Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

53044047 .. 53044697

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAACACCGAGTGGCAGATGGATATTCTAGTCTCCATTTCATAAATACATGGTCAGATATCGCTCGTGGCCTCGACCTCACAATTCCACCATTCATCGACCGCACATTCTTACGTGCTCGAGATCCGCCCCGGCCTGCATTCCCCCACATCGAATACCAACCCGGTCCGTCTATGAAAACTCCTCTTGATGCTGCTCAGATGACATCAACAATGGTCTCCATTTTCAAGCTGACACCAGACCAGCTCAACACCTTGAAAGCCAAGTTTAAACAAGATGGGAACAACACCATCAAGTTCAGCTCATATGAAATGTTGGCAGGTCATATATGGCGATGTGCATGCAAGGCACGCCGACTCCTCGATGATCAAGAGACCAAACTGCATGTCGCCACTGATGGAAGGTCCAGACTGAAGCCTTCACTCCCTCCGGGTTACTTTGGCAACGTGATTTTCTCAGCCGGGCCATTCGCTACAGCAGGGGATCTCCAATCTAAACCGATTTGGTATGCCTCAAGCTGTATACAAAATACTTTGGCACGTATGGACGATGAGTATCTTAGATCAGCAATCGACTATCTTGAGCTTCAGCAGGATCTATCGGCACTTGTTCGCGGGGCTCATAGTTTTCGCTGCCAAAAATGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

216

Amino Acids

24.4

Weight (kDa)

