RLG00000035873

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
72980399 .. 72981037
639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035873

Sequence Viewer

Length: 510 bp
ATGGTGAGGCCAGCAGCAGAGACTCCTCGGCAGTCGTTATGGGTCTCAAACATGGACTTGGTGCAGCGCACCACTCACACTCCCCTTGTTTATTTCTACAAGCCAAGCGACATCACTGGTGCAGGCAAGGACAACAATTTCTTTGACATGTGCCTGCTAAAGGATGTACTTAGCAAGGCCCTCGTGCCCTTTTACCCTTTGGCAGACCGCCTACTGCAGAAAAAGGACAAGGGACAGAATGGTCATATCGAAATCGATTGCAATGCAGAGGGGGCCTTGTTTGCTATCACATACTTGAAATGCGGTGGAGTGGCACTTGGTCTTGGTGTGGACCATCGTGTATCAGATGGATTATCTACTTTACACTTCATAAATACATGGTCTGATATGGCTCGTGGTCTCGAGGTTGCAATTCGGCCAAGCATGGATAGAACGATACTCCGTGCCCGAGACCCACCTCAGCCTTTATCTGACTACAATCACCACATTGCATACCCTCCTCGGAATTAG

Protein Analysis

170

Amino Acids

18.92

Weight (kDa)

7.77

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 94 2.8e-14 Transferase family
Transferase PF02458 94 - 162 3.9e-15 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 240
AciI CCGC 2 cut(s) 208, 303
AcoI YGGCCR 1 cut(s) 416
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 298
Alw26I GTCTC 4 cut(s) 14, 49, 404, 444
Ama87I CYCGRG 2 cut(s) 401, 447
AoxI GGCC 4 cut(s) 8, 177, 273, 416
ApeKI GCWGC 2 cut(s) 14, 64
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 3 cut(s) 178, 273, 331
AsuHPI GGTGA 2 cut(s) 16, 473
AvaI CYCGRG 2 cut(s) 401, 447
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 2 cut(s) 189, 448
BauI CACGAG 2 cut(s) 182, 393
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 26, 76
BccI CCATC 2 cut(s) 341, 342
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 245, 279
BcoDI GTCTC 4 cut(s) 14, 49, 404, 444
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 15, 65
BlsI GCNGC 2 cut(s) 16, 66
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 2 cut(s) 401, 447
BmgT120I GGNCC 3 cut(s) 178, 273, 331
BmiI GGNNCC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 255
BsaI GGTCTC 3 cut(s) 49, 404, 444
BsaJI CCNNGG 2 cut(s) 26, 500
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 268, 486
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 26, 500
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 2 cut(s) 268, 486
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 15, 489
BseSI GKGCMC 2 cut(s) 189, 448
BseXI GCAGC 2 cut(s) 26, 76
BsgI GTGCAG 2 cut(s) 83, 141
BshFI GGCC 4 cut(s) 10, 179, 275, 418
BshVI ATCGAT 1 cut(s) 255
BsiHKCI CYCGRG 2 cut(s) 401, 447
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 4 cut(s) 14, 49, 404, 444
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 4 cut(s) 10, 179, 275, 418
Bso31I GGTCTC 3 cut(s) 49, 404, 444
BsoBI CYCGRG 2 cut(s) 401, 447
Bsp1286I GDGCHC 2 cut(s) 189, 448
BspACI CCGC 2 cut(s) 208, 303
BspANI GGCC 4 cut(s) 10, 179, 275, 418
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 219
BspTNI GGTCTC 3 cut(s) 49, 404, 444
BsrDI GCAATG 2 cut(s) 268, 486
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 26, 500
BssSI CACGAG 2 cut(s) 182, 393
Bst2BI CACGAG 2 cut(s) 182, 393
BstC8I GCNNGC 3 cut(s) 12, 124, 155
BstDEI CTNAG 2 cut(s) 170, 459
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 69
BstMAI GTCTC 4 cut(s) 14, 49, 404, 444
BstMWI GCNNNNNNNGC 2 cut(s) 272, 281
BstNSI RCATGY 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 2 cut(s) 189, 448
BstV1I GCAGC 2 cut(s) 26, 76
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 4 cut(s) 10, 179, 275, 418
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 12, 124, 155
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 178, 273, 331
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 167
CviAII CATG 4 cut(s) 52, 148, 378, 424
CviJI RGCY 7 cut(s) 10, 103, 179, 275, 392, 418, 463
CviKI_1 RGCY 7 cut(s) 10, 103, 179, 275, 392, 418, 463
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 2 cut(s) 170, 459
DrdI GACNNNNNNGTC 1 cut(s) 240
DseDI GACNNNNNNGTC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 416
Eco31I GGTCTC 3 cut(s) 49, 404, 444
Eco47I GGWCC 1 cut(s) 331
Eco88I CYCGRG 2 cut(s) 401, 447
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 2 cut(s) 178, 273
FaeI CATG 4 cut(s) 55, 151, 381, 427
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 51, 147, 377, 423
Fnu4HI GCNGC 2 cut(s) 15, 65
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 15, 65
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 15, 65
HaeIII GGCC 4 cut(s) 10, 179, 275, 418
HhaI GCGC 1 cut(s) 69
Hin1II CATG 4 cut(s) 55, 151, 381, 427
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 22
HphI GGTGA 2 cut(s) 16, 473
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 4 cut(s) 346, 385, 472, 504
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 331
HpyCH4V TGCA 7 cut(s) 64, 122, 217, 261, 266, 410, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 281
HpyF3I CTNAG 2 cut(s) 170, 459
Hsp92II CATG 4 cut(s) 55, 151, 381, 427
HspAI GCGC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 24, 102, 108, 167
Lsp1109I GCAGC 2 cut(s) 26, 76
MhlI GDGCHC 2 cut(s) 189, 448
MluCI AATT 3 cut(s) 136, 411, 505
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 7 cut(s) 36, 191, 262, 397, 468, 507, 510
MwoI GCNNNNNNNGC 2 cut(s) 272, 281
NlaIII CATG 4 cut(s) 55, 151, 381, 427
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 7
NspI RCATGY 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 401
PciI ACATGT 1 cut(s) 147
PkrI GCNGC 2 cut(s) 16, 66
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PscI ACATGT 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 3 cut(s) 178, 273, 331
PstI CTGCAG 1 cut(s) 219
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SatI GCNGC 2 cut(s) 15, 65
Sau96I GGNCC 3 cut(s) 178, 273, 331
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 2 cut(s) 189, 448
SetI ASST 2 cut(s) 408, 460
SfcI CTRYAG 1 cut(s) 215
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 331
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 136, 411, 505
SsiI CCGC 2 cut(s) 208, 303
TaqI TCGA 3 cut(s) 249, 255, 402
TasI AATT 3 cut(s) 136, 411, 505
TatI WGTACW 1 cut(s) 166
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 14, 64
TspDTI ATGAA 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 158
XceI RCATGY 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.