Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

2744372 .. 2745937

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCAATGTTTCCAAATATATATGCATCGTGGCAGAAAGCATTGCCTTATATAGGAGGATCGATAGACACATTATATGGTATAGACAATCAGATAGTCAAATTTCAAGATCGGAAGCGTGAGAGAGTCGACGGTGGTGAAGCCAGCGGTGGAAACACCTCGGCAGTCGCTTTGGATGTCCAACTTGGACATGATCAGTTCAAATGCTCATACTCCCACTTAGACAAGCCAAAAGATGGCGCAGACAGCTTCTTTGACCCGCGCGTGCTGAAGGACGCGCTCAGCAAGGCCCTCGTGTCCTTCTACCCCTTGGCCGGCCGTCTGAGGCAAAACAACGAGGACAAGAATGCTCGTATTGAAATCAATTGCAATGCTGAGGGAGTCTTGTTTGTTGTGGCAGATAGCAGCTCCTGCGCCGATGATTTTGCCCATTTTAAGACCACTCTCGAGTTAGGGAGATCGCTCATCCCTGCGGTTGATTACTCCGCGGGGATATCTTCTTTTCCACTCTTCGTGGTTCAGGTCACATACCTAAAATGCGGTGGAGTTGCACTTGGTATTGGCTTTGAACACAGCGCAGCGGATGGGTTTGCTGCTCTCCACTTTGTAAAAGCATGGTCTGATATGGCTCGTGGTGCCGACTTGGCAATCCCACCAACCCTCGACAGGACATTACTTCGAGCCCGAGACCCGCCTCAGCCTCTCCTCGACCACAACCACCATGTCGAATACCATCCTCCTCCATCGGTCACAAAAGCAGCCGCCGCTTCTGATCCCGATCATGAGACGGCTACAGTCTCCGTTTTTAAGTTCACGAGGGAGCAGATCAACATCTTGAAAGCTAAGTCGTTAACAACCAAGAAAGATGACGATGTTGATAACGGGAACTCCTTCGTGAAGTACACTTCGTATGAGGTCTTTGCAGCTCATGTATGGAGATCTGCATGCAAGGCACGTGAACTTGCTGATGATCAAGAGACACAATTCCACATTGCCGCAAATGGACGGGGCCTCATATCGAAACCGATGAGCTACGCTGCGAGCTGCATTCACAAGGCTTTGGTGCGTATGGACGATGAGTATCTCCGATCAGCCCTCGACTATCTTGAGCTTCAGCAGTCTCATCATCATCTGTCGAGCCTTGCTCGCGGAGCTCATTACTATAAGAGCCCTAATCTTGGGATAACTAGCTGGGTTACGTTGCCGATATATGACGCTGATTTTGGTTGGGGTCGGCCAGTTTTCATGGGACGCGGTGGACTTTCACATGAAGGGAAGGCTTACATGGTACCAAGTGCAAGTGATGATGGGAGTTTCTCACTGGGAATTTCTCTGCAATCTCGGCATATGAAATCATTTTCTAAGTTGATTTATGACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

460

Amino Acids

50.65

Weight (kDa)

