Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

34497465 .. 34504354

Gene Structure 6890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGCAGAGAGCTCTCACTGTGAAGCGCTCGCTCCAATCCCTCCACAGAATCGCCAATTCCACCACTAAAAACCCATTAAGCTCAGGGCGTGCATTTTGCAATGCACCGTCACCGTCGCCGTCCTCCGCATCAGCATCAGCATCTGAGGTCCGCAAGTACATGGGGTACACAGCCCTGGTCTTATTCTGCGGTGCCGCCACCTACTACTCCTTCCCATTTCCGGAGAACGCCAAGCACAAGAAGGCCCAAATCTTCCGCTACGCCCCTCTACCTGAGGAGCTCCACACGGTCTCAAACTGGAGCGGGACCCACGAGGTCCAGACCCGGGTTTTCCACCAGCCCGAGACCCTTGAGGAGCTCGAGAAAGTAGTCAAGGAGGCCAATGAGAACAAGTACCGGATTCGGCCGGTCGGCTCTGGGTTGTCCCCCAATGGGATTGGATTGTCCAGGGCCGGGATGGTCAATTTGGCTCTCATGGATAAGGTTTTGGAGGTGGATAAGGAGAAGAAGAGAGTGAGAGTGCAAGCTGGGATCAGGGTCCAGCAATTGGTGGATGGGATTAAGGATCAGGGCCTTACTTTGCAGAACTTTGCCTCCATAAGGGAGCAACAGATTGGTGGCATTGTGCAGGTTGGTGCACATGGTACTGGTGCGAGGTTGCCTCCGATTGATGAGCAGGTGATCAGCATGAAATTGGTCACTCCTGCTAAGGGAACAATAGAGGTCTCCAAGGAGAAAGATCCAGAGCTGTTTTATTTAGCTCGCTGTGGCCTCGGCGGTCTGGGAGTTGTTGCTGAAGTTACCATCCAATGTGTTGACAGACAGGAGCTTGTAGAGCACACTACTGTTTCAAACATGGAAGAAATCAAGAAAAATCACAAGAAATTGCTCTCTGAGAACAAACATGTGAAGTATCTCTATATTCCATATACTGATACTGTTGTGGTTGTGACGTGCAACCCTGTCTCGAAATGGAAAGGTCCCCCAAAGTTCAAACCCAAATATACAACGGATGAAGCCATTCAGCACGTTCGTGATCTCTACAGGGAATGCCTCAAGAAGTACAGAGTAGTACCAGACAACAGTGTAGACATAAATGAGCTCTCTTTTACGGAGTTGAGAGATAAACTACTGGCCCTAAATCCTCTCAACAAAGATCATATCGTGAAAGTGAATCAAGCTGAGGCAGAGTTCTGGAGGAAGTCGGAGGGATACAGAGTAGGATGGAGTGATGAAATTCTGGGCTTTGATTGTGGTGGCCAACAGTGGGTTTCGGAGACTTGTTTTCCAGCTGGAACCCTTGCCAAACCAAGTATGAAAGACCTTGAATACATAGCAGATCTAAAACAGCTAATAGAGAAGGAAGAGATACCTGCACCTGCTCCAATAGAGCAGCGCTGGACAGCCAGCACTAAGAGCCCCATGAGTCCAGCTTCAAGCTCAAGAGAGGATGATATATTTTCATGGGTTGGCATAATCATGTACCTTCCAACAACAGATGCCCGCCAAAGAAAGGATATTAAGGAAGAGTTTTTCCACTACAGGCATCTAACCCAGACACGGTTGTGGGATACGTATTCTTCTTATGAACACTGGGCCAAGATTGAGGTCCCAAAGGACAAAGAACAGCTTACCGCTCTGCAGGCAAGGCTAAGGAAGCGTTTTCCAGTTGACGCCTACAACAAAGCACGAACGGAATTAGACCCAAACCGGATCCTTTCAAACATCAAGCTGGAAAAGCTTTTCCCATTGTCTGATACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

588

Amino Acids

66.63

Weight (kDa)

8.92

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	110 - 240	1.1e-28	FAD binding domain
ALO	PF04030	267 - 578	4.3e-19	D-arabinono-1,4-lactone oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	667, 1387
Acc36I	ACCTGC	4 cut(s)	619, 667, 1381, 1387
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	2 cut(s)	303, 1637
AccI	GTMKAC	1 cut(s)	1089
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	9 cut(s)	126, 151, 189, 195, 256, 303, 777, 1504, 1635
AclWI	GGATC	5 cut(s)	539, 573, 734, 1708, 1721
AcoI	YGGCCR	2 cut(s)	404, 1258
AcsI	RAATTY	1 cut(s)	1236
AcuI	CTGAAG	1 cut(s)	816
AcyI	GRCGYC	1 cut(s)	1674
AfaI	GTAC	7 cut(s)	158, 167, 395, 646, 1064, 1074, 1484
AfeI	AGCGCT	2 cut(s)	26, 1397
AflIII	ACRYGT	1 cut(s)	904
AgsI	TTSAA	5 cut(s)	852, 994, 1328, 1437, 1722
