Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025032.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 661

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025032.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

gttacatatttcaaatgcggcggagtgtcacttggtgttggcatggaacaccgggttgcagatggatattcaggtctccatcttataaatacatggtctgatatcgctcgtggcctcgaccttacaattccaccattcatcgaccgcacactactatgtgcccgagatccgccccggcctgcattcccccacatcgaataccaacccggtccgtctatgaaaactcctcttgatgctgctcagatgacaccaacagtggtctccattttcaagctgacaccagaccagctcaacaacttgaaagccaagtttaaacaagatgggaacaacaccatcaaattcagctcatatgaaatgttggcaggtcatatatggcgatgtgcatgcaaggcacgccgactccccgatgatcaagagacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

8.41

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	353
AciI	CCGC	4 cut(s)	18, 21, 145, 170
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	13, 271, 301
AluBI	AGCT	3 cut(s)	274, 289, 345
AluI	AGCT	3 cut(s)	274, 289, 345
Alw26I	GTCTC	3 cut(s)	80, 265, 410
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	112, 176
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	3 cut(s)	53, 175, 207
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	4 cut(s)	56, 87, 314, 341
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	3 cut(s)	53, 175, 207
BcoDI	GTCTC	3 cut(s)	80, 265, 410
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	19, 237
BlsI	GCNGC	2 cut(s)	20, 238
Bme1390I	CCNGG	3 cut(s)	53, 175, 207
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	53, 175, 207
BmsI	GCATC	1 cut(s)	223
BpuMI	CCSGG	3 cut(s)	53, 175, 207
BsaI	GGTCTC	3 cut(s)	80, 265, 410
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
BseDI	CCNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	114, 178
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	52, 175, 207
BsmAI	GTCTC	3 cut(s)	80, 265, 410
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	114, 178
Bso31I	GGTCTC	3 cut(s)	80, 265, 410
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	166, 409
BspACI	CCGC	4 cut(s)	18, 21, 145, 170
BspANI	GGCC	2 cut(s)	114, 178
BspCNI	CTCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	3 cut(s)	80, 265, 410
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	166, 409
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	180, 385, 394
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	169, 412
BstMAI	GTCTC	3 cut(s)	80, 265, 410
BstMBI	GATC	2 cut(s)	166, 409
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 393
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	51, 173, 205
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	114, 178
BtgZI	GCGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	3 cut(s)	180, 385, 394
Cfr13I	GGNCC	1 cut(s)	209
CpoI	CGGWCCG	1 cut(s)	209
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	3 cut(s)	43, 93, 384
CviJI	RGCY	6 cut(s)	114, 178, 274, 289, 305, 345
CviKI_1	RGCY	6 cut(s)	114, 178, 274, 289, 305, 345
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	168, 411
DpnII	GATC	2 cut(s)	166, 409
DraI	TTTAAA	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	35
EciI	GGCGGA	2 cut(s)	36, 159
Eco31I	GGTCTC	3 cut(s)	80, 265, 410
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	3 cut(s)	46, 96, 387
FatI	CATG	3 cut(s)	42, 92, 383
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	19, 237
Fsp4HI	GCNGC	2 cut(s)	19, 237
GluI	GCNGC	2 cut(s)	19, 237
HaeIII	GGCC	2 cut(s)	114, 178
HapII	CCGG	3 cut(s)	52, 175, 207
Hin1II	CATG	3 cut(s)	46, 96, 387
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	3 cut(s)	52, 175, 207
Hpy188I	TCNGA	2 cut(s)	100, 243
Hpy188III	TCNNGA	2 cut(s)	230, 413
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	59, 182, 383, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 393
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	46, 96, 387
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	166, 409
LpnPI	CCDG	8 cut(s)	57, 65, 188, 192, 220, 294, 299, 348
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	2 cut(s)	168, 411
MboI	GATC	2 cut(s)	166, 409
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	126, 338
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	2 cut(s)	125, 237
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	154
MspI	CCGG	3 cut(s)	52, 175, 207
MspR9I	CCNGG	3 cut(s)	53, 175, 207
MssI	GTTTAAAC	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	389, 393
NciI	CCSGG	3 cut(s)	53, 175, 207
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	2 cut(s)	166, 409
NlaIII	CATG	3 cut(s)	46, 96, 387
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	20, 238
PleI	GAGTC	1 cut(s)	393
PmeI	GTTTAAAC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	154
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	19, 237
Sau3AI	GATC	2 cut(s)	166, 409
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	3 cut(s)	53, 175, 207
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	6 cut(s)	76, 123, 276, 291, 347, 367
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	154
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	2 cut(s)	126, 338
SsiI	CCGC	4 cut(s)	18, 21, 145, 170
StyD4I	CCNGG	3 cut(s)	51, 173, 205
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	117, 141, 195
TasI	AATT	2 cut(s)	126, 338
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	3 cut(s)	127, 233, 366
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.