Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000074.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

126857 .. 128773

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000074.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgtcgatcaacgtgagagtgcgggagtcaagggtggtgaagccatcagaggagacacctcgacatgcactgtggatttccaacttggacgtagtgatatccaacactcacatgggcagcgtttacttctaccggaggcaaaccggtgtccttggtgataacttcttcgagccgcacgtgctaaaggacgcactcagcaaggtcctcgtgcccttctaccccatagccggtcgactgacacgaaatgaggatggtcggctgcaaatcgattgcaatgcggagggtgtgctgtttgttgaggcggaaagcagctccgtcgtggatgactgtggggactttactcccacactcgagttccggcggctcatccccgccgttgattataccgctgggatatcctcttatcctctcctggtcttacagtcgcaaaagaccaacggcgacggcaaaattgcggatgtcgttggtggagtcgccattgctatttgcgacggcaatcacgccgtcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

170

Amino Acids

18.64

Weight (kDa)

5.31

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	8 cut(s)	22, 173, 278, 302, 361, 372, 387, 455
AcvI	CACGTG	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgeI	ACCGGT	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	117, 259, 309
AsiGI	ACCGGT	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	49, 167
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	129, 246, 321
BccI	CCATC	2 cut(s)	52, 245
BceAI	ACGGC	5 cut(s)	359, 454, 460, 488, 508
BcgI	CGANNNNNNTGC	6 cut(s)	187, 221, 257, 291, 298, 332
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	118, 173, 260, 310, 362
BlsI	GCNGC	5 cut(s)	119, 174, 261, 311, 363
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	267
BsaAI	YACGTR	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	132, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	2 cut(s)	143, 227
Bse3DI	GCAATG	2 cut(s)	280, 477
BseBI	CCWGG	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	4 cut(s)	256, 328, 366, 463
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	2 cut(s)	280, 477
BseMII	CTCAG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	129, 246, 321
BseYI	CCCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	232
BshTI	ACCGGT	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	133, 144, 228, 358
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	8 cut(s)	22, 173, 278, 302, 361, 372, 387, 455
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	267
BsrDI	GCAATG	2 cut(s)	280, 477
BsrFI	RCCGGY	2 cut(s)	143, 227
BssAI	RCCGGY	2 cut(s)	143, 227
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	72, 329, 423
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	256, 328, 366, 463
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	6
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	129, 246, 321
Bsu15I	ATCGAT	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	256, 328, 366, 463
BtsIMutI	CAGTG	1 cut(s)	68
Cfr10I	RCCGGY	2 cut(s)	143, 227
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	3 cut(s)	65, 112, 510
CviJI	RGCY	6 cut(s)	43, 172, 227, 259, 312, 364
CviKI_1	RGCY	6 cut(s)	43, 172, 227, 259, 312, 364
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	151
Eco32I	GATATC	2 cut(s)	99, 396
Eco47I	GGWCC	1 cut(s)	202
Eco72I	CACGTG	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	2 cut(s)	99, 396
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	68, 115, 513
FaiI	YATR	5 cut(s)	66, 113, 224, 384, 511
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	64, 111, 509
FauI	CCCGC	2 cut(s)	15, 379
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	5 cut(s)	118, 173, 260, 310, 362
FokI	GGATG	4 cut(s)	263, 335, 353, 470
Fsp4HI	GCNGC	5 cut(s)	118, 173, 260, 310, 362
GluI	GCNGC	5 cut(s)	118, 173, 260, 310, 362
GsaI	CCCAGC	1 cut(s)	393
HapII	CCGG	4 cut(s)	133, 144, 228, 358
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	68, 115, 513
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	26, 471
HpaII	CCGG	4 cut(s)	133, 144, 228, 358
HphI	GGTGA	2 cut(s)	49, 167
Hpy166II	GTNNAC	2 cut(s)	124, 233
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	124, 233
Hpy99I	CGWCG	3 cut(s)	320, 446, 494
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	72, 329, 423
HpyCH4IV	ACGT	3 cut(s)	12, 90, 177
HpyCH4V	TGCA	3 cut(s)	68, 262, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	3 cut(s)	12, 90, 177
Hsp92II	CATG	3 cut(s)	68, 115, 513
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	7 cut(s)	146, 157, 241, 371, 375, 398, 425
Lsp1109I	GCAGC	3 cut(s)	129, 246, 321
MaeII	ACGT	3 cut(s)	12, 90, 177
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	35, 480
MmeI	TCCRAC	2 cut(s)	105, 126
MnlI	CCTC	9 cut(s)	43, 69, 129, 215, 241, 274, 292, 409, 417
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	4 cut(s)	133, 144, 228, 358
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	68, 115, 513
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 238
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	119, 174, 261, 311, 363
PleI	GAGTC	2 cut(s)	34, 479
PmaCI	CACGTG	1 cut(s)	178
PmlI	CACGTG	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	34, 479
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	231
SatI	GCNGC	5 cut(s)	118, 173, 260, 310, 362
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	35, 480
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	15, 61, 93, 180, 204, 314
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	8 cut(s)	22, 173, 278, 302, 361, 372, 387, 455
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	72, 329, 423
TaiI	ACGT	3 cut(s)	15, 93, 180
TaqI	TCGA	6 cut(s)	5, 61, 168, 232, 267, 351
TasI	AATT	1 cut(s)	450
TauI	GCSGC	2 cut(s)	175, 364
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	3 cut(s)	117, 259, 309
Tsp45I	GTSAC	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.