AjiI	CACGTC	1 cut(s)	954
AjnI	CCWGG	2 cut(s)	174, 446
AleI	CACNNNNGTG	2 cut(s)	1032, 1564
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
Alw21I	GWGCWC	6 cut(s)	13, 282, 360, 640, 840, 1104
Alw26I	GTCTC	5 cut(s)	295, 338, 730, 970, 1271
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	5 cut(s)	539, 573, 734, 1708, 1721
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	3 cut(s)	324, 341, 359
Aor13HI	TCCGGA	1 cut(s)	220
Aor51HI	AGCGCT	2 cut(s)	26, 1397
AoxI	GGCC	9 cut(s)	243, 378, 404, 450, 571, 769, 1134, 1258, 1596
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	1393
ApoI	RAATTY	1 cut(s)	1236
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	2 cut(s)	27, 1398
AsuC2I	CCSGG	3 cut(s)	325, 326, 454
AsuHPI	GGTGA	2 cut(s)	102, 691
AvaI	CYCGRG	3 cut(s)	324, 341, 359
AvaII	GGWCC	6 cut(s)	148, 306, 316, 538, 980, 1609
AxyI	CCTNAGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	927, 960
BalI	TGGCCA	1 cut(s)	1260
BamHI	GGATCC	1 cut(s)	1713
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	5 cut(s)	13, 282, 360, 1104, 1421
BauI	CACGAG	1 cut(s)	311
Bbv12I	GWGCWC	6 cut(s)	13, 282, 360, 640, 840, 1104
BbvCI	CCTCAGC	1 cut(s)	1182
BbvI	GCAGC	1 cut(s)	1405
BccI	CCATC	4 cut(s)	451, 548, 812, 1218
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	176, 448
BciVI	GTATCC	2 cut(s)	1205, 1564
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	3 cut(s)	325, 326, 454
BcoDI	GTCTC	5 cut(s)	295, 338, 730, 970, 1271
BfmI	CTRYAG	3 cut(s)	1042, 1540, 1640
BfoI	RGCGCY	2 cut(s)	28, 1399
BfuAI	ACCTGC	4 cut(s)	619, 667, 1381, 1387
BfuI	GTATCC	2 cut(s)	1205, 1564
BglII	AGATCT	1 cut(s)	1339
BisI	GCNGC	2 cut(s)	195, 1394
BlsI	GCNGC	2 cut(s)	196, 1395
Bme1390I	CCNGG	5 cut(s)	176, 325, 326, 448, 454
Bme18I	GGWCC	6 cut(s)	148, 306, 316, 538, 980, 1609
BmeT110I	CYCGRG	3 cut(s)	324, 341, 359
BmgBI	CACGTC	1 cut(s)	954
BmiI	GGNNCC	8 cut(s)	193, 307, 308, 539, 982, 1297, 1611, 1715
BmrFI	CCNGG	5 cut(s)	176, 325, 326, 448, 454
BmrI	ACTGGG	1 cut(s)	1603
BmsI	GCATC	5 cut(s)	137, 143, 149, 1489, 1555
BmuI	ACTGGG	1 cut(s)	1603
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpmI	CTGGAG	2 cut(s)	319, 1216
Bpu10I	CCTNAGC	4 cut(s)	82, 708, 1182, 1652
BpuEI	CTTGAG	3 cut(s)	371, 1040, 1426
BpuMI	CCSGG	3 cut(s)	325, 326, 454
BsaAI	YACGTR	1 cut(s)	1575
BsaHI	GRCGYC	1 cut(s)	1674
BsaI	GGTCTC	3 cut(s)	295, 338, 730
BsaJI	CCNNGG	5 cut(s)	174, 324, 447, 729, 772
BsaWI	WCCGGW	3 cut(s)	220, 396, 1710
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	5 cut(s)	302, 652, 1137, 1598, 1667
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	106
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	176, 448
BseDI	CCNNGG	5 cut(s)	174, 324, 447, 729, 772
BseGI	GGATG	6 cut(s)	462, 559, 804, 1018, 1229, 1456