6.34

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	87 - 341	7.3e-54	Transferase family
Transferase	PF02458	338 - 455	1.2e-19	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1288
AccB1I	GGYRCC	2 cut(s)	635, 1288
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
AclWI	GGATC	2 cut(s)	67, 767
AcoI	YGGCCR	3 cut(s)	312, 316, 1235
AcsI	RAATTY	2 cut(s)	101, 1326
AcuI	CTGAAG	2 cut(s)	290, 1097
AcvI	CACGTG	1 cut(s)	956
AfaI	GTAC	2 cut(s)	902, 1290
AfiI	CCNNNNNNNGG	5 cut(s)	53, 236, 314, 666, 1178
AgsI	TTSAA	5 cut(s)	107, 202, 359, 569, 838
AluBI	AGCT	9 cut(s)	249, 408, 842, 926, 1032, 1044, 1111, 1154, 1191
AluI	AGCT	9 cut(s)	249, 408, 842, 926, 1032, 1044, 1111, 1154, 1191
Alw21I	GWGCWC	1 cut(s)	1156
Alw26I	GTCTC	5 cut(s)	681, 779, 802, 971, 1125
AlwI	GGATC	2 cut(s)	67, 767
AlwNI	CAGNNNCTG	1 cut(s)	411
Ama87I	CYCGRG	2 cut(s)	446, 684
AoxI	GGCC	5 cut(s)	288, 312, 316, 1009, 1235
ApeKI	GCWGC	7 cut(s)	405, 578, 593, 758, 923, 1037, 1044
ApoI	RAATTY	2 cut(s)	101, 1326
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1205, 1237
Asp700I	GAANNNNTTC	1 cut(s)	890
Asp718I	GGTACC	1 cut(s)	1288
AspLEI	GCGC	5 cut(s)	242, 264, 280, 416, 578
AspS9I	GGNCC	2 cut(s)	289, 1009
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	446, 684
BanI	GGYRCC	2 cut(s)	635, 1288
BanII	GRGCYC	3 cut(s)	685, 1156, 1172
BauI	CACGAG	3 cut(s)	293, 630, 814
BbrPI	CACGTG	1 cut(s)	956
Bbv12I	GWGCWC	1 cut(s)	1156
BbvCI	CCTCAGC	2 cut(s)	375, 696
BbvI	GCAGC	7 cut(s)	417, 580, 590, 770, 935, 1024, 1031
BccI	CCATC	5 cut(s)	230, 578, 741, 751, 1301
BceAI	ACGGC	2 cut(s)	303, 804
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 407, 441
BclI	TGATCA	2 cut(s)	193, 970
BcoDI	GTCTC	5 cut(s)	681, 779, 802, 971, 1125
BfaI	CTAG	1 cut(s)	1188
BfmI	CTRYAG	1 cut(s)	792
BglI	GCCNNNNNGGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	938
BlpI	GCTNAGC	1 cut(s)	281
BmeT110I	CYCGRG	2 cut(s)	446, 684
BmgT120I	GGNCC	2 cut(s)	289, 1009
BmiI	GGNNCC	3 cut(s)	637, 1010, 1290
BmrI	ACTGGG	1 cut(s)	1331
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	1331
BplI	GAGNNNNNCTC	2 cut(s)	1129, 1161
Bpu10I	CCTNAGC	2 cut(s)	375, 696
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	1127
Bsa29I	ATCGAT	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	956
BsaBI	GATNNNNATC	3 cut(s)	777, 830, 1080
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	3 cut(s)	159, 309, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 236, 314, 666, 1178
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	1238, 1326
Bse3DI	GCAATG	4 cut(s)	12, 41, 376, 990
Bse8I	GATNNNNATC	3 cut(s)	777, 830, 1080
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	159, 309, 486
BseGI	GGATG	4 cut(s)	181, 465, 589, 733
BseJI	GATNNNNATC	3 cut(s)	777, 830, 1080
BseLI	CCNNNNNNNGG	5 cut(s)	53, 236, 314, 666, 1178
BseMI	GCAATG	4 cut(s)	12, 41, 376, 990
BseMII	CTCAG	4 cut(s)	295, 314, 366, 710
BseNI	ACTGG	2 cut(s)	1238, 1326
BseRI	GAGGAG	2 cut(s)	695, 729
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	7 cut(s)	417, 580, 590, 770, 935, 1024, 1031
BseYI	CCCAGC	1 cut(s)	1191
Bsh1236I	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	5 cut(s)	290, 314, 318, 1011, 1237
BshNI	GGYRCC	2 cut(s)	635, 1288
BshVI	ATCGAT	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	1156
BsiHKCI	CYCGRG	2 cut(s)	446, 684
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	1263
BslI	CCNNNNNNNGG	5 cut(s)	53, 236, 314, 666, 1178
BsmAI	GTCTC	5 cut(s)	681, 779, 802, 971, 1125
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	1263
BsmI	GAATGC	2 cut(s)	352, 1047
BsnI	GGCC	5 cut(s)	290, 314, 318, 1011, 1237
Bso31I	GGTCTC	1 cut(s)	681
BsoBI	CYCGRG	2 cut(s)	446, 684
Bsp1286I	GDGCHC	3 cut(s)	685, 1156, 1172
Bsp1720I	GCTNAGC	1 cut(s)	281
BspANI	GGCC	5 cut(s)	290, 314, 318, 1011, 1237
BspCNI	CTCAG	4 cut(s)	294, 315, 367, 709
