Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00078

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

29208 .. 33509

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTCACTGTGGCGACCGAAACAACCACCATGTCGAATACCATCCTCCTCCATCGGTCACAAAAGCAGCCGCCGCTTCTGATCCCGATCATGAGACGGCTACAGTCTCCGTTTTTAAGTTCACAAGGGAGCAGATCAACATCTTGAAAGCTAAGTCGTTAACAACCAAGAAAGATGACGATGTTGATAACGGGAACTCCTTCGTGAAGTACACTTCGTATGAGGTCTTTGCAGCTCATGTATGGAGATCTGCATGCAAGGCACGTGAACTTGCTGATGATCAAGAGACACAATTCCACATTGCCGCAAATGGACGGTCGAGATTGCAACCCCCACTCCCACCTGGTTACTTTGGTAATGTGATTTTCTCATGTGCACCAACTGCCCTAGCAGGGGACCTCATATCGAAACCGATGAGCTACGCTGCGAGCTGCATTCACAAGGCTTTGGTGCGTATGGACGATGAGTATCTCCGATCAGCCCTCGACTATCTTGAGCTTCAGCAGTCTCATCATCATCTGTCGAGCCTTGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

179

Amino Acids

19.91

Weight (kDa)

6.58

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 171	7.6e-28	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 75, 306
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	485
AcvI	CACGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	393, 394
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	5 cut(s)	152, 236, 420, 432, 499
AluI	AGCT	5 cut(s)	152, 236, 420, 432, 499
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	4 cut(s)	89, 112, 281, 513
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	68, 233, 425, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	379
BbrPI	CACGTG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	80, 245, 412, 419
BccI	CCATC	2 cut(s)	51, 61
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	89, 112, 281, 513
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	102
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	7 cut(s)	69, 72, 75, 234, 306, 426, 433
BlsI	GCNGC	7 cut(s)	70, 73, 76, 235, 307, 427, 434
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	345
BplI	GAGNNNNNCTC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	266
BsaBI	GATNNNNATC	3 cut(s)	87, 140, 468
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 394
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	3 cut(s)	87, 140, 468
BseBI	CCWGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	3 cut(s)	87, 140, 468
BseLI	CCNNNNNNNGG	2 cut(s)	393, 394
BseMI	GCAATG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	80, 245, 412, 419
Bsh1285I	CGRYCG	2 cut(s)	19, 320
BsiEI	CGRYCG	2 cut(s)	19, 320
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	393, 394
BsmAI	GTCTC	4 cut(s)	89, 112, 281, 513
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
BspACI	CCGC	3 cut(s)	72, 75, 306
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	11, 106, 318
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	256, 430, 535
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	6 cut(s)	85, 91, 138, 251, 283, 479
BstMAI	GTCTC	4 cut(s)	89, 112, 281, 513
BstMBI	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
BstMCI	CGRYCG	2 cut(s)	19, 320
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 260, 383, 534
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	4 cut(s)	80, 245, 412, 419
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	3 cut(s)	256, 430, 535
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	5 cut(s)	32, 92, 239, 255, 372
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	6 cut(s)	84, 90, 137, 250, 282, 478
DpnII	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	485
Eco72I	CACGTG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	5 cut(s)	35, 95, 242, 258, 375
FaiI	YATR	9 cut(s)	33, 93, 222, 240, 244, 256, 373, 404, 458
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	5 cut(s)	31, 91, 238, 254, 371
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	7 cut(s)	69, 72, 75, 234, 306, 426, 433
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	7 cut(s)	69, 72, 75, 234, 306, 426, 433
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	7 cut(s)	69, 72, 75, 234, 306, 426, 433
Hin1II	CATG	5 cut(s)	35, 95, 242, 258, 375
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HpaI	GTTAAC	1 cut(s)	162
Hpy166II	GTNNAC	5 cut(s)	123, 162, 213, 269, 377
Hpy188I	TCNGA	2 cut(s)	82, 476
Hpy188III	TCNNGA	7 cut(s)	86, 92, 145, 205, 284, 321, 494
Hpy8I	GTNNAC	5 cut(s)	123, 162, 213, 269, 377
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	11, 106, 318
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	6 cut(s)	233, 254, 258, 328, 377, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 260, 383, 534
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	5 cut(s)	35, 95, 242, 258, 375
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	330, 357, 378
Lsp1109I	GCAGC	4 cut(s)	80, 245, 412, 419
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	58, 347
MalI	GATC	6 cut(s)	84, 90, 137, 250, 282, 478
MboI	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	1 cut(s)	293
MnlI	CCTC	5 cut(s)	57, 60, 217, 410, 494
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	2 cut(s)	117, 161
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	74, 260, 383, 534
NdeII	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
NlaIII	CATG	5 cut(s)	35, 95, 242, 258, 375
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	258
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	200
PkrI	GCNGC	7 cut(s)	70, 73, 76, 235, 307, 427, 434
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	343
PspCI	CACGTG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	117, 161
SatI	GCNGC	7 cut(s)	69, 72, 75, 234, 306, 426, 433
Sau3AI	GATC	6 cut(s)	82, 88, 135, 248, 280, 476
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	9 cut(s)	154, 228, 238, 268, 346, 402, 422, 434, 501
SexAI	ACCWGGT	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	3 cut(s)	72, 75, 306
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	11, 106, 318
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	5 cut(s)	36, 320, 407, 486, 524
TaqII	GACCGA	2 cut(s)	33, 46
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	3 cut(s)	74, 77, 308
Tru1I	TTAA	2 cut(s)	117, 161
Tru9I	TTAA	2 cut(s)	117, 161
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	4 cut(s)	68, 233, 425, 432
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.