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	5 cut(s)	96, 135, 264, 885, 1173
BseNI	ACTGG	5 cut(s)	302, 652, 1137, 1598, 1667
BseRI	GAGGAG	2 cut(s)	290, 368
BseSI	GKGCMC	1 cut(s)	640
BseX3I	CGGCCG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	1405
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	647, 1359
Bsh1285I	CGRYCG	2 cut(s)	407, 411
BshFI	GGCC	9 cut(s)	245, 380, 406, 452, 573, 771, 1136, 1260, 1598
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	2 cut(s)	407, 411
BsiHKAI	GWGCWC	6 cut(s)	13, 282, 360, 640, 840, 1104
BsiHKCI	CYCGRG	3 cut(s)	324, 341, 359
BsiSI	CCGG	6 cut(s)	221, 325, 397, 407, 453, 1711
BslFI	GGGAC	4 cut(s)	319, 409, 966, 1595
BsmAI	GTCTC	5 cut(s)	295, 338, 730, 970, 1271
BsmFI	GGGAC	4 cut(s)	319, 409, 966, 1595
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	9 cut(s)	245, 380, 406, 452, 573, 771, 1136, 1260, 1598
Bso31I	GGTCTC	3 cut(s)	295, 338, 730
BsoBI	CYCGRG	3 cut(s)	324, 341, 359
Bsp1286I	GDGCHC	7 cut(s)	13, 282, 360, 640, 840, 1104, 1421
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
BspACI	CCGC	9 cut(s)	126, 151, 189, 195, 256, 303, 777, 1504, 1635
BspANI	GGCC	9 cut(s)	245, 380, 406, 452, 573, 771, 1136, 1260, 1598
BspCNI	CTCAG	5 cut(s)	95, 136, 265, 886, 1174
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	8 cut(s)	193, 307, 308, 539, 982, 1297, 1611, 1715
BspMAI	CTGCAG	1 cut(s)	1644
BspMI	ACCTGC	4 cut(s)	619, 667, 1381, 1387
BspPI	GGATC	5 cut(s)	539, 573, 734, 1708, 1721
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	3 cut(s)	295, 338, 730
BsrBI	CCGCTC	2 cut(s)	303, 1637
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	5 cut(s)	302, 652, 1137, 1598, 1667
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	5 cut(s)	174, 324, 447, 729, 772
BssMI	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
BssNI	GRCGYC	1 cut(s)	1674
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	176, 448
Bst4CI	ACNGT	9 cut(s)	19, 108, 114, 289, 847, 940, 1085, 1266, 1563
Bst6I	CTCTTC	3 cut(s)	503, 1359, 1521
BstACI	GRCGYC	1 cut(s)	1674
BstBAI	YACGTR	1 cut(s)	1575
BstC8I	GCNNGC	7 cut(s)	29, 90, 525, 763, 1408, 1504, 1644
BstDEI	CTNAG	8 cut(s)	82, 144, 273, 708, 894, 1182, 1413, 1652
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	6 cut(s)	462, 559, 804, 1018, 1229, 1456
BstH2I	RGCGCY	2 cut(s)	28, 1399
BstHHI	GCGC	2 cut(s)	27, 1398
BstKTI	GATC	8 cut(s)	534, 568, 684, 742, 1039, 1159, 1342, 1716
BstMAI	GTCTC	5 cut(s)	295, 338, 730, 970, 1271
BstMBI	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
BstMCI	CGRYCG	2 cut(s)	407, 411
BstMWI	GCNNNNNNNGC	6 cut(s)	835, 1416, 1643, 1648, 1657, 1738
BstNI	CCWGG	2 cut(s)	176, 448
BstNSI	RCATGY	1 cut(s)	908
BstSCI	CCNGG	5 cut(s)	174, 323, 324, 446, 452
BstSFI	CTRYAG	3 cut(s)	1042, 1540, 1640
BstSLI	GKGCMC	1 cut(s)	640
