Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Forward (+)

72868691 .. 72869152

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGGTCAACGTCAATGTGATTGAGTCGACAGTGGTGAGGCCAGCCTCGGAGACACCTCGGCAGTCGTTATGGCTCTCGAACATGGACTTGGTACAGCCCAGCACTCACACTCCTAGTATTTATATCTACAAGCCAAAAGTCGATGCTGGTGCAGACAAGGACAGTAATTTTTTTGACATGCATGTCTTCAAAGACGCGCTCGGCAAGGCCCTTATGCCCTTTTACCCTTTGGTCGGCCGCCTGAAGCGAAAAATAATGGATGAGGGTAAGAAGGGTCGTCTCGACATAGATTGCAATGCGGAGGAGGCCTTGTTTGTTGTAGCCCATAGTAGCTCTTGCATCGATGACTTTAGCGATTTTGCACCCACTCCAACTTCAGGAGAGGGTTCCTCCCTACTGTTGATTATTCCGGTGGGATATCTTCTTATCCTCTGTTGCTGGTACATATCACATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

5.47

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 126	1.5e-23	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	5, 241, 302
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	266, 363
AfaI	GTAC	2 cut(s)	96, 446
AfiI	CCNNNNNNNGG	2 cut(s)	236, 380
AgsI	TTSAA	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	47, 287
AoxI	GGCC	4 cut(s)	41, 210, 238, 309
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcoDI	GTCTC	2 cut(s)	47, 287
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	2 cut(s)	136, 351
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bsa29I	ATCGAT	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	48, 59
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 380
Bse3DI	GCAATG	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	48, 59
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	236, 380
BseMI	GCAATG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	320
BseX3I	CGGCCG	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	43, 212, 240, 311
BshVI	ATCGAT	1 cut(s)	345
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	236, 380
BsmAI	GTCTC	2 cut(s)	47, 287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	4 cut(s)	43, 212, 240, 311
BspACI	CCGC	3 cut(s)	5, 241, 302
BspANI	GGCC	4 cut(s)	43, 212, 240, 311
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	48, 59
Bst4CI	ACNGT	3 cut(s)	34, 167, 402
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	47, 287
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	184, 188
BstUI	CGCG	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	43, 212, 240, 311
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	95, 445
CviAII	CATG	3 cut(s)	85, 181, 185
CviQI	GTAC	2 cut(s)	95, 445
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	422
Eco52I	CGGCCG	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	266, 363
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	422
EcoT22I	ATGCAT	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	88, 184, 188
FatI	CATG	3 cut(s)	84, 180, 184
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	4 cut(s)	43, 212, 240, 311
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	88, 184, 188
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	10, 30
HindII	GTYRAC	2 cut(s)	10, 30
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	10, 30
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	79, 284, 381
Hpy8I	GTNNAC	2 cut(s)	10, 30
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	3 cut(s)	34, 167, 402
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	5 cut(s)	155, 184, 297, 342, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	88, 184, 188
HspAI	GCGC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	57, 115, 135, 257, 366, 426, 427
LweI	GCATC	2 cut(s)	136, 351
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	12
MboII	GAAGA	2 cut(s)	181, 416
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	33, 58, 69, 259, 298, 301, 379, 403, 443
Mph1103I	ATGCAT	1 cut(s)	186
MseI	TTAA	1 cut(s)	460
MspI	CCGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	308
NlaIII	CATG	3 cut(s)	88, 184, 188
NlaIV	GGNNCC	1 cut(s)	391
NmeAIII	GCCGAG	2 cut(s)	40, 183
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	2 cut(s)	184, 188
PceI	AGGCCT	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	96, 446
RsaNI	GTAC	2 cut(s)	95, 445
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	35
SetI	ASST	3 cut(s)	15, 61, 338
SfaNI	GCATC	2 cut(s)	136, 351
Sse9I	AATT	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	5, 241, 302
SspMI	CTAG	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	34, 167, 402
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	5 cut(s)	29, 80, 144, 285, 345
TasI	AATT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	1 cut(s)	39
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	2 cut(s)	184, 188
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.