Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

50717590 .. 50729114

Gene Structure 11525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCGATCAACGTGAGAGTGCGGGAGTCAAGGGTGGTGAGGCCATCAGAGGAGACACCTCGGCATGCACTATGGATTTCCAACTTGGACGTGGTGATATCCAACACTCACATGGGCAGCGTGTACTTCTACCGGAGGCAAACCGGTGTCCTTGATGATAACTTCTTCGAGCCGCGCGTGCTAAATTATCCCCTCTTGGTCTTACAGGTTACATACTTCAAATGTGGTGGAGTGTCACTTGGTGTTGGCATGGAACACCGGGTAGCAGATGGATATTCTGGTCTCCATTTCATAAATACATGGTCTGATATCGCTCGTGGCCTCGACCTCACAATTCCACCATTCATCGACCGCACATTACTACGTGCTCGAGATCCGCCCCGGCCTGCATTCCCCCACATCGAATACCAACCCGGTCGGTCTATGAAAACTCCTCTTGATGCTGCTCAGATGACATCAACAATGGTCTCCATTTTCAAGCTGACACCAGACCAGCTCAACACCTTGAAAGCCAAGTTTAAACAAGATGGGAACAACACGATCAAGTTCAGCTTATATGAAATGTTGGCAGGTCATATATGGCGATGTGCATGCAGGCACGCCGACTCCCCGATGATCAAGAGACCAAACTGCATATCGCCACTGATGGAAGGTCCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