BspDI	ATCGAT	1 cut(s)	62
BspFNI	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	3 cut(s)	637, 1010, 1290
BspPI	GGATC	2 cut(s)	67, 767
BspT107I	GGYRCC	2 cut(s)	635, 1288
BspTNI	GGTCTC	1 cut(s)	681
BsrDI	GCAATG	4 cut(s)	12, 41, 376, 990
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	1238, 1326
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	159, 309, 486
BssSI	CACGAG	3 cut(s)	293, 630, 814
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	3 cut(s)	293, 630, 814
Bst4CI	ACNGT	2 cut(s)	134, 796
Bst6I	CTCTTC	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	956
BstC8I	GCNNGC	6 cut(s)	145, 266, 316, 946, 1042, 1147
BstDEI	CTNAG	7 cut(s)	220, 281, 323, 375, 696, 843, 1362
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	181, 465, 589, 733
BstFNI	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
BstHHI	GCGC	5 cut(s)	242, 264, 280, 416, 578
BstMAI	GTCTC	5 cut(s)	681, 779, 802, 971, 1125
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	9 cut(s)	246, 411, 635, 644, 764, 950, 1146, 1151, 1342
BstNSI	RCATGY	1 cut(s)	948
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
BstV1I	GCAGC	7 cut(s)	417, 580, 590, 770, 935, 1024, 1031
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BstZI	CGGCCG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	5 cut(s)	290, 314, 318, 1011, 1237
BsuTUI	ATCGAT	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	181, 465, 589, 733
BtsIMutI	CAGTG	1 cut(s)	1319
Cac8I	GCNNGC	6 cut(s)	145, 266, 316, 946, 1042, 1147
CaiI	CAGNNNCTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	5 cut(s)	242, 264, 280, 416, 578
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	289, 1009
Cfr42I	CCGCGG	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	3 cut(s)	284, 1223, 1260
Csp6I	GTAC	2 cut(s)	901, 1289
CviAII	CATG	9 cut(s)	191, 615, 722, 782, 929, 945, 1246, 1268, 1285
CviQI	GTAC	2 cut(s)	901, 1289
DdeI	CTNAG	7 cut(s)	220, 281, 323, 375, 696, 843, 1362
EaeI	YGGCCR	3 cut(s)	312, 316, 1235
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	1154
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	3 cut(s)	685, 1156, 1172
Eco31I	GGTCTC	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	495
Eco52I	CGGCCG	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	1154
Eco57I	CTGAAG	2 cut(s)	290, 1097
Eco72I	CACGTG	1 cut(s)	956
Eco88I	CYCGRG	2 cut(s)	446, 684
EcoICRI	GAGCTC	1 cut(s)	1154
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	289, 1009
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	3 cut(s)	685, 1156, 1172
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	9 cut(s)	194, 618, 725, 785, 932, 948, 1249, 1271, 1288
FaqI	GGGAC	1 cut(s)	1263
FatI	CATG	9 cut(s)	190, 614, 721, 781, 928, 944, 1245, 1267, 1284
FauI	CCCGC	3 cut(s)	267, 481, 699
FauNDI	CATATG	1 cut(s)	1347
FbaI	TGATCA	2 cut(s)	193, 970
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	4 cut(s)	188, 452, 596, 720
FriOI	GRGCYC	3 cut(s)	685, 1156, 1172
FseI	GGCCGGCC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	1188
GlaI	GCGC	5 cut(s)	241, 263, 279, 415, 577
GsaI	CCCAGC	1 cut(s)	1195
HaeIII	GGCC	5 cut(s)	290, 314, 318, 1011, 1237
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	3 cut(s)	284, 1223, 1260
HhaI	GCGC	5 cut(s)	242, 264, 280, 416, 578
Hin1II	CATG	9 cut(s)	194, 618, 725, 785, 932, 948, 1249, 1271, 1288
Hin6I	GCGC	5 cut(s)	240, 262, 278, 414, 576
HinP1I	GCGC	5 cut(s)	240, 262, 278, 414, 576
HincII	GTYRAC	2 cut(s)	130, 852
HindII	GTYRAC	2 cut(s)	130, 852
HinfI	GANTC	2 cut(s)	126, 381
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	6 cut(s)	130, 813, 852, 903, 959, 1259
Hpy188I	TCNGA	7 cut(s)	93, 114, 324, 622, 772, 1088, 1382
Hpy188III	TCNNGA	9 cut(s)	107, 446, 776, 782, 814, 835, 895, 974, 1106
Hpy8I	GTNNAC	6 cut(s)	130, 813, 852, 903, 959, 1259