8.88

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 201	8.2e-41	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	523
AccII	CGCG	1 cut(s)	615
AciI	CCGC	3 cut(s)	103, 128, 615
AclWI	GGATC	3 cut(s)	119, 492, 603
AcuI	CTGAAG	2 cut(s)	434, 572
AdeI	CACNNNGTG	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	2 cut(s)	229, 259
AluBI	AGCT	5 cut(s)	232, 247, 303, 519, 586
AluI	AGCT	5 cut(s)	232, 247, 303, 519, 586
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	38, 223, 368
AlwI	GGATC	3 cut(s)	119, 492, 603
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	3 cut(s)	70, 134, 464
ApeKI	GCWGC	2 cut(s)	194, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspS9I	GGNCC	3 cut(s)	167, 405, 464
AsuC2I	CCSGG	4 cut(s)	133, 165, 432, 463
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	167, 405
BanII	GRGCYC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	181, 620
BccI	CCATC	4 cut(s)	14, 272, 299, 392
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	4 cut(s)	133, 165, 432, 463
BcoDI	GTCTC	3 cut(s)	38, 223, 368
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	2 cut(s)	195, 634
BlsI	GCNGC	2 cut(s)	196, 635
Bme1390I	CCNGG	4 cut(s)	133, 165, 432, 463
Bme18I	GGWCC	2 cut(s)	167, 405
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	167, 405, 464
BmrFI	CCNGG	4 cut(s)	133, 165, 432, 463
BmsI	GCATC	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	499, 602
BpuMI	CCSGG	4 cut(s)	133, 165, 432, 463
BsaAI	YACGTR	2 cut(s)	116, 542
BsaBI	GATNNNNATC	1 cut(s)	555
BsaI	GGTCTC	2 cut(s)	223, 368
BsaJI	CCNNGG	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse8I	GATNNNNATC	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	212, 471
BseRI	GAGGAG	2 cut(s)	174, 350
BseXI	GCAGC	2 cut(s)	181, 620
Bsh1236I	CGCG	1 cut(s)	615
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	72, 136, 466
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	133, 165, 431, 462
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	3 cut(s)	38, 223, 368
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	72, 136, 466
Bso31I	GGTCTC	2 cut(s)	223, 368
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	121, 622
Bsp143I	GATC	5 cut(s)	124, 367, 484, 563, 595
BspACI	CCGC	3 cut(s)	103, 128, 615
BspANI	GGCC	3 cut(s)	72, 136, 466
BspCNI	CTCAG	2 cut(s)	211, 470
BspFNI	CGCG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	119, 492, 603
BspTNI	GGTCTC	2 cut(s)	223, 368
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	5 cut(s)	124, 367, 484, 563, 595
BssNAI	GTATAC	1 cut(s)	524
BssSI	CACGAG	1 cut(s)	66
Bst1107I	GTATAC	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	66
BstBAI	YACGTR	2 cut(s)	116, 542
BstC8I	GCNNGC	3 cut(s)	138, 343, 352
BstDEI	CTNAG	3 cut(s)	198, 457, 560
BstFNI	CGCG	1 cut(s)	615
BstKTI	GATC	5 cut(s)	127, 370, 487, 566, 598
BstMAI	GTCTC	3 cut(s)	38, 223, 368
BstMBI	GATC	5 cut(s)	124, 367, 484, 563, 595
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 351
BstNSI	RCATGY	2 cut(s)	345, 389
BstSCI	CCNGG	4 cut(s)	131, 163, 430, 461
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	2 cut(s)	181, 620
BstX2I	RGATCY	3 cut(s)	124, 484, 595
BstYI	RGATCY	3 cut(s)	124, 484, 595
BstZ17I	GTATAC	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	72, 136, 466
BtgZI	GCGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	138, 343, 352
Cfr13I	GGNCC	3 cut(s)	167, 405, 464
CpoI	CGGWCCG	1 cut(s)	167
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	3 cut(s)	51, 342, 386
DdeI	CTNAG	3 cut(s)	198, 457, 560
DpnI	GATC	5 cut(s)	126, 369, 486, 565, 597
DpnII	GATC	5 cut(s)	124, 367, 484, 563, 595
DraI	TTTAAA	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	2 cut(s)	223, 368
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	167, 405
Eco57I	CTGAAG	2 cut(s)	434, 572
Eco88I	CYCGRG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	3 cut(s)	54, 345, 389
FatI	CATG	3 cut(s)	50, 341, 385
FauI	CCCGC	1 cut(s)	608
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	195, 634
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	195, 634
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	2 cut(s)	195, 634
HaeIII	GGCC	3 cut(s)	72, 136, 466
HapII	CCGG	4 cut(s)	133, 165, 431, 462
Hin1II	CATG	3 cut(s)	54, 345, 389
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	4 cut(s)	133, 165, 431, 462
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	58, 201
Hpy188III	TCNNGA	5 cut(s)	122, 188, 371, 408, 581
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	396, 429
HpyCH4IV	ACGT	3 cut(s)	115, 447, 541
HpyCH4V	TGCA	4 cut(s)	140, 341, 345, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 351
HpyF3I	CTNAG	3 cut(s)	198, 457, 560
HpySE526I	ACGT	3 cut(s)	115, 447, 541
Hsp92II	CATG	3 cut(s)	54, 345, 389
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	124, 367, 484, 563, 595
Lsp1109I	GCAGC	2 cut(s)	181, 620
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	3 cut(s)	115, 447, 541
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	5 cut(s)	126, 369, 486, 565, 597
MboI	GATC	5 cut(s)	124, 367, 484, 563, 595
MflI	RGATCY	3 cut(s)	124, 484, 595
MhlI	GDGCHC	2 cut(s)	121, 622
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	6 cut(s)	83, 89, 195, 371, 438, 523
MseI	TTAA	1 cut(s)	270
MspI	CCGG	4 cut(s)	133, 165, 431, 462
MspR9I	CCNGG	4 cut(s)	133, 165, 432, 463
MssI	GTTTAAAC	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	2 cut(s)	347, 351
NciI	CCSGG	4 cut(s)	133, 165, 432, 463
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	5 cut(s)	124, 367, 484, 563, 595
NlaIII	CATG	3 cut(s)	54, 345, 389
NspI	RCATGY	2 cut(s)	345, 389
PaeI	GCATGC	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	196, 635
PleI	GAGTC	1 cut(s)	351
PmeI	GTTTAAAC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	2 cut(s)	116, 542
PspPI	GGNCC	3 cut(s)	167, 405, 464
PsuI	RGATCY	3 cut(s)	124, 484, 595
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	195, 634
Sau3AI	GATC	5 cut(s)	124, 367, 484, 563, 595
Sau96I	GGNCC	3 cut(s)	167, 405, 464
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	4 cut(s)	133, 165, 432, 463
SduI	GDGCHC	2 cut(s)	121, 622
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	167, 405
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	120, 514, 581
SmoI	CTYRAG	3 cut(s)	120, 514, 581
SphI	GCATGC	1 cut(s)	345
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	103, 128, 615
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	131, 163, 430, 461
TaiI	ACGT	3 cut(s)	118, 450, 544
TaqI	TCGA	6 cut(s)	75, 99, 121, 153, 363, 573
TasI	AATT	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	2 cut(s)	194, 633
TspDTI	ATGAA	4 cut(s)	31, 85, 191, 324
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	167, 405
XceI	RCATGY	2 cut(s)	345, 389
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.