Rh5CG476400

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
66571848 .. 66572603
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG476400.1

Sequence Viewer

Length: 756 bp
ATGGCGGTCAACGTCAGTGTTATTGAGTCGACAGTGGTGAGGCCAGCGGCGGAGACACCTCGACAGTCGTTGTGGCTCTCGAACATGGACTTGGTGATGTCCAGCACTCACACTCCCAGTATTTATATCTACAAGCCAAAAGTCGATGCTGGTGCAGACAAGGACAGTAATTTCTTTGACAGGCATGTCTTGAAGGACGCGCTCGGCAAGGCCCTTATCCCTTTTTACCCCATGGCCGGCCGCCTGAAGCGAAAAATGGATGAGGGCCAGAAGGGTCGTCTCGAAGTAGATTGCAATGCGGAGGGGGCCTTGTTTGTTGTGGCCCATAGCAGCTCTTGCATCGATGACTTCGGCGATTTTGCACCCACTCCGGACTTCGGGAGAGGGAGAGGGCTCCTCCCTACCGTTGACTACTCCGGCGGGATATCTTCTTATCCTCTGTTGCTGGAACAGATCACATATTTAAAATGCGGTGGAGTGGCACTTGGTGTTCGCATAGACCATCACTTAGCAGATGGATTTTCTGCTCTTCACTTTATAAATACATGGTCTGATATGGCTCGTGGTCTGGACCTTGCAATCCCACCAACGATCGACAGGACATTACTTCGTGCTCGAGACCCACCTCGAACTTTACTCAACCACAATCACCACATTGTATACCAACCTCCTAATGACCACGATCAACATGAAAGCACCGGGGCAGAAACAGTAGTCTCGGTTCTTACATTACTAGGGAGCAGCTCAACATCTTGA

Protein Analysis

251

Amino Acids

27.42

Weight (kDa)

