Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000074.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

83517 .. 83993

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000074.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcgatcaacctgagcgtgcgggaatcgacgtttgtgaagccatcggaggagacgcctaggcgtgcgctttggatttccaacctggacgccgttgtgctcaacactcacatgggcagtgtttacttctacaggaggaaagccggcacgccgagtaacttcttcgacccagaagtgctcaaggaagccctcagcaaggcactcgtgtctttctaccccatggcaggccggcttaagatgaacatccacgaaggccgcagccgtgtcgaaatcgattgcaatggggagggggtgctctttgttgtagcggagaccagctctgtggtggatgactttggcgactttgctcccactctagagttccggcggctcatccctgccgttgattactccgctgggatatcatcttatccccttttggtcttacaggtatgtttaaggcaaaatgcatgtggcagtgtcactgtcaccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

6.11

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	22, 256, 308, 367, 393
AcyI	GRCGYC	2 cut(s)	56, 90
AfiI	CCNNNNNNNGG	2 cut(s)	196, 224
AflII	CTTAAG	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw21I	GWGCWC	3 cut(s)	102, 180, 297
Alw26I	GTCTC	2 cut(s)	47, 305
AoxI	GGCC	2 cut(s)	226, 253
ApeKI	GCWGC	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	460
AvrII	CCTAGG	1 cut(s)	59
BauI	CACGAG	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	102, 180, 297
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	3 cut(s)	77, 246, 365
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 247, 281
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	47, 305
BfaI	CTAG	2 cut(s)	60, 356
BfmI	CTRYAG	1 cut(s)	130
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	3 cut(s)	256, 259, 368
BlnI	CCTAGG	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	257, 260, 369
Bme1390I	CCNGG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu10I	CCTNAGC	2 cut(s)	14, 191
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	56, 90
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	59, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 224
Bse118I	RCCGGY	2 cut(s)	143, 228
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	59, 219
BseGI	GGATG	3 cut(s)	243, 334, 372
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	196, 224
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	5, 205
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	2 cut(s)	228, 255
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	3 cut(s)	102, 180, 297
BsiSI	CCGG	3 cut(s)	144, 229, 364
BslI	CCNNNNNNNGG	2 cut(s)	196, 224
BsmAI	GTCTC	2 cut(s)	47, 305
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	228, 255
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	102, 180, 297
Bsp143I	GATC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	5 cut(s)	22, 256, 308, 367, 393
BspANI	GGCC	2 cut(s)	228, 255
BspCNI	CTCAG	2 cut(s)	6, 204
BspDI	ATCGAT	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	2 cut(s)	143, 228
BssAI	RCCGGY	2 cut(s)	143, 228
BssECI	CCNNGG	2 cut(s)	59, 219
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	2 cut(s)	56, 90
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	59, 219
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	466
BstACI	GRCGYC	2 cut(s)	56, 90
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	6 cut(s)	20, 66, 145, 149, 226, 230
BstDEI	CTNAG	2 cut(s)	14, 191
BstDSI	CCRYGG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	243, 334, 372
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	47, 305
BstMBI	GATC	1 cut(s)	6
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	228, 255
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	3 cut(s)	243, 334, 372
BtsI	GCAGTG	2 cut(s)	124, 463
BtsIMutI	CAGTG	3 cut(s)	124, 462, 463
Cac8I	GCNNGC	6 cut(s)	20, 66, 145, 149, 226, 230
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	2 cut(s)	143, 228
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	2 cut(s)	64, 98
CviAII	CATG	3 cut(s)	112, 220, 450
CviJI	RGCY	9 cut(s)	43, 143, 188, 228, 232, 255, 261, 318, 370
CviKI_1	RGCY	9 cut(s)	43, 143, 188, 228, 232, 255, 261, 318, 370
DdeI	CTNAG	2 cut(s)	14, 191
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	59, 219
Eco31I	GGTCTC	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	59, 219
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	59, 219
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	3 cut(s)	115, 223, 453
FaiI	YATR	4 cut(s)	113, 221, 433, 451
FatI	CATG	3 cut(s)	111, 219, 449
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	256, 259, 368
FokI	GGATG	3 cut(s)	230, 341, 359
Fsp4HI	GCNGC	3 cut(s)	256, 259, 368
FspBI	CTAG	2 cut(s)	60, 356
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	3 cut(s)	256, 259, 368
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	228, 255
HapII	CCGG	3 cut(s)	144, 229, 364
HgaI	GACGC	2 cut(s)	64, 98
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	56, 90
Hin1II	CATG	3 cut(s)	115, 223, 453
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	3 cut(s)	144, 229, 364
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	279, 449
HpyF3I	CTNAG	2 cut(s)	14, 191
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	2 cut(s)	56, 90
Hsp92II	CATG	3 cut(s)	115, 223, 453
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	2 cut(s)	143, 228
KroNI	GCCGGC	2 cut(s)	145, 230
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	60, 356
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	155, 460, 466
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	102, 180, 297
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	4 cut(s)	43, 129, 200, 280
Mph1103I	ATGCAT	1 cut(s)	451
MroNI	GCCGGC	2 cut(s)	143, 228
MseI	TTAA	2 cut(s)	234, 437
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	3 cut(s)	144, 229, 364
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
NaeI	GCCGGC	2 cut(s)	145, 230
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	6
NgoMIV	GCCGGC	2 cut(s)	143, 228
NlaIII	CATG	3 cut(s)	115, 223, 453
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	460, 466
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	453
PdiI	GCCGGC	2 cut(s)	145, 230
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	257, 260, 369
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	234, 437
SatI	GCNGC	3 cut(s)	256, 259, 368
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	3 cut(s)	102, 180, 297
SetI	ASST	5 cut(s)	15, 35, 87, 320, 432
SfcI	CTRYAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	179, 233
SmoI	CTYRAG	2 cut(s)	179, 233
SsiI	CCGC	5 cut(s)	22, 256, 308, 367, 393
SspMI	CTAG	2 cut(s)	60, 356
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	59, 219
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	4 cut(s)	29, 165, 267, 273
TauI	GCSGC	2 cut(s)	258, 370
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	234, 437
Tru9I	TTAA	2 cut(s)	234, 437
TscAI	CASTG	3 cut(s)	124, 463, 469
TseFI	GTSAC	2 cut(s)	460, 466
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	2 cut(s)	460, 466
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	124, 463, 469
Vha464I	CTTAAG	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	59
XspI	CTAG	2 cut(s)	60, 356
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.