Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

72879712 .. 72881304

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGGCTCAGCAACATTTTGTTTGTAGGTTTTTTTTGTTGTACTGGTACAGACATGTTCTCAGTTGCCTCTACAATCTTAGGACCGGCCCTGCTTGGGATAACTAGCTGGTTTACGCTGCCCCTCAATGATGCTGATTTTGGGTGGGGGCGACCAAGTTTCATGGGACGTGCTGGAGCTCCAAGTGAAGGGAAGGCATACACGATACCAAGTGCAACTAATGATGATTTATCGCTGTACATTAATCTGCATTCTCGACATATGAACACATTTACGAAGTTGGTTTATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

98

Amino Acids

10.65

Weight (kDa)

5.36

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 94	2e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	43, 49, 239
AfiI	CCNNNNNNNGG	2 cut(s)	96, 188
AflIII	ACRYGT	1 cut(s)	54
AjiI	CACGTC	1 cut(s)	170
AluBI	AGCT	2 cut(s)	108, 179
AluI	AGCT	2 cut(s)	108, 179
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	83, 88
AvaII	GGWCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	9, 181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	83, 88
BmsI	GCATC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 188
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	96, 188
BseMII	CTCAG	2 cut(s)	22, 75
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	96, 188
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	9, 181
Bsp1407I	TGTACA	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	21, 74
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	8, 61, 79
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	83, 88
Csp6I	GTAC	3 cut(s)	42, 48, 238
CviAII	CATG	2 cut(s)	55, 163
CviJI	RGCY	4 cut(s)	7, 89, 108, 179
CviKI_1	RGCY	4 cut(s)	7, 89, 108, 179
CviQI	GTAC	3 cut(s)	42, 48, 238
DdeI	CTNAG	3 cut(s)	8, 61, 79
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	2 cut(s)	9, 181
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoT38I	GRGCYC	2 cut(s)	9, 181
FaeI	CATG	2 cut(s)	58, 166
FaiI	YATR	8 cut(s)	56, 164, 199, 261, 263, 288, 293, 295
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	54, 162
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	9, 181
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	58, 166
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	182, 187
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	215, 250
HpyF3I	CTNAG	3 cut(s)	8, 61, 79
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	58, 166
LmnI	GCTCC	2 cut(s)	176, 184
LpnPI	CCDG	5 cut(s)	30, 94, 99, 104, 159
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	9, 181
MnlI	CCTC	2 cut(s)	79, 134
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	250
NdeI	CATATG	1 cut(s)	261
NlaIII	CATG	2 cut(s)	58, 166
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	120
PscI	ACATGT	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	83, 88
RsaI	GTAC	3 cut(s)	43, 49, 239
RsaNI	GTAC	3 cut(s)	42, 48, 238
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	119
Sau96I	GGNCC	2 cut(s)	83, 88
SduI	GDGCHC	2 cut(s)	9, 181
SetI	ASST	4 cut(s)	31, 110, 172, 181
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	181
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	256
TatI	WGTACW	2 cut(s)	41, 237
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	151, 278
VpaK11BI	GGWCC	1 cut(s)	83
VspI	ATTAAT	1 cut(s)	243
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.