pycom09g14850

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
14650786 .. 14651688
903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14850.1

Sequence Viewer

Length: 903 bp
ATGCAGGTCACATACTTCAAATGTGGTGGAGTGTCGCTTGGGGTCGGCCTGGAACATCGAGTGGCAGATGGGTGTTCAGGTCTCCACTTTGTAAATACATGGTCTGATATCGCCCGCGGACTTGACCTTACAATCCCACCATTCATCGACAGGACGTTACTTTGTGCCCGAGACCCACCTCAGCCAACATTCGACCCCGTTGAATACCAGCCTGATCCGCCCTTAAAAATTCCTCCGCCTTGCACAAAAGATGGTGATGCCGAGAGTACAACAGTCTCCATTTTTAGATTGACGCGGGAGCAGCTTAGCGTCTTGAAAGCCAAGTCTAAGGAAGAAGGGAACACAATCAACTACAGCACATATGAGATGTTGGCAGGCCATGTTTGGAGATGTGCATCCAAGGCACGTAATCTTCCCGATGATCAAGTGACCAAACTGCATATTGCGGTTGATGGACGGTCCAGACTGCAACCCCCGCTCCCACTTGGTTTCTTTGGCAATGTGGTTTTCGCAGGCGCACCATTAGCTACAGTGGGTGATCTCAAATCAAAACCAACATGGTATGCTGCCAGTCGTATACATGATATTGTGGTGCGTATGAACAACGATTACCTTAGGTCAGCTCTTGACTATCTTGAGGTTCAGCCTGATCTGTCGGCCCTTGTTCGCGGTGCTCATACTTTTCAGTGCCCGAAACTTGGGATAACTAGTTGGGTGAGGTTGCCGATATATGAAGCAGATTTTGGCTGGGGTGGACCTATGTTCATGGGACCTGGTGGAATTGGATATGAAGGTTTGTCGTTTGTGTTACCAAGTCCAACAAGTGATGGGAGTTTATCAGTGGCCATTTCCCTGAAGTCCGACCATATGGAATCATTTGCCAAGTTGTTGTATGACATATGA

Protein Analysis

301

Amino Acids

32.87

Weight (kDa)

