Rh2AG358600

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
53168743 .. 53169591
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG358600.1

Sequence Viewer

Length: 849 bp
ATGGAACACCGGGTTGCAGATGGATATTCAGGTCTCCATCTTATAAATACATGGTCTGATATCGCTCGTGGCCTCGACCTTACAATTCCACCATTCATCGACCGCACACTACTATGTGCCCGAGATCCGCCCCGGCCTGCATTCCCCCACATCGAATACCAACCCGGTCCGTCTATGAAAACTCCTCTTGATGCTGCTGAGATGACACCAACAGTGGTCTCCATTTTCAAGCTGACACCAGACCGGCTCAACACCTTGAAAGCCAAGTTTAAACAAGATGGGAACAACACCATCAAGTTCAGCTCATATGAAATGTTGGCAGGTCATATATGGCGATGTGCATGCAAGGCACGCCGACTCCCCGATGATCAAGAGACCAAACTGCATGTCGCCACTGATGGAAGGTCCAGACTGAATCCTTCACTCCCTCCGGGTTACTTTGGCAACGTGATTTTCTCAGCCGGGCCATTCGCTACAGCAGGGGATCTCCAATCTAAACCGATTTGGTATGCTTCAAGTTGTATACAAAATGCTTTGGCACGTATGGACGATGAGTATCTTAGATCAGCAATCGACTATCTTGAGCTTCAGCCTGATCTTTCGGCACTTGTTCGCGGGGCTCATAGTTTTCGCTGCCCAAAAATGGGGATTACTAGTTGGGCTAGGCTGCCGATCCATGATGCTGATTTCGGCTGGGGTCGACCCATTTTCATGGGACCTGGAGGGATTGCATTTGAAGGCTTGTGCTTCATTTTACCGAGTGCAAGTAAAGACGGGAGCTTATCAGTGGCCATTTCACTCCAATCTGAACATATGAAATGGTTTTCGAAGTTCTTATATGACATATAA

