cut(s)	20, 47, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 244, 314
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	177, 228
BstSFI	CTRYAG	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	153, 209, 261
BtsCI	GGATG	3 cut(s)	81, 154, 372
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	45, 107, 293
CfoI	GCGC	2 cut(s)	240, 349
Cfr10I	RCCGGY	2 cut(s)	43, 146
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	215, 425
CviJI	RGCY	8 cut(s)	43, 141, 153, 165, 197, 209, 261, 370
CviKI_1	RGCY	8 cut(s)	43, 141, 153, 165, 197, 209, 261, 370
CviQI	GTAC	2 cut(s)	215, 425
DinI	GGCGCC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	151
EciI	GGCGGA	2 cut(s)	62, 323
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	239
EheI	GGCGCC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	2 cut(s)	20, 47
FaiI	YATR	2 cut(s)	433, 439
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	3 cut(s)	88, 141, 359
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	151
GlaI	GCGC	2 cut(s)	239, 348
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	153, 209, 261
HapII	CCGG	4 cut(s)	44, 147, 179, 364
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	240, 349
Hin1I	GRCGYC	2 cut(s)	56, 238
Hin6I	GCGC	2 cut(s)	238, 347
HinP1I	GCGC	2 cut(s)	238, 347
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	4 cut(s)	44, 147, 179, 364
HphI	GGTGA	2 cut(s)	19, 106
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	356, 364
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	3 cut(s)	34, 383, 386
HpyAV	CCTTC	2 cut(s)	178, 184
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 244, 314
Hsp92I	GRCGYC	2 cut(s)	56, 238
HspAI	GCGC	2 cut(s)	238, 347
KasI	GGCGCC	1 cut(s)	237
Kpn2I	TCCGGA	1 cut(s)	363
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	194
MboII	GAAGA	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	331
Mly113I	GGCGCC	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	8 cut(s)	15, 43, 209, 221, 251, 280, 328, 425
MroI	TCCGGA	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	43
MspI	CCGG	4 cut(s)	44, 147, 179, 364
MspR9I	CCNGG	2 cut(s)	179, 230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	147, 244, 314
NaeI	GCCGGC	1 cut(s)	45
NarI	GGCGCC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	179
NgoMIV	GCCGGC	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	196, 239
PdiI	GCCGGC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	196, 239
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	216, 426
RsaNI	GTAC	2 cut(s)	215, 425
SatI	GCNGC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	179, 230
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	3 cut(s)	69, 372, 432
SfcI	CTRYAG	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	5, 47, 150, 233, 308, 315
SspDI	GGCGCC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	177, 228
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	174, 384
TasI	AATT	1 cut(s)	331
TauI	GCSGC	1 cut(s)	153
TscAI	CASTG	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.