Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8204910.1

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 321

Gene Structure 317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8204910.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggcggggcgtctgaagcgcgacgacgacggtcgtatcgagatcgattgtaatggcgagggcgtgctgtttgtcgtagccgagacaagctctgtgatcgatgattttggcgattttgcccccactctcgagctccggaagctcatccccaccgttgattacgccgctgggatttcttcgtatccgctcctggtcttgcagagcagagttgctcaccaatttcgagtgattctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

78

Amino Acids

8.59

Weight (kDa)

4.68

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	3 cut(s)	5, 165, 185
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	90, 133, 142
AluI	AGCT	3 cut(s)	90, 133, 142
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	19, 52
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
Bsa29I	ATCGAT	2 cut(s)	45, 99
BsaHI	GRCGYC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	2 cut(s)	45, 99
BseGI	GGATG	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	34
BshVI	ATCGAT	2 cut(s)	45, 99
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	42, 96
BspACI	CCGC	3 cut(s)	5, 165, 185
BspDI	ATCGAT	2 cut(s)	45, 99
BspEI	TCCGGA	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	187
BssMI	GATC	2 cut(s)	42, 96
BssNI	GRCGYC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	32, 154
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	45, 99
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	42, 96
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 139
BstNI	CCWGG	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	21
Bsu15I	ATCGAT	2 cut(s)	45, 99
BsuI	GTATCC	1 cut(s)	192
BsuTUI	ATCGAT	2 cut(s)	45, 99
BtsCI	GGATG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	21
ClaI	ATCGAT	2 cut(s)	45, 99
CviJI	RGCY	4 cut(s)	80, 90, 133, 142
CviKI_1	RGCY	4 cut(s)	80, 90, 133, 142
DpnI	GATC	2 cut(s)	44, 98
DpnII	GATC	2 cut(s)	42, 96
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	165
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	40, 128, 136
Hpy99I	CGWCG	3 cut(s)	26, 29, 32
HpyCH4III	ACNGT	2 cut(s)	32, 154
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 139
Hsp92I	GRCGYC	1 cut(s)	10
HspAI	GCGC	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	42, 96
LmnI	GCTCC	2 cut(s)	138, 192
LpnPI	CCDG	4 cut(s)	149, 153, 176, 203
MalI	GATC	2 cut(s)	44, 98
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	2 cut(s)	42, 96
MboII	GAAGA	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	1 cut(s)	52
MroI	TCCGGA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	16, 139
NdeII	GATC	2 cut(s)	42, 96
NmeAIII	GCCGAG	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	135
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	42, 96
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	92, 135, 144
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	3 cut(s)	5, 165, 185
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	32, 154
TaqI	TCGA	5 cut(s)	39, 45, 99, 129, 223
TasI	AATT	1 cut(s)	218
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.