RLG00000035874

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
72981119 .. 72981521
403 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035874

Sequence Viewer

Length: 312 bp
ATGACCATAGTAGATGACGATGATATGACCACTTTATCAGTCAAGTTTACCACATTTGAGGTGTTTGCTGGTCACGTATGGAGATGTGCCTGCAAAGCACATGAACTAGCTAATGTTCCTACAAGAGCCATAGCAATAGCCTTAGTGGGGGATCTCATATCAAAACCATTATCGTATGCCGCAAGTTGCATTGACAATATTGTGGTGCATATGGAGGATGATTATGTTCGGTCGGAACTTGACTATCTTATACTTCAACAGTGTCATCAAGATCTGTCAAGCCTTGATCATGGGACTCATCACTCATGTTAG

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

4.88

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AlwI GGATC 1 cut(s) 159
BclI TGATCA 1 cut(s) 286
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 307
Bsp143I GATC 3 cut(s) 151, 271, 286
BspACI CCGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 159
BssMI GATC 3 cut(s) 151, 271, 286
Bst4CI ACNGT 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 3 cut(s) 154, 274, 289
BstMBI GATC 3 cut(s) 151, 271, 286
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 151, 271
BstYI RGATCY 2 cut(s) 151, 271
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 91
CviAII CATG 3 cut(s) 101, 290, 306
CviJI RGCY 4 cut(s) 110, 128, 140, 282
CviKI_1 RGCY 4 cut(s) 110, 128, 140, 282
DdeI CTNAG 1 cut(s) 142
DpnI GATC 3 cut(s) 153, 273, 288
DpnII GATC 3 cut(s) 151, 271, 286
FaeI CATG 3 cut(s) 104, 293, 309
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 100, 289, 305
FauNDI CATATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 104, 293, 309
HinfI GANTC 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 93, 189, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 104, 293, 309
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 151, 271, 286
LpnPI CCDG 2 cut(s) 54, 103
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 153, 273, 288
MboI GATC 3 cut(s) 151, 271, 286
MflI RGATCY 2 cut(s) 151, 271
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 52, 208
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeI CATATG 1 cut(s) 210
NdeII GATC 3 cut(s) 151, 271, 286
NlaIII CATG 3 cut(s) 104, 293, 309
NmuCI GTSAC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 76
PsuI RGATCY 2 cut(s) 151, 271
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 151, 271, 286
SchI GAGTC 1 cut(s) 289
SetI ASST 3 cut(s) 63, 78, 112
SsiI CCGC 1 cut(s) 180
SspI AATATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 78
TaqII GACCGA 1 cut(s) 219
TauI GCSGC 1 cut(s) 182
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 266
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.