5.97

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 295 4.7e-64 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48930
fragaria_vesca FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 577
AccII CGCG 3 cut(s) 117, 295, 669
AciI CCGC 8 cut(s) 115, 117, 218, 236, 295, 446, 476, 669
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 875
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 3 cut(s) 19, 203, 316
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 2 cut(s) 48, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AluBI AGCT 3 cut(s) 304, 527, 623
AluI AGCT 3 cut(s) 304, 527, 623
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 3 cut(s) 86, 165, 280
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 4 cut(s) 46, 376, 657, 843
ApeKI GCWGC 2 cut(s) 301, 566
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 459, 658, 755, 770
AsuHPI GGTGA 3 cut(s) 266, 548, 727
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 3 cut(s) 459, 755, 770
AxyI CCTNAGG 1 cut(s) 614
BaeGI GKGCMC 2 cut(s) 169, 692
BalI TGGCCA 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 676
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 313, 553
BccI CCATC 4 cut(s) 62, 245, 446, 821
BciT130I CCWGG 2 cut(s) 50, 774
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 86, 165, 280
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 352, 528
BisI GCNGC 2 cut(s) 302, 567
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 2 cut(s) 303, 568
Bme1390I CCNGG 2 cut(s) 50, 774
Bme18I GGWCC 3 cut(s) 459, 755, 770
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 4 cut(s) 459, 658, 755, 770
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 2 cut(s) 50, 774
BmsI GCATC 2 cut(s) 247, 404
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 656
BsaAI YACGTR 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 86, 165
BsaJI CCNNGG 2 cut(s) 115, 399
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 570
Bse21I CCTNAGG 1 cut(s) 614
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 394
BseBI CCWGG 2 cut(s) 50, 774
BseDI CCNNGG 2 cut(s) 115, 399
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 570
BseSI GKGCMC 2 cut(s) 169, 692
BseXI GCAGC 2 cut(s) 313, 553
BseYI CCCAGC 1 cut(s) 747
Bsh1236I CGCG 3 cut(s) 117, 295, 669
BshFI GGCC 4 cut(s) 48, 378, 659, 845
BsiHKAI GWGCWC 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 3 cut(s) 86, 165, 280
BsmFI GGGAC 1 cut(s) 783
BsnI GGCC 4 cut(s) 48, 378, 659, 845
Bso31I GGTCTC 2 cut(s) 86, 165
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 169, 676, 692
Bsp143I GATC 4 cut(s) 214, 421, 538, 649
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 8 cut(s) 115, 117, 218, 236, 295, 446, 476, 669
BspANI GGCC 4 cut(s) 48, 378, 659, 845
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 3 cut(s) 117, 295, 669
BspLI GGNNCC 1 cut(s) 771
BspPI GGATC 1 cut(s) 209
BspTNI GGTCTC 2 cut(s) 86, 165
BsrBI CCGCTC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 115, 399
BssMI GATC 4 cut(s) 214, 421, 538, 649
BssNAI GTATAC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 399
Bst1107I GTATAC 1 cut(s) 578
Bst2UI CCWGG 2 cut(s) 50, 774
Bst4CI ACNGT 3 cut(s) 274, 459, 532
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 115, 376, 514
BstDEI CTNAG 4 cut(s) 180, 305, 327, 614
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 3 cut(s) 117, 295, 669
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 4 cut(s) 217, 424, 541, 652
BstMAI GTCTC 3 cut(s) 86, 165, 280
BstMBI GATC 4 cut(s) 214, 421, 538, 649
BstMWI GCNNNNNNNGC 5 cut(s) 217, 301, 401, 475, 524
BstNI CCWGG 2 cut(s) 50, 774
BstSCI CCNGG 2 cut(s) 48, 772
BstSFI CTRYAG 2 cut(s) 352, 528
BstSLI GKGCMC 2 cut(s) 169, 692
BstUI CGCG 3 cut(s) 117, 295, 669
BstV1I GCAGC 2 cut(s) 313, 553
BstZ17I GTATAC 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 614
BsuRI GGCC 4 cut(s) 48, 378, 659, 845
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 537, 692, 846
Cac8I GCNNGC 3 cut(s) 115, 376, 514
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 4 cut(s) 459, 658, 755, 770
Cfr42I CCGCGG 1 cut(s) 118
CseI GACGC 2 cut(s) 298, 301
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 5 cut(s) 99, 380, 558, 581, 766