9.11

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	60 - 204	1.4e-32	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	560
AccII	CGCG	2 cut(s)	175, 177
AciI	CCGC	4 cut(s)	22, 173, 352, 377
AclWI	GGATC	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	220, 478, 508
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	3 cut(s)	481, 496, 552
AluI	AGCT	3 cut(s)	481, 496, 552
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	4 cut(s)	47, 287, 472, 616
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	41, 319, 383
ApeKI	GCWGC	2 cut(s)	117, 443
AsiGI	ACCGGT	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	3 cut(s)	260, 382, 414
AsuHPI	GGTGA	2 cut(s)	49, 106
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	129, 430
BccI	CCATC	4 cut(s)	52, 263, 521, 640
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	3 cut(s)	260, 382, 414
BcoDI	GTCTC	4 cut(s)	47, 287, 472, 616
BfuAI	ACCTGC	1 cut(s)	560
BisI	GCNGC	3 cut(s)	118, 173, 444
BlsI	GCNGC	3 cut(s)	119, 174, 445
Bme1390I	CCNGG	3 cut(s)	260, 382, 414
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	3 cut(s)	260, 382, 414
BmsI	GCATC	1 cut(s)	430
BpuMI	CCSGG	3 cut(s)	260, 382, 414
BsaAI	YACGTR	1 cut(s)	365
BsaI	GGTCTC	3 cut(s)	287, 472, 616
BsaJI	CCNNGG	2 cut(s)	59, 380
BsaWI	WCCGGW	2 cut(s)	132, 143
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bse118I	RCCGGY	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	59, 380
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	65, 423
BseXI	GCAGC	2 cut(s)	129, 430
Bsh1236I	CGCG	2 cut(s)	175, 177
Bsh1285I	CGRYCG	2 cut(s)	352, 418
BshFI	GGCC	3 cut(s)	43, 321, 385
BshTI	ACCGGT	1 cut(s)	143
BsiEI	CGRYCG	2 cut(s)	352, 418
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	5 cut(s)	133, 144, 259, 382, 414
BsmAI	GTCTC	4 cut(s)	47, 287, 472, 616
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	43, 321, 385
Bso31I	GGTCTC	3 cut(s)	287, 472, 616
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	6, 373, 540, 615
BspACI	CCGC	4 cut(s)	22, 173, 352, 377
BspANI	GGCC	3 cut(s)	43, 321, 385
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	175, 177
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	3 cut(s)	287, 472, 616
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	59, 380
BssMI	GATC	4 cut(s)	6, 373, 540, 615
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	6 cut(s)	66, 179, 387, 592, 596, 600
BstDEI	CTNAG	1 cut(s)	447
BstFNI	CGCG	2 cut(s)	175, 177
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	4 cut(s)	9, 376, 543, 618
BstMAI	GTCTC	4 cut(s)	47, 287, 472, 616
BstMBI	GATC	4 cut(s)	6, 373, 540, 615
BstMCI	CGRYCG	2 cut(s)	352, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	2 cut(s)	68, 594
BstSCI	CCNGG	3 cut(s)	258, 380, 412
BstUI	CGCG	2 cut(s)	175, 177
BstV1I	GCAGC	2 cut(s)	129, 430
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	43, 321, 385
BtgZI	GCGATG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	6 cut(s)	66, 179, 387, 592, 596, 600
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	124
CspAI	ACCGGT	1 cut(s)	143
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	5 cut(s)	65, 112, 250, 300, 591
CviJI	RGCY	8 cut(s)	43, 172, 321, 385, 481, 496, 512, 552
CviKI_1	RGCY	8 cut(s)	43, 172, 321, 385, 481, 496, 512, 552
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	4 cut(s)	8, 375, 542, 617
DpnII	GATC	4 cut(s)	6, 373, 540, 615
DraI	TTTAAA	1 cut(s)	520
DraIII	CACNNNGTG	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	366
Eco31I	GGTCTC	3 cut(s)	287, 472, 616
Eco32I	GATATC	2 cut(s)	99, 310
Eco47I	GGWCC	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	369
EcoRV	GATATC	2 cut(s)	99, 310
FaeI	CATG	5 cut(s)	68, 115, 253, 303, 594
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	5 cut(s)	64, 111, 249, 299, 590
FauI	CCCGC	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	118, 173, 444
Fsp4HI	GCNGC	3 cut(s)	118, 173, 444
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	118, 173, 444
HaeIII	GGCC	3 cut(s)	43, 321, 385
HapII	CCGG	5 cut(s)	133, 144, 259, 382, 414
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	68, 115, 253, 303, 594
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	26, 605
HpaII	CCGG	5 cut(s)	133, 144, 259, 382, 414
HphI	GGTGA	2 cut(s)	49, 106
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	49, 307, 450
Hpy188III	TCNNGA	4 cut(s)	371, 437, 619, 656
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	644
HpyCH4IV	ACGT	3 cut(s)	12, 90, 364
HpyCH4V	TGCA	5 cut(s)	68, 389, 590, 594, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	3 cut(s)	12, 90, 364
Hsp92II	CATG	5 cut(s)	68, 115, 253, 303, 594
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	6, 373, 540, 615
Lsp1109I	GCAGC	2 cut(s)	129, 430
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	3 cut(s)	12, 90, 364
MaeIII	GTNAC	2 cut(s)	208, 234
MalI	GATC	4 cut(s)	8, 375, 542, 617
MboI	GATC	4 cut(s)	6, 373, 540, 615
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	2 cut(s)	184, 333
MlyI	GAGTC	2 cut(s)	35, 599
MmeI	TCCRAC	2 cut(s)	105, 126
MnlI	CCTC	8 cut(s)	33, 43, 69, 129, 203, 332, 338, 444
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	5 cut(s)	133, 144, 259, 382, 414
MspR9I	CCNGG	3 cut(s)	260, 382, 414
MssI	GTTTAAAC	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	389
MvnI	CGCG	2 cut(s)	175, 177
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	3 cut(s)	260, 382, 414
NdeII	GATC	4 cut(s)	6, 373, 540, 615
NlaIII	CATG	5 cut(s)	68, 115, 253, 303, 594
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	2 cut(s)	68, 594
PaeI	GCATGC	2 cut(s)	68, 594
PaeR7I	CTCGAG	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	119, 174, 445
PleI	GAGTC	2 cut(s)	34, 599
PmeI	GTTTAAAC	1 cut(s)	520
PpsI	GAGTC	2 cut(s)	34, 599
Ppu21I	YACGTR	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	3 cut(s)	118, 173, 444
Sau3AI	GATC	4 cut(s)	6, 373, 540, 615
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	2 cut(s)	35, 599
ScrFI	CCNGG	3 cut(s)	260, 382, 414
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	430
Sfr274I	CTCGAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
SphI	GCATGC	2 cut(s)	68, 594
Sse9I	AATT	2 cut(s)	184, 333
SsiI	CCGC	4 cut(s)	22, 173, 352, 377
StyD4I	CCNGG	3 cut(s)	258, 380, 412
TaiI	ACGT	3 cut(s)	15, 93, 367
TaqI	TCGA	6 cut(s)	5, 168, 324, 348, 370, 402
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	184, 333
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	2 cut(s)	117, 443
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	4 cut(s)	280, 334, 440, 573
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	2 cut(s)	68, 594
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 109
XhoI	CTCGAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.