Rmu_sc0005460.1_g000009

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005460.1
Physical Location & Seq
Forward (+)
59683 .. 60453
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005460.1_g000009.1.cds

Sequence Viewer

Length: 252 bp
atgagaatatttattcagtccaaaacttctttttacaaggcggaaagcagctccgtcgtggatgactttggggacttttctcccaccctcgagttccggcggctcatccccaccgttgattataccgctgggatatcctcttatcctctcctggtcttacagtcgcaaaagaccaacggcgacggcaaaattgccgatgtcgttggtggcgtcgccattgctatttgcgacggcaatcacgccgtcgcatga

Protein Analysis

83

Amino Acids

8.9

Weight (kDa)

5.03

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 41, 100, 126
AcyI GRCGYC 1 cut(s) 210
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 60
BceAI ACGGC 4 cut(s) 193, 199, 227, 247
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 1 cut(s) 152
BisI GCNGC 2 cut(s) 49, 101
BlsI GCNGC 2 cut(s) 50, 102
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 67, 105
BseMI GCAATG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 89
BspACI CCGC 3 cut(s) 41, 100, 126
BsrDI GCAATG 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 115, 162
BstACI GRCGYC 1 cut(s) 210
BstF5I GGATG 2 cut(s) 67, 105
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 67, 105
CseI GACGC 1 cut(s) 199
CviAII CATG 1 cut(s) 249
CviJI RGCY 2 cut(s) 51, 103
CviKI_1 RGCY 2 cut(s) 51, 103
EciI GGCGGA 1 cut(s) 56
Eco32I GATATC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 135
FaeI CATG 1 cut(s) 252
FaiI YATR 2 cut(s) 123, 250
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 49, 101
FokI GGATG 2 cut(s) 74, 92
Fsp4HI GCNGC 2 cut(s) 49, 101
GluI GCNGC 2 cut(s) 49, 101
GsaI CCCAGC 1 cut(s) 132
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 252
HpaII CCGG 1 cut(s) 97
Hpy99I CGWCG 5 cut(s) 59, 185, 215, 233, 248
HpyCH4III ACNGT 2 cut(s) 115, 162
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 252
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 110, 114, 137, 164
Lsp1109I GCAGC 1 cut(s) 60
MluCI AATT 1 cut(s) 189
MnlI CCTC 3 cut(s) 98, 148, 156
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NlaIII CATG 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PkrI GCNGC 2 cut(s) 50, 102
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 89
SatI GCNGC 2 cut(s) 49, 101
ScrFI CCNGG 1 cut(s) 152
SetI ASST 1 cut(s) 53
Sfr274I CTCGAG 1 cut(s) 89
SgeI CNNG 8 cut(s) 49, 70, 101, 103, 109, 141, 163, 164
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 41, 100, 126
SspI AATATT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 115, 162
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 189
TauI GCSGC 1 cut(s) 103
TseI GCWGC 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.