Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

72865778 .. 72866377

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCGACCACGACAAAGGAGGAAGACGATGGTATGAATATCAAGTATACCTCATTTGAGGTGTTTTCGGGTCATGTATGGAGATGTGCTTGCAAGGCACGTGAACTAGCTAATGATCAAGAAACCAATTTATACTTTCCTGTGAACGGAAGGACCAAACTGCAACCCCCACTCCCACCTGGTTACTTTGGTAATGTGATTTTCAGAGCCTCAGCAACAGCCATAGCAGGAGATCTCATATCAAAACCATTATCGTATGCTGCAAGCTGCATTCACAATGCTGTGGTGCGTATGGACGATGATTATGTTCGATCGATACTCGACTATCTTGAACTTCAGCAGCGCCATCAGGATTTGTCAAGCCTTGCTCTTGTGAATCATGTTAGGTGCCCTAATCTTGCGATAACTAGCTGGTTTACGCTTCCCCTCTATGATGCTGATTTTGGGTGGGGGCGACCAAGTTTCATGGGACGCGCTGGAATTCCAAGTGAAGGAAAGGCTTACATGATACCAAGTGCAACTAATGATGGTTTATCGCTGTGCATAAATTTGCATTCTCGGTATATGAACACATTTTCCAAGTTGGTTTATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

199

Amino Acids

22.3

Weight (kDa)

6.19

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	8 - 195	1.3e-42	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AccI	GTMKAC	2 cut(s)	5, 47
AccII	CGCG	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	480, 547
AcuI	CTGAAG	1 cut(s)	320
AcvI	CACGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	146, 491
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	178
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AluBI	AGCT	3 cut(s)	110, 267, 411
AluI	AGCT	3 cut(s)	110, 267, 411
ApeKI	GCWGC	3 cut(s)	260, 267, 340
ApoI	RAATTY	2 cut(s)	480, 547
AspLEI	GCGC	2 cut(s)	345, 476
AspS9I	GGNCC	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	387
BbrPI	CACGTG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	247, 254, 352
BccI	CCATC	3 cut(s)	23, 354, 521
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	2 cut(s)	107, 408
BfoI	RGCGCY	1 cut(s)	346
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	3 cut(s)	261, 268, 341
BlsI	GCNGC	3 cut(s)	262, 269, 342
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 491
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	146, 491
BseMII	CTCAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	247, 254, 352
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	146, 491
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	2 cut(s)	270, 553
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	115, 232, 311
BspCNI	CTCAG	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	387
BssMI	GATC	3 cut(s)	115, 232, 311
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	91, 265
BstDEI	CTNAG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	345, 476
BstKTI	GATC	3 cut(s)	118, 235, 314
BstMBI	GATC	3 cut(s)	115, 232, 311
BstMCI	CGRYCG	1 cut(s)	314
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	247, 254, 352
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	314
BsuTUI	ATCGAT	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	91, 265
CfoI	GCGC	2 cut(s)	345, 476
Cfr13I	GGNCC	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	480
CsiI	ACCWGGT	1 cut(s)	178
CviAII	CATG	4 cut(s)	74, 380, 466, 505
CviJI	RGCY	7 cut(s)	110, 209, 221, 267, 363, 411, 500
CviKI_1	RGCY	7 cut(s)	110, 209, 221, 267, 363, 411, 500
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	3 cut(s)	117, 234, 313
DpnII	GATC	3 cut(s)	115, 232, 311
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	320
Eco72I	CACGTG	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	77, 383, 469, 508
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	4 cut(s)	73, 379, 465, 504
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	2 cut(s)	5, 47
Fnu4HI	GCNGC	3 cut(s)	261, 268, 341
Fsp4HI	GCNGC	3 cut(s)	261, 268, 341
FspBI	CTAG	2 cut(s)	107, 408
GlaI	GCGC	2 cut(s)	344, 475
GluI	GCNGC	3 cut(s)	261, 268, 341
HaeII	RGCGCY	1 cut(s)	346
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	2 cut(s)	345, 476
Hin1II	CATG	4 cut(s)	77, 383, 469, 508
Hin6I	GCGC	2 cut(s)	343, 474
HinP1I	GCGC	2 cut(s)	343, 474
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	376
Hpy166II	GTNNAC	5 cut(s)	6, 48, 104, 145, 417
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	119, 329, 350
Hpy8I	GTNNAC	5 cut(s)	6, 48, 104, 145, 417
HpyAV	CCTTC	2 cut(s)	144, 485
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	7 cut(s)	93, 163, 263, 270, 518, 543, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	77, 383, 469, 508
HspAI	GCGC	2 cut(s)	343, 474
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	115, 232, 311
LpnPI	CCDG	7 cut(s)	153, 165, 192, 213, 335, 397, 462
Lsp1109I	GCAGC	3 cut(s)	247, 254, 352
LweI	GCATC	1 cut(s)	424
MabI	ACCWGGT	1 cut(s)	178
MaeI	CTAG	2 cut(s)	107, 408
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	117, 234, 313
MboI	GATC	3 cut(s)	115, 232, 311
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	127, 480, 547
MnlI	CCTC	5 cut(s)	13, 52, 61, 220, 437
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	2 cut(s)	270, 553
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	115, 232, 311
NlaIII	CATG	4 cut(s)	77, 383, 469, 508
NlaIV	GGNNCC	1 cut(s)	389
PctI	GAATGC	2 cut(s)	270, 553
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	262, 269, 342
Ple19I	CGATCG	1 cut(s)	314
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	261, 268, 341
Sau3AI	GATC	3 cut(s)	115, 232, 311
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	8 cut(s)	53, 63, 103, 112, 181, 269, 389, 413
SexAI	ACCWGGT	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	3 cut(s)	127, 480, 547
SspMI	CTAG	2 cut(s)	107, 408
StyD4I	CCNGG	1 cut(s)	178
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	5, 310, 314, 321
TasI	AATT	3 cut(s)	127, 480, 547
TfiI	GAWTC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	260, 267, 340
TspDTI	ATGAA	3 cut(s)	50, 454, 581
TspGWI	ACGGA	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	480, 547
XmiI	GTMKAC	2 cut(s)	5, 47
XspI	CTAG	2 cut(s)	107, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.