BstSNI	TACGTA	1 cut(s)	1575
BstV1I	GCAGC	1 cut(s)	1405
BstX2I	RGATCY	3 cut(s)	739, 1339, 1713
BstYI	RGATCY	3 cut(s)	739, 1339, 1713
BstZI	CGGCCG	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	1205, 1564
BsuRI	GGCC	9 cut(s)	245, 380, 406, 452, 573, 771, 1136, 1260, 1598
BtrI	CACGTC	1 cut(s)	954
BtsCI	GGATG	6 cut(s)	462, 559, 804, 1018, 1229, 1456
BtsIMutI	CAGTG	4 cut(s)	15, 1090, 1271, 1591
BveI	ACCTGC	4 cut(s)	619, 667, 1381, 1387
Cac8I	GCNNGC	7 cut(s)	29, 90, 525, 763, 1408, 1504, 1644
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	2 cut(s)	27, 1398
Cfr10I	RCCGGY	1 cut(s)	406
Cfr9I	CCCGGG	1 cut(s)	324
CseI	GACGC	1 cut(s)	1682
Csp6I	GTAC	7 cut(s)	157, 166, 394, 645, 1063, 1073, 1483
CviAII	CATG	9 cut(s)	160, 475, 641, 688, 856, 905, 1423, 1464, 1480
CviQI	GTAC	7 cut(s)	157, 166, 394, 645, 1063, 1073, 1483
DdeI	CTNAG	8 cut(s)	82, 144, 273, 708, 894, 1182, 1413, 1652
DpnI	GATC	8 cut(s)	533, 567, 683, 741, 1038, 1158, 1341, 1715
DpnII	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
EaeI	YGGCCR	2 cut(s)	404, 1258
EagI	CGGCCG	1 cut(s)	404
Eam1104I	CTCTTC	3 cut(s)	503, 1359, 1521
EarI	CTCTTC	3 cut(s)	503, 1359, 1521
Ecl136II	GAGCTC	4 cut(s)	11, 280, 358, 1102
EclXI	CGGCCG	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	1575
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	5 cut(s)	13, 282, 360, 1104, 1421
Eco31I	GGTCTC	3 cut(s)	295, 338, 730
Eco47I	GGWCC	6 cut(s)	148, 306, 316, 538, 980, 1609
Eco47III	AGCGCT	2 cut(s)	26, 1397
Eco52I	CGGCCG	1 cut(s)	404
Eco53kI	GAGCTC	4 cut(s)	11, 280, 358, 1102
Eco57I	CTGAAG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	3 cut(s)	324, 341, 359
EcoICRI	GAGCTC	4 cut(s)	11, 280, 358, 1102
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoO109I	RGGNCCY	4 cut(s)	306, 571, 980, 1609
EcoRII	CCWGG	2 cut(s)	174, 446
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	5 cut(s)	13, 282, 360, 1104, 1421
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	9 cut(s)	163, 478, 644, 691, 859, 908, 1426, 1467, 1483
FalI	AAGNNNNNCTT	2 cut(s)	1614, 1646
FaqI	GGGAC	4 cut(s)	319, 409, 966, 1595
FatI	CATG	9 cut(s)	159, 474, 640, 687, 855, 904, 1422, 1463, 1479
FauI	CCCGC	2 cut(s)	296, 1511
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	2 cut(s)	195, 1394
FokI	GGATG	6 cut(s)	469, 566, 791, 1025, 1236, 1463
FriOI	GRGCYC	5 cut(s)	13, 282, 360, 1104, 1421
Fsp4HI	GCNGC	2 cut(s)	195, 1394
GlaI	GCGC	2 cut(s)	26, 1397
GluI	GCNGC	2 cut(s)	195, 1394
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	319, 1216
HaeII	RGCGCY	2 cut(s)	28, 1399
HaeIII	GGCC	9 cut(s)	245, 380, 406, 452, 573, 771, 1136, 1260, 1598
HapII	CCGG	6 cut(s)	221, 325, 397, 407, 453, 1711
HgaI	GACGC	1 cut(s)	1682
HhaI	GCGC	2 cut(s)	27, 1398
Hin1I	GRCGYC	1 cut(s)	1674
Hin1II	CATG	9 cut(s)	163, 478, 644, 691, 859, 908, 1426, 1467, 1483
