RchiOBHm_Chr2g0132571

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
49177276 .. 49178189
914 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50383

Sequence Viewer

Length: 858 bp
ATGTGTTTGTTTTTAATTTTATACATTGCTACTGGATTTAACTCTAAGCAGGTTACATACTTCAAATGTGGTGGAGTGTCACTTGGTGTTGGCATGGAACACCGGGTAGCAGATGGATATTCTGGTCTCCATTTCATAAATACATGGTCTGATATCGCTCGTGGCCTCGACCTCACAATTCCACCATTCATCGACCGCACATTACTACGTGCTCGAGATCCGCCCCGGCCTGCATTCCCCCACATCGAATACCAACCCGGTCGGTCTATGAAAACTCCTCTTGATGCTGCTCAGATGACATCAACAATGGTCTCCATTTTCAAGCTGACACCAGACCAGCTCAACACCTTGAAAGCCAAGTCATATATGGCGATGTGCATGCAGGCACGCCGACTCCCCGATGATCAAGAGACCAAACTGCATATCGCCACTGATGGAAGGTCCAGACTGAAGCCTCCACTCCCTCCGGGTTACTTTGGCAATGTGATTTTCTCAGCTGGGCCATTCGCTACAGCAGGGGATCTCCAATCAAAACCGATATGGTATGCTTCAAGCTGTATACAAAATACTTTGGCACGCATGGACGATGAATATCTTAGATCAGCAATCGACTATCTTGAGATTCAGCCGGATCTTTCGGCACTTGTTCGCGGGGCTCATAGTTTTCGCTGCCCAAAAATGGGGATTACTAGTTGGGTTAGGCTGCCGATCCATGATGCTGATTTCGGCTGGGGTCGACCCATTTTCATGGGACCTGGAGGGATTGCATTTGAAGGCTTGTGCTTCATTTTACCGAGTGCAAGTAAAGACGGGAGCTTATCAGTGGCCATGCCATTTCACTCCAAGCTGAACATATGA

Protein Analysis

285

Amino Acids

31.55

Weight (kDa)