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 4 cut(s) 180, 305, 327, 614
DpnI GATC 4 cut(s) 216, 423, 540, 651
DpnII GATC 4 cut(s) 214, 421, 538, 649
EaeI YGGCCR 1 cut(s) 843
EciI GGCGGA 2 cut(s) 207, 225
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 2 cut(s) 86, 165
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 459, 755, 770
Eco57I CTGAAG 1 cut(s) 875
Eco81I CCTNAGG 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 48, 772
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 5 cut(s) 102, 383, 561, 584, 769
FaqI GGGAC 1 cut(s) 783
FatI CATG 5 cut(s) 98, 379, 557, 580, 765
FauI CCCGC 3 cut(s) 122, 288, 483
FauNDI CATATG 3 cut(s) 361, 867, 899
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 2 cut(s) 302, 567
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 302, 567
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 517
GluI GCNGC 2 cut(s) 302, 567
GsaI CCCAGC 1 cut(s) 751
HaeIII GGCC 4 cut(s) 48, 378, 659, 845
HgaI GACGC 2 cut(s) 298, 301
HhaI GCGC 1 cut(s) 518
Hin1II CATG 5 cut(s) 102, 383, 561, 584, 769
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HinfI GANTC 1 cut(s) 872
HphI GGTGA 3 cut(s) 266, 548, 727
Hpy166II GTNNAC 2 cut(s) 578, 755
Hpy188I TCNGA 2 cut(s) 106, 862
Hpy188III TCNNGA 5 cut(s) 313, 416, 462, 626, 635
Hpy8I GTNNAC 2 cut(s) 578, 755
HpyAV CCTTC 2 cut(s) 329, 785
HpyCH4III ACNGT 3 cut(s) 274, 459, 532
HpyCH4IV ACGT 2 cut(s) 155, 406
HpyCH4V TGCA 5 cut(s) 4, 243, 395, 439, 469
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 301, 401, 475, 524
HpyF3I CTNAG 4 cut(s) 180, 305, 327, 614
HpySE526I ACGT 2 cut(s) 155, 406
Hsp92II CATG 5 cut(s) 102, 383, 561, 584, 769
HspAI GCGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 421
KspI CCGCGG 1 cut(s) 118
Kzo9I GATC 4 cut(s) 214, 421, 538, 649
LmnI GCTCC 2 cut(s) 298, 483
Lsp1109I GCAGC 2 cut(s) 313, 553
LweI GCATC 2 cut(s) 247, 404
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 1 cut(s) 708
MaeII ACGT 2 cut(s) 155, 406
MaeIII GTNAC 4 cut(s) 7, 156, 427, 807
MalI GATC 4 cut(s) 216, 423, 540, 651
MbiI CCGCTC 1 cut(s) 478
MboI GATC 4 cut(s) 214, 421, 538, 649
MboII GAAGA 2 cut(s) 344, 404
MhlI GDGCHC 3 cut(s) 169, 676, 692
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 2 cut(s) 228, 780
MluNI TGGCCA 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 842, 885
MnlI CCTC 4 cut(s) 189, 243, 631, 711
Mox20I TGGCCA 1 cut(s) 845
MscI TGGCCA 1 cut(s) 845
MseI TTAA 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 50, 774
MvaI CCWGG 2 cut(s) 50, 774
MvnI CGCG 3 cut(s) 117, 295, 669
MwoI GCNNNNNNNGC 5 cut(s) 217, 301, 401, 475, 524
NdeI CATATG 3 cut(s) 361, 867, 899
NdeII GATC 4 cut(s) 214, 421, 538, 649
NlaIII CATG 5 cut(s) 102, 383, 561, 584, 769
NlaIV GGNNCC 1 cut(s) 771
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 7, 427
PfeI GAWTC 1 cut(s) 872
PkrI GCNGC 2 cut(s) 303, 568
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 2 cut(s) 48, 772
PspFI CCCAGC 1 cut(s) 747
PspGI CCWGG 2 cut(s) 48, 772
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 4 cut(s) 459, 658, 755, 770
PspPPI RGGWCCY 1 cut(s) 770
PsrI GAACNNNNNNTAC 2 cut(s) 593, 625
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 302, 567
Sau3AI GATC 4 cut(s) 214, 421, 538, 649
Sau96I GGNCC 4 cut(s) 459, 658, 755, 770
ScrFI CCNGG 2 cut(s) 50, 774
SduI GDGCHC 3 cut(s) 169, 676, 692
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 2 cut(s) 247, 404
SfcI CTRYAG 2 cut(s) 352, 528
Sfr303I CCGCGG 1 cut(s) 118
SgrBI CCGCGG 1 cut(s) 118
SinI GGWCC 3 cut(s) 459, 755, 770
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 2 cut(s) 228, 780
SsiI CCGC 8 cut(s) 115, 117, 218, 236, 295, 446, 476, 669
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 48, 772
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 274, 459, 532
TaiI ACGT 2 cut(s) 158, 409
TaqI TCGA 3 cut(s) 58, 147, 192
TasI AATT 2 cut(s) 228, 780
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 3 cut(s) 537, 692, 846
TseFI GTSAC 2 cut(s) 7, 427
TseI GCWGC 2 cut(s) 301, 566
Tsp45I GTSAC 2 cut(s) 7, 427
TspDTI ATGAA 5 cut(s) 133, 614, 747, 754, 804
TspRI CASTG 3 cut(s) 537, 692, 846
VpaK11BI GGWCC 3 cut(s) 459, 755, 770
XapI RAATTY 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 577
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.