Hin6I	GCGC	2 cut(s)	25, 1396
HinP1I	GCGC	2 cut(s)	25, 1396
HincII	GTYRAC	2 cut(s)	817, 1672
HindII	GTYRAC	2 cut(s)	817, 1672
HindIII	AAGCTT	1 cut(s)	1739
HinfI	GANTC	4 cut(s)	48, 400, 1174, 1426
HpaII	CCGG	6 cut(s)	221, 325, 397, 407, 453, 1711
HphI	GGTGA	2 cut(s)	102, 691
Hpy166II	GTNNAC	5 cut(s)	168, 638, 817, 1090, 1672
Hpy188I	TCNGA	6 cut(s)	145, 666, 895, 1207, 1276, 1756
Hpy8I	GTNNAC	5 cut(s)	168, 638, 817, 1090, 1672
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	4 cut(s)	220, 235, 1354, 1496
HpyCH4III	ACNGT	9 cut(s)	19, 108, 114, 289, 847, 940, 1085, 1266, 1563
HpyCH4IV	ACGT	3 cut(s)	953, 1029, 1574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	835, 1416, 1643, 1648, 1657, 1738
HpyF3I	CTNAG	8 cut(s)	82, 144, 273, 708, 894, 1182, 1413, 1652
HpySE526I	ACGT	3 cut(s)	953, 1029, 1574
Hsp92I	GRCGYC	1 cut(s)	1674
Hsp92II	CATG	9 cut(s)	163, 478, 644, 691, 859, 908, 1426, 1467, 1483
HspAI	GCGC	2 cut(s)	25, 1396
KflI	GGGWCCC	1 cut(s)	306
Kpn2I	TCCGGA	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
LmnI	GCTCC	8 cut(s)	36, 277, 285, 300, 355, 604, 826, 1387
Lsp1109I	GCAGC	1 cut(s)	1405
LweI	GCATC	5 cut(s)	137, 143, 149, 1489, 1555
MaeII	ACGT	3 cut(s)	953, 1029, 1574
MaeIII	GTNAC	4 cut(s)	108, 697, 799, 949
MalI	GATC	8 cut(s)	533, 567, 683, 741, 1038, 1158, 1341, 1715
MbiI	CCGCTC	2 cut(s)	303, 1637
MboI	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
MboII	GAAGA	7 cut(s)	244, 517, 520, 872, 1376, 1538, 1572
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	3 cut(s)	739, 1339, 1713
MhlI	GDGCHC	7 cut(s)	13, 282, 360, 640, 840, 1104, 1421
MlsI	TGGCCA	1 cut(s)	1260
MluCI	AATT	7 cut(s)	55, 463, 545, 692, 884, 1236, 1697
MluNI	TGGCCA	1 cut(s)	1260
MlyI	GAGTC	1 cut(s)	1435
MmeI	TCCRAC	2 cut(s)	1185, 1514
Mox20I	TGGCCA	1 cut(s)	1260
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	1020
MscI	TGGCCA	1 cut(s)	1260
MseI	TTAA	3 cut(s)	77, 561, 1521
MslI	CAYNNNNRTG	3 cut(s)	1032, 1478, 1564
Msp20I	TGGCCA	1 cut(s)	1260
MspA1I	CMGCKG	1 cut(s)	1292
MspI	CCGG	6 cut(s)	221, 325, 397, 407, 453, 1711
MspR9I	CCNGG	5 cut(s)	176, 325, 326, 448, 454
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	2 cut(s)	176, 448
MwoI	GCNNNNNNNGC	6 cut(s)	835, 1416, 1643, 1648, 1657, 1738
NciI	CCSGG	3 cut(s)	325, 326, 454
NdeII	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
NlaIII	CATG	9 cut(s)	163, 478, 644, 691, 859, 908, 1426, 1467, 1483
NlaIV	GGNNCC	8 cut(s)	193, 307, 308, 539, 982, 1297, 1611, 1715
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	3 cut(s)	108, 697, 949
NspI	RCATGY	1 cut(s)	908
OliI	CACNNNNGTG	2 cut(s)	1032, 1564
PaeR7I	CTCGAG	1 cut(s)	359
PaqCI	CACCTGC	2 cut(s)	667, 1387
PciI	ACATGT	1 cut(s)	904
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	3 cut(s)	48, 400, 1174
