Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

17936579 .. 17937049

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAGGAACAGATTGCAACCCCCCACTCCCACCTGGTTACTTTGGTAATGTGATTTTCAGAGCCGTAGCAACAGCCTTAGCGGGGGATCTCATATCAAAACCATTATCGTATGCCGCAAGCTGCATTCACAATGCTGTGGTGCGTATGGACGATGATTATGTTCGATCGGAACTTGACTATCTTGAACTTCAGCAGCGTCATCAGGATCTGTCAAGCCTTGCTCATGGGACTCATGTTATGTGCCCTAATCTTGGGATAACTAGCTGGTTTACGCTACCCCTCTATGATGCTGATTTTGGGTGGGGGCGTCCAAGTTTCATGGGACGTGCTGGAATTCCAAGTGAAGGGAAGGGCTACATGCAATCTAGTGCAACTGATGATGGGAGTTTGTCACTGTCCATTAGTCTGCAATCTCAGCATATGATATCATTTTCCAAGAATGTCTTGCTTAATCACCCTCGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

156

Amino Acids

17.1

Weight (kDa)

5.55

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	7 - 148	1.5e-27	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 117
AclWI	GGATC	2 cut(s)	96, 216
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	310
AfiI	CCNNNNNNNGG	3 cut(s)	84, 254, 347
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	123, 267
AluI	AGCT	2 cut(s)	123, 267
AlwI	GGATC	2 cut(s)	96, 216
AlwNI	CAGNNNCTG	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	123, 196
ApoI	RAATTY	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	110, 208
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	2 cut(s)	264, 369
BisI	GCNGC	3 cut(s)	117, 124, 197
BlsI	GCNGC	3 cut(s)	118, 125, 198
Bme1390I	CCNGG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 254, 347
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	84, 254, 347
BseMII	CTCAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	110, 208
Bsh1285I	CGRYCG	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	244, 339
BslI	CCNNNNNNNGG	3 cut(s)	84, 254, 347
BsmFI	GGGAC	2 cut(s)	244, 339
BsmI	GAATGC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	88, 167, 208
BspACI	CCGC	2 cut(s)	83, 117
BspCNI	CTCAG	1 cut(s)	430
BspPI	GGATC	2 cut(s)	96, 216
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	88, 167, 208
BssNI	GRCGYC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	79, 417
BstF5I	GGATG	1 cut(s)	471
BstKTI	GATC	3 cut(s)	91, 170, 211
BstMBI	GATC	3 cut(s)	88, 167, 208
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	110, 208
BstX2I	RGATCY	2 cut(s)	88, 208
BstYI	RGATCY	2 cut(s)	88, 208
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	211
CseI	GACGC	2 cut(s)	188, 299
CsiI	ACCWGGT	1 cut(s)	34
CviAII	CATG	4 cut(s)	227, 236, 322, 361
CviJI	RGCY	6 cut(s)	65, 77, 123, 219, 267, 357
CviKI_1	RGCY	6 cut(s)	65, 77, 123, 219, 267, 357
DdeI	CTNAG	2 cut(s)	79, 417
DpnI	GATC	3 cut(s)	90, 169, 210
DpnII	GATC	3 cut(s)	88, 167, 208
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	429
FaeI	CATG	4 cut(s)	230, 239, 325, 364
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	2 cut(s)	244, 339
FatI	CATG	4 cut(s)	226, 235, 321, 360
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	117, 124, 197
Fsp4HI	GCNGC	3 cut(s)	117, 124, 197
FspBI	CTAG	2 cut(s)	264, 369
GluI	GCNGC	3 cut(s)	117, 124, 197
HgaI	GACGC	2 cut(s)	188, 299
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	230, 239, 325, 364
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	62, 172, 465
Hpy188III	TCNNGA	2 cut(s)	185, 206
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	341, 346
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	5 cut(s)	18, 126, 364, 374, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	2 cut(s)	79, 417
HpySE526I	ACGT	1 cut(s)	328
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	230, 239, 325, 364
Kzo9I	GATC	3 cut(s)	88, 167, 208
LpnPI	CCDG	5 cut(s)	21, 48, 191, 253, 318
Lsp1109I	GCAGC	2 cut(s)	110, 208
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	2 cut(s)	264, 369
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	38, 393
MalI	GATC	3 cut(s)	90, 169, 210
MboI	GATC	3 cut(s)	88, 167, 208
MflI	RGATCY	2 cut(s)	88, 208
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	2 cut(s)	293, 471
MseI	TTAA	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	3 cut(s)	88, 167, 208
NlaIII	CATG	4 cut(s)	230, 239, 325, 364
NmuCI	GTSAC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	364
PctI	GAATGC	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	118, 125, 198
Ple19I	CGATCG	1 cut(s)	170
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	88, 208
PvuI	CGATCG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	117, 124, 197
Sau3AI	GATC	3 cut(s)	88, 167, 208
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	37, 125, 269, 331
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	83, 117
SspMI	CTAG	2 cut(s)	264, 369
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	336
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	2 cut(s)	123, 196
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	2 cut(s)	264, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.