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

7.66

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 277 3.8e-59 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 2 cut(s) 523, 700
AccII CGCG 1 cut(s) 615
AciI CCGC 3 cut(s) 103, 128, 615
AclWI GGATC 3 cut(s) 119, 492, 667
AcoI YGGCCR 1 cut(s) 789
AcuI CTGAAG 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 643, 644
AgsI TTSAA 4 cut(s) 229, 259, 516, 737
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 4 cut(s) 232, 303, 586, 780
AluI AGCT 4 cut(s) 232, 303, 586, 780
Alw26I GTCTC 3 cut(s) 38, 223, 368
AlwI GGATC 3 cut(s) 119, 492, 667
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 4 cut(s) 70, 134, 464, 789
ApeKI GCWGC 3 cut(s) 194, 633, 667
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AspS9I GGNCC 4 cut(s) 167, 405, 464, 716
AsuC2I CCSGG 5 cut(s) 11, 133, 165, 432, 463
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 167, 405, 716
BaeGI GKGCMC 1 cut(s) 121
BalI TGGCCA 1 cut(s) 791
BanII GRGCYC 1 cut(s) 622
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 3 cut(s) 181, 620, 654
BccI CCATC 5 cut(s) 14, 45, 272, 299, 392
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 1 cut(s) 720
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 5 cut(s) 11, 133, 165, 432, 463
BcoDI GTCTC 3 cut(s) 38, 223, 368
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 2 cut(s) 654, 663
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 3 cut(s) 195, 634, 668
BlsI GCNGC 3 cut(s) 196, 635, 669
Bme1390I CCNGG 6 cut(s) 11, 133, 165, 432, 463, 720
Bme18I GGWCC 3 cut(s) 167, 405, 716
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 167, 405, 464, 716
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 6 cut(s) 11, 133, 165, 432, 463, 720
BmsI GCATC 2 cut(s) 181, 670
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 5 cut(s) 11, 133, 165, 432, 463
BsaAI YACGTR 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 555
BsaI GGTCTC 3 cut(s) 38, 223, 368
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 643, 644
Bse118I RCCGGY 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 2 cut(s) 643, 644
BseMII CTCAG 2 cut(s) 189, 471
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 3 cut(s) 181, 620, 654
BseYI CCCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 4 cut(s) 72, 136, 466, 791
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 6 cut(s) 10, 133, 165, 244, 431, 462
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 643, 644
BsmAI GTCTC 3 cut(s) 38, 223, 368
BsmFI GGGAC 1 cut(s) 729
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 4 cut(s) 72, 136, 466, 791
Bso31I GGTCTC 3 cut(s) 38, 223, 368
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 121, 622
Bsp143I GATC 6 cut(s) 124, 367, 484, 563, 595, 672
BspACI CCGC 3 cut(s) 103, 128, 615
BspANI GGCC 4 cut(s) 72, 136, 466, 791
BspCNI CTCAG 2 cut(s) 190, 470
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 3 cut(s) 119, 492, 667
BspT104I TTCGAA 1 cut(s) 827
BspTNI GGTCTC 3 cut(s) 38, 223, 368
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 6 cut(s) 124, 367, 484, 563, 595, 672
BssNAI GTATAC 1 cut(s) 524
BssSI CACGAG 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 138, 343, 352
BstDEI CTNAG 3 cut(s) 198, 457, 560
BstFNI CGCG 1 cut(s) 615
BstKTI GATC 6 cut(s) 127, 370, 487, 566, 598, 675
BstMAI GTCTC 3 cut(s) 38, 223, 368
BstMBI GATC 6 cut(s) 124, 367, 484, 563, 595, 672
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 347, 351
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 2 cut(s) 345, 389
BstSCI CCNGG 6 cut(s) 9, 131, 163, 430, 461, 718
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 121
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 181, 620, 654
BstX2I RGATCY 2 cut(s) 124, 484
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 2 cut(s) 124, 484
BstZ17I GTATAC 1 cut(s) 524
BsuRI GGCC 4 cut(s) 72, 136, 466, 791
BtgZI GCGATG 1 cut(s) 349
BtsIMutI CAGTG 3 cut(s) 219, 393, 792
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 3 cut(s) 138, 343, 352
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 4 cut(s) 167, 405, 464, 716
CpoI CGGWCCG 1 cut(s) 167
CspI CGGWCCG 1 cut(s) 167
CviAII CATG 5 cut(s) 51, 342, 386, 677, 712
DdeI CTNAG 3 cut(s) 198, 457, 560
DpnI GATC 6 cut(s) 126, 369, 486, 565, 597, 674
DpnII GATC 6 cut(s) 124, 367, 484, 563, 595, 672
