Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

37071450 .. 37071914

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAGACAGTATAAGTGTGAGGGAGTCAACGGTGGTGAAGCCAGCCAGTGAGACGCCTAGGCAGTCTTTGTGGAAGTCCAACTTGGACATGATCAGTTCAAATTATCATACTCCCTCTGTCTATATCTACAAGCCAAAAGACAGTTTCTTTGACCCTCGTGTGCTCAAGGACGCGCTCAGCAAGGCCCTCGTCCCCTTCTACCCCTTGGCCGGCCGTCTGAGGCGAAACAACGACGACAAGAATGATCATATTGGAATCAACTGCAATGCTGAGGGCGTCTTGTTTGTTGTGGCCGATAGCAGCTCCTCCGCCCATGATTACGCCGATTTGAAGACCTGTCTTGAGTCAGGAAGATGGCTCATTCCCGCGGTAACATACCTGAACCGGTGGAGTTGCACTTGGTATTGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

139

Amino Acids

15.75

Weight (kDa)

8.44

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 112	2.7e-26	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	176, 371
AciI	CCGC	3 cut(s)	312, 369, 371
AcoI	YGGCCR	3 cut(s)	210, 214, 294
AcyI	GRCGYC	2 cut(s)	56, 279
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	102, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	4 cut(s)	186, 210, 214, 294
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AsiGI	ACCGGT	1 cut(s)	387
AspA2I	CCTAGG	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	59
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BclI	TGATCA	2 cut(s)	93, 247
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	304
BlnI	CCTAGG	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	152, 365
BsaHI	GRCGYC	2 cut(s)	56, 279
BsaJI	CCNNGG	3 cut(s)	59, 207, 369
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	2 cut(s)	212, 387
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	59, 207, 369
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	3 cut(s)	193, 212, 264
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	298
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	315
Bsh1236I	CGCG	2 cut(s)	176, 371
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	4 cut(s)	188, 212, 216, 296
BshTI	ACCGGT	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	213, 388
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	4 cut(s)	188, 212, 216, 296
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	93, 247
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	3 cut(s)	312, 369, 371
BspANI	GGCC	4 cut(s)	188, 212, 216, 296
BspCNI	CTCAG	3 cut(s)	192, 213, 265
BspFNI	CGCG	2 cut(s)	176, 371
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	2 cut(s)	212, 387
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	2 cut(s)	212, 387
BssECI	CCNNGG	3 cut(s)	59, 207, 369
BssMI	GATC	2 cut(s)	93, 247
BssNI	GRCGYC	2 cut(s)	56, 279
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	59, 207
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	11, 34, 146
BstACI	GRCGYC	2 cut(s)	56, 279
BstC8I	GCNNGC	2 cut(s)	45, 214
BstDEI	CTNAG	3 cut(s)	179, 221, 273
BstDSI	CCRYGG	1 cut(s)	369
BstFNI	CGCG	2 cut(s)	176, 371
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	96, 250
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	93, 247
BstMCI	CGRYCG	1 cut(s)	217
BstUI	CGCG	2 cut(s)	176, 371
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	341
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	4 cut(s)	188, 212, 216, 296
BtgI	CCRYGG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	45, 214
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	2 cut(s)	212, 387
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	372
CseI	GACGC	3 cut(s)	64, 182, 268
CspAI	ACCGGT	1 cut(s)	387
CviAII	CATG	2 cut(s)	91, 317
CviJI	RGCY	9 cut(s)	43, 47, 136, 188, 212, 216, 296, 306, 361
CviKI_1	RGCY	9 cut(s)	43, 47, 136, 188, 212, 216, 296, 306, 361
DdeI	CTNAG	3 cut(s)	179, 221, 273
DpnI	GATC	2 cut(s)	95, 249
DpnII	GATC	2 cut(s)	93, 247
EaeI	YGGCCR	3 cut(s)	210, 214, 294
EagI	CGGCCG	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	59, 207
Eco52I	CGGCCG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	59, 207
ErhI	CCWWGG	2 cut(s)	59, 207
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	94, 320
FaiI	YATR	7 cut(s)	14, 92, 111, 126, 252, 318, 379
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	90, 316
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	2 cut(s)	93, 247
Fnu4HI	GCNGC	1 cut(s)	304
FseI	GGCCGGCC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	188, 212, 216, 296
HapII	CCGG	2 cut(s)	213, 388
HgaI	GACGC	3 cut(s)	64, 182, 268
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	2 cut(s)	56, 279
Hin1II	CATG	2 cut(s)	94, 320
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	26, 258, 347
HpaII	CCGG	2 cut(s)	213, 388
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	344, 351
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	11, 34, 146
HpyCH4V	TGCA	2 cut(s)	267, 399
HpyF3I	CTNAG	3 cut(s)	179, 221, 273
Hsp92I	GRCGYC	2 cut(s)	56, 279
Hsp92II	CATG	2 cut(s)	94, 320
HspAI	GCGC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Ksp22I	TGATCA	2 cut(s)	93, 247
KspI	CCGCGG	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	93, 247
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	7 cut(s)	57, 61, 226, 336, 352, 395, 401
Lsp1109I	GCAGC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	95, 249
MboI	GATC	2 cut(s)	93, 247
MboII	GAAGA	2 cut(s)	346, 366
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	35, 356
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	15, 127, 168, 200, 216, 268, 319
MroNI	GCCGGC	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	213, 388
MvnI	CGCG	2 cut(s)	176, 371
NaeI	GCCGGC	1 cut(s)	214
NdeII	GATC	2 cut(s)	93, 247
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	94, 320
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	34, 355
PpsI	GAGTC	2 cut(s)	34, 355
PspPI	GGNCC	1 cut(s)	187
RigI	GGCCGGCC	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	372
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	93, 247
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	35, 356
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	308, 341, 384
Sfr303I	CCGCGG	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	167, 344
SmoI	CTYRAG	2 cut(s)	167, 344
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	312, 369, 371
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	59, 207
TaaI	ACNGT	3 cut(s)	11, 34, 146
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	303
TspRI	CASTG	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.