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	265, 310, 901, 1265, 1270
HpyCH4III	ACNGT	2 cut(s)	134, 796
HpyCH4IV	ACGT	2 cut(s)	955, 1199
HpyCH4V	TGCA	9 cut(s)	26, 369, 551, 923, 944, 948, 1047, 1298, 1336
HpyF10VI	GCNNNNNNNGC	9 cut(s)	246, 411, 635, 644, 764, 950, 1146, 1151, 1342
HpyF3I	CTNAG	7 cut(s)	220, 281, 323, 375, 696, 843, 1362
HpySE526I	ACGT	2 cut(s)	955, 1199
Hsp92II	CATG	9 cut(s)	194, 618, 725, 785, 932, 948, 1249, 1271, 1288
HspAI	GCGC	5 cut(s)	240, 262, 278, 414, 576
KpnI	GGTACC	1 cut(s)	1292
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	193, 970
KspAI	GTTAAC	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	489
LmnI	GCTCC	3 cut(s)	413, 820, 1151
LpnPI	CCDG	9 cut(s)	157, 328, 424, 483, 506, 652, 1177, 1251, 1307
Lsp1109I	GCAGC	7 cut(s)	417, 580, 590, 770, 935, 1024, 1031
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	1188
MaeII	ACGT	2 cut(s)	955, 1199
MaeIII	GTNAC	3 cut(s)	523, 748, 1195
MboII	GAAGA	2 cut(s)	489, 502
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	3 cut(s)	685, 1156, 1172
MluCI	AATT	4 cut(s)	101, 364, 983, 1326
MlyI	GAGTC	2 cut(s)	135, 390
MmeI	TCCRAC	1 cut(s)	205
Mph1103I	ATGCAT	1 cut(s)	28
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	3 cut(s)	435, 807, 851
MspA1I	CMGCKG	3 cut(s)	147, 488, 581
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	364
Mva1269I	GAATGC	2 cut(s)	352, 1047
MvnI	CGCG	6 cut(s)	262, 264, 278, 488, 1149, 1254
MwoI	GCNNNNNNNGC	9 cut(s)	246, 411, 635, 644, 764, 950, 1146, 1151, 1342
NaeI	GCCGGC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	1347
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	9 cut(s)	194, 618, 725, 785, 932, 948, 1249, 1271, 1288
NlaIV	GGNNCC	3 cut(s)	637, 1010, 1290
NmeAIII	GCCGAG	2 cut(s)	140, 1321
NmuCI	GTSAC	2 cut(s)	523, 748
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	948
PaeI	GCATGC	1 cut(s)	948
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	2 cut(s)	352, 1047
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	890
PflMI	CCANNNNNTGG	1 cut(s)	236
PleI	GAGTC	2 cut(s)	134, 389
PmaCI	CACGTG	1 cut(s)	956
PmlI	CACGTG	1 cut(s)	956
PpsI	GAGTC	2 cut(s)	134, 389
Ppu21I	YACGTR	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	1156
PspCI	CACGTG	1 cut(s)	956
PspFI	CCCAGC	1 cut(s)	1191
PspN4I	GGNNCC	3 cut(s)	637, 1010, 1290
PspPI	GGNCC	2 cut(s)	289, 1009
PstNI	CAGNNNCTG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	938
RigI	GGCCGGCC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	902, 1290
RsaNI	GTAC	2 cut(s)	901, 1289
SacI	GAGCTC	1 cut(s)	1156
SacII	CCGCGG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	435, 807, 851
Sau96I	GGNCC	2 cut(s)	289, 1009
SchI	GAGTC	2 cut(s)	135, 390
SduI	GDGCHC	3 cut(s)	685, 1156, 1172
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	792
Sfr274I	CTCGAG	1 cut(s)	446
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	446, 1106
SmoI	CTYRAG	2 cut(s)	446, 1106
SphI	GCATGC	1 cut(s)	948
Sse9I	AATT	4 cut(s)	101, 364, 983, 1326
SspMI	CTAG	1 cut(s)	1188
SstI	GAGCTC	1 cut(s)	1156
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	134, 796
TaiI	ACGT	2 cut(s)	958, 1202
TaqII	GACCGA	1 cut(s)	736
TasI	AATT	4 cut(s)	101, 364, 983, 1326
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	3 cut(s)	764, 767, 998
Tru1I	TTAA	3 cut(s)	435, 807, 851
Tru9I	TTAA	3 cut(s)	435, 807, 851
TscAI	CASTG	1 cut(s)	1326
TseFI	GTSAC	2 cut(s)	523, 748
TseI	GCWGC	7 cut(s)	405, 578, 593, 758, 923, 1037, 1044
Tsp45I	GTSAC	2 cut(s)	523, 748
TspDTI	ATGAA	3 cut(s)	1234, 1284, 1364
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	1 cut(s)	1326
Van91I	CCANNNNNTGG	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	2 cut(s)	101, 1326
XceI	RCATGY	1 cut(s)	948
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	1188
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.