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 789
EciI GGCGGA 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 622
Eco31I GGTCTC 3 cut(s) 38, 223, 368
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 3 cut(s) 167, 405, 716
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 5 cut(s) 54, 345, 389, 680, 715
FaqI GGGAC 1 cut(s) 729
FatI CATG 5 cut(s) 50, 341, 385, 676, 711
FauI CCCGC 1 cut(s) 608
FauNDI CATATG 2 cut(s) 307, 813
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 2 cut(s) 523, 700
Fnu4HI GCNGC 3 cut(s) 195, 634, 668
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 3 cut(s) 195, 634, 668
FspBI CTAG 2 cut(s) 654, 663
GluI GCNGC 3 cut(s) 195, 634, 668
GsaI CCCAGC 1 cut(s) 697
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 4 cut(s) 72, 136, 466, 791
HapII CCGG 6 cut(s) 10, 133, 165, 244, 431, 462
Hin1II CATG 5 cut(s) 54, 345, 389, 680, 715
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HinfI GANTC 2 cut(s) 357, 415
HpaII CCGG 6 cut(s) 10, 133, 165, 244, 431, 462
Hpy166II GTNNAC 2 cut(s) 524, 701
Hpy188I TCNGA 2 cut(s) 58, 808
Hpy188III TCNNGA 4 cut(s) 188, 371, 408, 581
Hpy8I GTNNAC 2 cut(s) 524, 701
HpyAV CCTTC 3 cut(s) 396, 429, 731
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 447, 541
HpyCH4V TGCA 7 cut(s) 17, 140, 341, 345, 385, 731, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 351
HpyF3I CTNAG 3 cut(s) 198, 457, 560
HpySE526I ACGT 2 cut(s) 447, 541
Hsp92II CATG 5 cut(s) 54, 345, 389, 680, 715
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 124, 367, 484, 563, 595, 672
LmnI GCTCC 1 cut(s) 777
Lsp1109I GCAGC 3 cut(s) 181, 620, 654
LweI GCATC 2 cut(s) 181, 670
MaeI CTAG 2 cut(s) 654, 663
MaeII ACGT 2 cut(s) 447, 541
MaeIII GTNAC 1 cut(s) 434
MalI GATC 6 cut(s) 126, 369, 486, 565, 597, 674
MboI GATC 6 cut(s) 124, 367, 484, 563, 595, 672
MflI RGATCY 2 cut(s) 124, 484
MhlI GDGCHC 2 cut(s) 121, 622
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 4 cut(s) 83, 195, 438, 716
Mox20I TGGCCA 1 cut(s) 791
MscI TGGCCA 1 cut(s) 791
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 112, 710
Msp20I TGGCCA 1 cut(s) 791
MspI CCGG 6 cut(s) 10, 133, 165, 244, 431, 462
MspR9I CCNGG 6 cut(s) 11, 133, 165, 432, 463, 720
MssI GTTTAAAC 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 2 cut(s) 347, 351
NciI CCSGG 5 cut(s) 11, 133, 165, 432, 463
NdeI CATATG 2 cut(s) 307, 813
NdeII GATC 6 cut(s) 124, 367, 484, 563, 595, 672
NlaIII CATG 5 cut(s) 54, 345, 389, 680, 715
NlaIV GGNNCC 1 cut(s) 717
NspI RCATGY 2 cut(s) 345, 389
NspV TTCGAA 1 cut(s) 827
PaeI GCATGC 1 cut(s) 345
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 3 cut(s) 196, 635, 669
PleI GAGTC 1 cut(s) 351
PmeI GTTTAAAC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 351
Ppu21I YACGTR 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 716
PsiI TTATAA 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 718
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 4 cut(s) 167, 405, 464, 716
PspPPI RGGWCCY 1 cut(s) 716
PsuI RGATCY 2 cut(s) 124, 484
RseI CAYNNNNRTG 2 cut(s) 112, 710
Rsr2I CGGWCCG 1 cut(s) 167
RsrII CGGWCCG 1 cut(s) 167
SalI GTCGAC 1 cut(s) 699
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 195, 634, 668
Sau3AI GATC 6 cut(s) 124, 367, 484, 563, 595, 672
Sau96I GGNCC 4 cut(s) 167, 405, 464, 716
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 6 cut(s) 11, 133, 165, 432, 463, 720
SduI GDGCHC 2 cut(s) 121, 622
SfaNI GCATC 2 cut(s) 181, 670
SfcI CTRYAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 3 cut(s) 167, 405, 716
SmiMI CAYNNNNRTG 2 cut(s) 112, 710
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SpeI ACTAGT 1 cut(s) 653
SphI GCATGC 1 cut(s) 345
Sse9I AATT 1 cut(s) 84
SsiI CCGC 3 cut(s) 103, 128, 615
SspMI CTAG 2 cut(s) 654, 663
StyD4I CCNGG 6 cut(s) 9, 131, 163, 430, 461, 718
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 450, 544
TaqI TCGA 6 cut(s) 75, 99, 153, 573, 700, 827
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 219, 400, 792
TseI GCWGC 3 cut(s) 194, 633, 667
TspDTI ATGAA 6 cut(s) 85, 191, 324, 700, 739, 830
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 3 cut(s) 219, 400, 792
VpaK11BI GGWCC 3 cut(s) 167, 405, 716
XceI RCATGY 2 cut(s) 345, 389
XmiI GTMKAC 2 cut(s) 523, 700
XspI CTAG 2 cut(s) 654, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.