8.87

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 276 8e-50 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccI GTMKAC 2 cut(s) 559, 736
AccII CGCG 1 cut(s) 651
AciI CCGC 3 cut(s) 196, 221, 651
AclWI GGATC 4 cut(s) 212, 528, 639, 703
AcoI YGGCCR 1 cut(s) 825
AcuI CTGAAG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 679, 680
AgsI TTSAA 5 cut(s) 64, 322, 352, 552, 773
AhlI ACTAGT 1 cut(s) 689
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 6 cut(s) 325, 340, 497, 555, 816, 847
AluI AGCT 6 cut(s) 325, 340, 497, 555, 816, 847
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 3 cut(s) 131, 316, 404
AlwI GGATC 4 cut(s) 212, 528, 639, 703
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 4 cut(s) 163, 227, 500, 825
ApeKI GCWGC 3 cut(s) 287, 669, 703
AspS9I GGNCC 3 cut(s) 441, 500, 752
AsuC2I CCSGG 4 cut(s) 104, 226, 258, 468
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 441, 752
BalI TGGCCA 1 cut(s) 827
BanII GRGCYC 1 cut(s) 658
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 274, 656, 690
BccI CCATC 2 cut(s) 107, 428
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 4 cut(s) 104, 226, 258, 468
BcoDI GTCTC 3 cut(s) 131, 316, 404
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 3 cut(s) 288, 670, 704
BlsI GCNGC 3 cut(s) 289, 671, 705
Bme1390I CCNGG 5 cut(s) 104, 226, 258, 468, 756
Bme18I GGWCC 2 cut(s) 441, 752
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 441, 500, 752
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 5 cut(s) 104, 226, 258, 468, 756
BmsI GCATC 2 cut(s) 274, 706
BpmI CTGGAG 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 4 cut(s) 104, 226, 258, 468
BsaAI YACGTR 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 591
BsaI GGTCTC 3 cut(s) 131, 316, 404
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 680
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 24, 487
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 224
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 679, 680
BseMI GCAATG 2 cut(s) 24, 487
BseMII CTCAG 2 cut(s) 305, 507
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 3 cut(s) 274, 656, 690
BseYI CCCAGC 2 cut(s) 497, 729
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 2 cut(s) 196, 262
BshFI GGCC 4 cut(s) 165, 229, 502, 827
BsiEI CGRYCG 2 cut(s) 196, 262
BsiHKAI GWGCWC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 5 cut(s) 103, 226, 258, 467, 629
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 2 cut(s) 679, 680
BsmAI GTCTC 3 cut(s) 131, 316, 404
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 4 cut(s) 165, 229, 502, 827
Bso31I GGTCTC 3 cut(s) 131, 316, 404
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 214, 658
Bsp143I GATC 6 cut(s) 217, 403, 520, 599, 631, 708
BspACI CCGC 3 cut(s) 196, 221, 651
BspANI GGCC 4 cut(s) 165, 229, 502, 827
BspCNI CTCAG 2 cut(s) 304, 506
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 1 cut(s) 753
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 4 cut(s) 212, 528, 639, 703
BspTNI GGTCTC 3 cut(s) 131, 316, 404
BsrDI GCAATG 2 cut(s) 24, 487
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 6 cut(s) 217, 403, 520, 599, 631, 708
BssNAI GTATAC 1 cut(s) 560
BssSI CACGAG 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 756
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 5 cut(s) 231, 380, 384, 388, 577
BstDEI CTNAG 4 cut(s) 45, 291, 493, 596
BstFNI CGCG 1 cut(s) 651
BstKTI GATC 6 cut(s) 220, 406, 523, 602, 634, 711
BstMAI GTCTC 3 cut(s) 131, 316, 404
BstMBI GATC 6 cut(s) 217, 403, 520, 599, 631, 708
BstMCI CGRYCG 2 cut(s) 196, 262
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 5 cut(s) 102, 224, 256, 466, 754
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 274, 656, 690
BstX2I RGATCY 3 cut(s) 217, 520, 631
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 3 cut(s) 217, 520, 631
BstZ17I GTATAC 1 cut(s) 560
BsuRI GGCC 4 cut(s) 165, 229, 502, 827
BtgZI GCGATG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 429, 828
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 5 cut(s) 231, 380, 384, 388, 577
Cfr13I GGNCC 3 cut(s) 441, 500, 752
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 7 cut(s) 94, 144, 379, 580, 713, 748, 829
DdeI CTNAG 4 cut(s) 45, 291, 493, 596
DpnI GATC 6 cut(s) 219, 405, 522, 601, 633, 710
DpnII GATC 6 cut(s) 217, 403, 520, 599, 631, 708
