Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014046.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

7952 .. 8488

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014046.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgttggcaggtcatatatggcgatgtgcatgcaaggcacgccgactccccgatgatcaagagaccaaactgtatatcgccactgatggaaggtccagactgaagcctccactccctccgggttactttggcaatgtgattttctcagctgggccattcgctacagcaggggatctccaatcaaaaccgatatggtatgcttcaagctgtatacaaaatactttggcacgcatggacgatgaatatcttagatcaacaatcgactatcttgagattcagccggatctttcggcacttgttcgcggggctcatagttttcgctgcccaaaaatggggattactagttgggttaggctgccgatccatgatgctgatttcggctggggtcgacccattttcatgggacctggagggattgcatttgaaggcttgtgcttcattttaccgagtgcaagtaaagacgggagcttatcagtggccatttcactccaagctgaacatatgaaatcgttttcgaagttcttatatgacatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

8.28

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	211, 388
AccII	CGCG	1 cut(s)	303
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	3 cut(s)	180, 291, 355
AcoI	YGGCCR	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	331, 332
AgsI	TTSAA	2 cut(s)	204, 425
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	4 cut(s)	149, 207, 468, 494
AluI	AGCT	4 cut(s)	149, 207, 468, 494
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	180, 291, 355
AoxI	GGCC	2 cut(s)	152, 477
ApeKI	GCWGC	2 cut(s)	321, 355
AspS9I	GGNCC	3 cut(s)	93, 152, 404
AsuC2I	CCSGG	1 cut(s)	120
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	93, 404
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	308, 342
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	56
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	322, 356
BlsI	GCNGC	2 cut(s)	323, 357
Bme1390I	CCNGG	2 cut(s)	120, 408
Bme18I	GGWCC	2 cut(s)	93, 404
BmgT120I	GGNCC	3 cut(s)	93, 152, 404
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	120, 408
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 332
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	331, 332
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	308, 342
BseYI	CCCAGC	2 cut(s)	149, 381
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	154, 479
BsiSI	CCGG	2 cut(s)	119, 281
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	331, 332
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	154, 479
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	55, 172, 251, 283, 360
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	154, 479
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	180, 291, 355
BspT104I	TTCGAA	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	139
BssMI	GATC	5 cut(s)	55, 172, 251, 283, 360
BssNAI	GTATAC	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	31, 40, 229
BstDEI	CTNAG	2 cut(s)	145, 248
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	5 cut(s)	58, 175, 254, 286, 363
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	5 cut(s)	55, 172, 251, 283, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 39
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	118, 406
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	308, 342
BstX2I	RGATCY	2 cut(s)	172, 283
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	2 cut(s)	172, 283
BstZ17I	GTATAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	154, 479
BtgZI	GCGATG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	81, 480
Cac8I	GCNNGC	3 cut(s)	31, 40, 229
Cfr13I	GGNCC	3 cut(s)	93, 152, 404
CviAII	CATG	4 cut(s)	30, 232, 365, 400
DdeI	CTNAG	2 cut(s)	145, 248
DpnI	GATC	5 cut(s)	57, 174, 253, 285, 362
DpnII	GATC	5 cut(s)	55, 172, 251, 283, 360
EaeI	YGGCCR	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	93, 404
Eco57I	CTGAAG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	4 cut(s)	33, 235, 368, 403
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	4 cut(s)	29, 231, 364, 399
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	2 cut(s)	211, 388
Fnu4HI	GCNGC	2 cut(s)	322, 356
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	322, 356
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	2 cut(s)	322, 356
GsaI	CCCAGC	2 cut(s)	153, 385
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	154, 479
HapII	CCGG	2 cut(s)	119, 281
Hin1II	CATG	4 cut(s)	33, 235, 368, 403
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	45, 274
HpaII	CCGG	2 cut(s)	119, 281
Hpy166II	GTNNAC	2 cut(s)	212, 389
Hpy188III	TCNNGA	3 cut(s)	59, 96, 269
Hpy8I	GTNNAC	2 cut(s)	212, 389
HpyAV	CCTTC	2 cut(s)	84, 419
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	29, 33, 419, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 39
HpyF3I	CTNAG	2 cut(s)	145, 248
Hsp92II	CATG	4 cut(s)	33, 235, 368, 403
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	55, 172, 251, 283, 360
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	8 cut(s)	109, 132, 135, 153, 294, 367, 393, 420
Lsp1109I	GCAGC	2 cut(s)	308, 342
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	5 cut(s)	57, 174, 253, 285, 362
MboI	GATC	5 cut(s)	55, 172, 251, 283, 360
MflI	RGATCY	2 cut(s)	172, 283
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	3 cut(s)	117, 126, 404
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	119, 281
MspR9I	CCNGG	2 cut(s)	120, 408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	35, 39
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	5 cut(s)	55, 172, 251, 283, 360
NlaIII	CATG	4 cut(s)	33, 235, 368, 403
NlaIV	GGNNCC	1 cut(s)	405
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	323, 357
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	149, 381
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	3 cut(s)	93, 152, 404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	172, 283
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	387
SatI	GCNGC	2 cut(s)	322, 356
Sau3AI	GATC	5 cut(s)	55, 172, 251, 283, 360
Sau96I	GGNCC	3 cut(s)	93, 152, 404
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	120, 408
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	13, 95, 151, 209, 409, 470, 496
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	2 cut(s)	93, 404
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	33
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	118, 406
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	261, 388, 515
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	2 cut(s)	88, 480
TseI	GCWGC	2 cut(s)	321, 355
TspDTI	ATGAA	4 cut(s)	255, 388, 427, 518
TspRI	CASTG	2 cut(s)	88, 480
VpaK11BI	GGWCC	2 cut(s)	93, 404
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	2 cut(s)	211, 388
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.