5.96

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 233 2.6e-52 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AasI GACNNNNNNGTC 1 cut(s) 185
AccI GTMKAC 2 cut(s) 29, 660
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 7 cut(s) 5, 47, 50, 241, 299, 420, 471
AcoI YGGCCR 2 cut(s) 234, 238
AcuI CTGAAG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 488
AfiI CCNNNNNNNGG 2 cut(s) 236, 377
AgsI TTSAA 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 333, 744
AluI AGCT 2 cut(s) 333, 744
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 4 cut(s) 47, 284, 612, 721
Ama87I CYCGRG 1 cut(s) 615
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 7 cut(s) 41, 210, 234, 238, 265, 306, 321
ApeKI GCWGC 2 cut(s) 330, 741
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 5 cut(s) 211, 265, 306, 322, 571
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 3 cut(s) 49, 106, 641
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 342
BccI CCATC 2 cut(s) 509, 510
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 4 cut(s) 47, 284, 612, 721
BfaI CTAG 1 cut(s) 734
BisI GCNGC 4 cut(s) 48, 241, 331, 742
BlsI GCNGC 4 cut(s) 49, 242, 332, 743
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 5 cut(s) 211, 265, 306, 322, 571
BmiI GGNNCC 2 cut(s) 307, 395
BmrFI CCNGG 1 cut(s) 700
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 136, 348
BmuI ACTGGG 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 381, 413
BpuMI CCSGG 1 cut(s) 700
Bsa29I ATCGAT 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 231, 699
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 377
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 301
BseAI TCCGGA 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 231, 699
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 236, 377
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 386
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 241, 594
BshFI GGCC 7 cut(s) 43, 212, 236, 240, 267, 308, 323
BshVI ATCGAT 1 cut(s) 342
BsiEI CGRYCG 2 cut(s) 241, 594
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 4 cut(s) 237, 371, 417, 699
BslI CCNNNNNNNGG 2 cut(s) 236, 377
BsmAI GTCTC 4 cut(s) 47, 284, 612, 721
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 7 cut(s) 43, 212, 236, 240, 267, 308, 323
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 2 cut(s) 396, 616
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 3 cut(s) 453, 591, 682
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 7 cut(s) 5, 47, 50, 241, 299, 420, 471
BspANI GGCC 7 cut(s) 43, 212, 236, 240, 267, 308, 323
BspDI ATCGAT 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 307, 395
BspQI GCTCTTC 1 cut(s) 534
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 231, 699
BssMI GATC 3 cut(s) 453, 591, 682
BssNAI GTATAC 1 cut(s) 661
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 561
Bst4CI ACNGT 5 cut(s) 34, 66, 167, 406, 712
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 45, 238
BstDEI CTNAG 1 cut(s) 508
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 456, 594, 685
BstMAI GTCTC 4 cut(s) 47, 284, 612, 721
BstMBI GATC 3 cut(s) 453, 591, 682
BstMCI CGRYCG 2 cut(s) 241, 594
BstMWI GCNNNNNNNGC 2 cut(s) 305, 336
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 698
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 342
BstZ17I GTATAC 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 7 cut(s) 43, 212, 236, 240, 267, 308, 323
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 22, 39
Cac8I GCNNGC 2 cut(s) 45, 238
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 5 cut(s) 211, 265, 306, 322, 571
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 206
CviAII CATG 5 cut(s) 85, 185, 232, 546, 689
DdeI CTNAG 1 cut(s) 508
DpnI GATC 3 cut(s) 455, 593, 684
DpnII GATC 3 cut(s) 453, 591, 682
DraI TTTAAA 1 cut(s) 465
DraIII CACNNNGTG 1 cut(s) 488
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 2 cut(s) 234, 238
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 571
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 615
EcoO109I RGGNCCY 2 cut(s) 211, 306
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 5 cut(s) 88, 188, 235, 549, 692
FatI CATG 5 cut(s) 84, 184, 231, 545, 688
FauI CCCGC 1 cut(s) 413
FblI GTMKAC 2 cut(s) 29, 660
Fnu4HI GCNGC 4 cut(s) 48, 241, 331, 742
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 396
FseI GGCCGGCC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 48, 241, 331, 742
FspBI CTAG 1 cut(s) 734
GlaI GCGC 1 cut(s) 201
GluI GCNGC 4 cut(s) 48, 241, 331, 742
HaeIII GGCC 7 cut(s) 43, 212, 236, 240, 267, 308, 323
HapII CCGG 4 cut(s) 237, 371, 417, 699
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 202
Hin1II CATG 5 cut(s) 88, 188, 235, 549, 692
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 3 cut(s) 10, 30, 409
HindII GTYRAC 3 cut(s) 10, 30, 409
HinfI GANTC 1 cut(s) 26
HpaII CCGG 4 cut(s) 237, 371, 417, 699
HphI GGTGA 3 cut(s) 49, 106, 641
Hpy166II GTNNAC 4 cut(s) 10, 30, 409, 661
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 8 cut(s) 79, 190, 281, 371, 379, 569, 617, 753
Hpy8I GTNNAC 4 cut(s) 10, 30, 409, 661
HpyAV CCTTC 2 cut(s) 187, 265
HpyCH4III ACNGT 5 cut(s) 34, 66, 167, 406, 712
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 5 cut(s) 155, 294, 339, 362, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 336
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 5 cut(s) 88, 188, 235, 549, 692
HspAI GCGC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 370
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 453, 591, 682
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 2 cut(s) 399, 738
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 136, 348
MaeI CTAG 1 cut(s) 734
MaeII ACGT 1 cut(s) 12
MalI GATC 3 cut(s) 455, 593, 684
MboI GATC 3 cut(s) 453, 591, 682
MboII GAAGA 2 cut(s) 420, 521
MhlI GDGCHC 2 cut(s) 396, 616
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 4 cut(s) 237, 371, 417, 699
MspR9I CCNGG 1 cut(s) 700
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 305, 336
NaeI GCCGGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 700
NcoI CCATGG 1 cut(s) 231
NdeII GATC 3 cut(s) 453, 591, 682
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 5 cut(s) 88, 188, 235, 549, 692
NlaIV GGNNCC 2 cut(s) 307, 395
NmeAIII GCCGAG 1 cut(s) 183
NspI RCATGY 1 cut(s) 188
PaeR7I CTCGAG 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 238
PkrI GCNGC 4 cut(s) 49, 242, 332, 743
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 307, 395
PspPI GGNCC 5 cut(s) 211, 265, 306, 322, 571
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
PvuI CGATCG 1 cut(s) 594
RigI GGCCGGCC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 4 cut(s) 48, 241, 331, 742
Sau3AI GATC 3 cut(s) 453, 591, 682
Sau96I GGNCC 5 cut(s) 211, 265, 306, 322, 571
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 2 cut(s) 396, 616
SetI ASST 7 cut(s) 15, 61, 335, 576, 628, 670, 746
SfaNI GCATC 2 cut(s) 136, 348
Sfr274I CTCGAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
Sse9I AATT 1 cut(s) 169
SsiI CCGC 7 cut(s) 5, 47, 50, 241, 299, 420, 471
SspMI CTAG 1 cut(s) 734
StyD4I CCNGG 1 cut(s) 698
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 34, 66, 167, 406, 712
TaiI ACGT 1 cut(s) 15
TaqI TCGA 9 cut(s) 29, 61, 80, 144, 282, 342, 594, 616, 628
TasI AATT 1 cut(s) 169
TauI GCSGC 2 cut(s) 50, 243
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 22, 39
TseI GCWGC 2 cut(s) 330, 741
TspDTI ATGAA 1 cut(s) 705
TspRI CASTG 2 cut(s) 22, 39
VpaK11BI GGWCC 1 cut(s) 571
XceI RCATGY 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 615
XmiI GTMKAC 2 cut(s) 29, 660
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.