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	196, 1395
PleI	GAGTC	1 cut(s)	1434
PpsI	GAGTC	1 cut(s)	1434
Ppu21I	YACGTR	1 cut(s)	1575
PpuMI	RGGWCCY	3 cut(s)	306, 980, 1609
PscI	ACATGT	1 cut(s)	904
Psp124BI	GAGCTC	4 cut(s)	13, 282, 360, 1104
Psp5II	RGGWCCY	3 cut(s)	306, 980, 1609
Psp6I	CCWGG	2 cut(s)	174, 446
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	174, 446
PspN4I	GGNNCC	8 cut(s)	193, 307, 308, 539, 982, 1297, 1611, 1715
PspPPI	RGGWCCY	3 cut(s)	306, 980, 1609
PstI	CTGCAG	1 cut(s)	1644
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	3 cut(s)	739, 1339, 1713
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	7 cut(s)	158, 167, 395, 646, 1064, 1074, 1484
RsaNI	GTAC	7 cut(s)	157, 166, 394, 645, 1063, 1073, 1483
RseI	CAYNNNNRTG	3 cut(s)	1032, 1478, 1564
SacI	GAGCTC	4 cut(s)	13, 282, 360, 1104
SaqAI	TTAA	3 cut(s)	77, 561, 1521
SatI	GCNGC	2 cut(s)	195, 1394
Sau3AI	GATC	8 cut(s)	531, 565, 681, 739, 1036, 1156, 1339, 1713
SchI	GAGTC	1 cut(s)	1435
ScrFI	CCNGG	5 cut(s)	176, 325, 326, 448, 454
SduI	GDGCHC	7 cut(s)	13, 282, 360, 640, 840, 1104, 1421
SfaNI	GCATC	5 cut(s)	137, 143, 149, 1489, 1555
SfcI	CTRYAG	3 cut(s)	1042, 1540, 1640
Sfr274I	CTCGAG	1 cut(s)	359
SinI	GGWCC	6 cut(s)	148, 306, 316, 538, 980, 1609
SlaI	CTCGAG	1 cut(s)	359
SmaI	CCCGGG	1 cut(s)	326
SmiMI	CAYNNNNRTG	3 cut(s)	1032, 1478, 1564
SmlI	CTYRAG	4 cut(s)	350, 359, 1055, 1441
SmoI	CTYRAG	4 cut(s)	350, 359, 1055, 1441
SnaBI	TACGTA	1 cut(s)	1575
Sse9I	AATT	7 cut(s)	55, 463, 545, 692, 884, 1236, 1697
SsiI	CCGC	9 cut(s)	126, 151, 189, 195, 256, 303, 777, 1504, 1635
SstI	GAGCTC	4 cut(s)	13, 282, 360, 1104
StyD4I	CCNGG	5 cut(s)	174, 323, 324, 446, 452
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	9 cut(s)	19, 108, 114, 289, 847, 940, 1085, 1266, 1563
TaiI	ACGT	3 cut(s)	956, 1032, 1577
TaqI	TCGA	2 cut(s)	360, 968
TasI	AATT	7 cut(s)	55, 463, 545, 692, 884, 1236, 1697
TatI	WGTACW	2 cut(s)	156, 1062
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	48, 400, 1174
Tru1I	TTAA	3 cut(s)	77, 561, 1521
Tru9I	TTAA	3 cut(s)	77, 561, 1521
TscAI	CASTG	4 cut(s)	22, 1090, 1271, 1598
TseFI	GTSAC	3 cut(s)	108, 697, 949
TseI	GCWGC	1 cut(s)	1393
Tsp45I	GTSAC	3 cut(s)	108, 697, 949
TspDTI	ATGAA	6 cut(s)	704, 1029, 1248, 1331, 1452, 1602
TspGWI	ACGGA	3 cut(s)	1025, 1127, 1709
TspMI	CCCGGG	1 cut(s)	324
TspRI	CASTG	4 cut(s)	22, 1090, 1271, 1598
Van91I	CCANNNNNTGG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	6 cut(s)	148, 306, 316, 538, 980, 1609
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	1 cut(s)	1236
XceI	RCATGY	1 cut(s)	908
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	359
XmaI	CCCGGG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	1089
XmnI	GAANNNNTTC	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.