DraIII CACNNNGTG 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 825
EciI GGCGGA 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 3 cut(s) 131, 316, 404
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 441, 752
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 752
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 658
FaeI CATG 7 cut(s) 97, 147, 382, 583, 716, 751, 832
FaqI GGGAC 1 cut(s) 765
FatI CATG 7 cut(s) 93, 143, 378, 579, 712, 747, 828
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 854
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 2 cut(s) 559, 736
Fnu4HI GCNGC 3 cut(s) 288, 670, 704
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 3 cut(s) 288, 670, 704
FspBI CTAG 1 cut(s) 690
GluI GCNGC 3 cut(s) 288, 670, 704
GsaI CCCAGC 2 cut(s) 501, 733
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 4 cut(s) 165, 229, 502, 827
HapII CCGG 5 cut(s) 103, 226, 258, 467, 629
Hin1II CATG 7 cut(s) 97, 147, 382, 583, 716, 751, 832
HincII GTYRAC 1 cut(s) 737
HindII GTYRAC 1 cut(s) 737
HinfI GANTC 2 cut(s) 393, 622
HpaII CCGG 5 cut(s) 103, 226, 258, 467, 629
Hpy166II GTNNAC 2 cut(s) 560, 737
Hpy188I TCNGA 2 cut(s) 151, 294
Hpy188III TCNNGA 5 cut(s) 215, 281, 407, 444, 617
Hpy8I GTNNAC 2 cut(s) 560, 737
HpyAV CCTTC 2 cut(s) 432, 767
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 6 cut(s) 233, 378, 382, 421, 767, 800
HpyF3I CTNAG 4 cut(s) 45, 291, 493, 596
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 7 cut(s) 97, 147, 382, 583, 716, 751, 832
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 6 cut(s) 217, 403, 520, 599, 631, 708
LmnI GCTCC 1 cut(s) 813
Lsp1109I GCAGC 3 cut(s) 274, 656, 690
LweI GCATC 2 cut(s) 274, 706
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 52, 78, 470
MalI GATC 6 cut(s) 219, 405, 522, 601, 633, 710
MboI GATC 6 cut(s) 217, 403, 520, 599, 631, 708
MflI RGATCY 3 cut(s) 217, 520, 631
MhlI GDGCHC 2 cut(s) 214, 658
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 2 cut(s) 15, 177
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 1 cut(s) 387
MnlI CCTC 6 cut(s) 176, 182, 288, 465, 474, 752
Mox20I TGGCCA 1 cut(s) 827
MscI TGGCCA 1 cut(s) 827
MseI TTAA 2 cut(s) 14, 39
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 5 cut(s) 103, 226, 258, 467, 629
MspR9I CCNGG 5 cut(s) 104, 226, 258, 468, 756
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 651
NciI CCSGG 4 cut(s) 104, 226, 258, 468
NdeI CATATG 1 cut(s) 854
NdeII GATC 6 cut(s) 217, 403, 520, 599, 631, 708
NlaIII CATG 7 cut(s) 97, 147, 382, 583, 716, 751, 832
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 1 cut(s) 78
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 213
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 622
PkrI GCNGC 3 cut(s) 289, 671, 705
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 754
PspFI CCCAGC 2 cut(s) 497, 729
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 3 cut(s) 441, 500, 752
PspPPI RGGWCCY 1 cut(s) 752
PsuI RGATCY 3 cut(s) 217, 520, 631
PvuII CAGCTG 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 746
SalI GTCGAC 1 cut(s) 735
SaqAI TTAA 2 cut(s) 14, 39
SatI GCNGC 3 cut(s) 288, 670, 704
Sau3AI GATC 6 cut(s) 217, 403, 520, 599, 631, 708
Sau96I GGNCC 3 cut(s) 441, 500, 752
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 5 cut(s) 104, 226, 258, 468, 756
SduI GDGCHC 2 cut(s) 214, 658
SfaNI GCATC 2 cut(s) 274, 706
SfcI CTRYAG 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 441, 752
SlaI CTCGAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 213, 617
SmoI CTYRAG 2 cut(s) 213, 617
SpeI ACTAGT 1 cut(s) 689
SphI GCATGC 1 cut(s) 382
Sse9I AATT 2 cut(s) 15, 177
SsiI CCGC 3 cut(s) 196, 221, 651
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 5 cut(s) 102, 224, 256, 466, 754
TaiI ACGT 1 cut(s) 211
TaqI TCGA 6 cut(s) 168, 192, 214, 246, 609, 736
TaqII GACCGA 1 cut(s) 252
TasI AATT 2 cut(s) 15, 177
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 2 cut(s) 14, 39
Tru9I TTAA 2 cut(s) 14, 39
TscAI CASTG 2 cut(s) 436, 828
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 3 cut(s) 287, 669, 703
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 6 cut(s) 124, 178, 284, 603, 736, 775
TspRI CASTG 2 cut(s) 436, 828
VpaK11BI GGWCC 2 cut(s) 441, 752
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 213
XmiI GTMKAC 2 cut(s) 559, 736
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.