Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308169.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 482

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 190 bp

gaccagattgcaactcccactcccacctggttactttggtaatgtgattttcatagccacagcaacaaacttagcaggggaactcatatcaaaaccattatcgtatgccgcaagctgtattcacaatgctgtggtgcgtatggatgatgattatgttcgatcagcacttgactatcttgaacttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

62

Amino Acids

6.83

Weight (kDa)

4.89

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	28
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	109
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	26
CviJI	RGCY	2 cut(s)	57, 115
CviKI_1	RGCY	2 cut(s)	57, 115
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	26
FaiI	YATR	5 cut(s)	54, 87, 106, 141, 154
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	13, 17, 40, 61
MabI	ACCWGGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	2 cut(s)	29, 117
SexAI	ACCWGGT	1 cut(s)	26
SgeI	CNNG	6 cut(s)	16, 39, 40, 88, 124, 180
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	26
TaqI	TCGA	1 cut(s)	158
TauI	GCSGC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.