Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000233

Physical Location & Seq

Genomic Coordinates Reverse (-)

14661696 .. 14662225

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGTGGAGACGATCGATCGTGAAGCCGGCAGAGGAGACGCCGAAGCAGGTTCTGTGGATGTCCAACTTGGACTTGGTGATTTTGAGCAAGCACACCCCCAGTGTCTACTTCTACCGGCGAAGCCAAACCGGCGGCCATCCCACCAGCCCCTTCTTCGACCCGGCACTGCTTAAGGGCGCCCTCTCCAAGGCCCTCGTACCGTTCTACCCCCTGGCGGGGCGCCTCCAGCAGAACGAAACAGGCCGTTCCGAAATCAACTGCAATGGGGAGGGCGTGCTGTTTGCTGTGGCGGAGACCGACTCCGTCCTCGAGAATTTCGGCGATTTTGCGCCAACTCCCGAGTTCCGGAAGCTTATCCCCGTCGTCGATTATTCTGCTGGGATTTCCACTTATCCCCTCTTTGTGGTACAGGTATGTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

143

Amino Acids

15.81

Weight (kDa)

6.72

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48930
fragaria_vesca	FvH4_2g37730 FvH4_3g06650 FvH4_3g06650 FvH4_3g06650 FvH4_3g06690 FvH4_3g06690 FvH4_3g06690 FvH4_3g37080 FvH4_3g44400 FvH4_3g44420 FvH4_3g44430 FvH4_3g44440 FvH4_6g28410
malus_domestica	MD09G1226600.v1.1 MD09G1230000.v1.1 MD09G1230100.v1.1 MD17G1224900.v1.1 MD17G1225100.v1.1
prunus_persica	Prupe.3G100800_v2.0.a1 Prupe.3G101000_v2.0.a1 Prupe.3G101400_v2.0.a1 Prupe.3G101500_v2.0.a1 Prupe.3G101600_v2.0.a1 Prupe.3G101900_v2.0.a1
pyrus_communis	pycom09g14560 pycom09g14850 pycom09g14880 pycom17g22900
rosa_chinensis	RchiOBHm_Chr2g0132521 RchiOBHm_Chr2g0132571 RchiOBHm_Chr2g0132581 RchiOBHm_Chr2g0132601 RchiOBHm_Chr2g0132651 RchiOBHm_Chr5g0066491 RchiOBHm_Chr5g0066541 RchiOBHm_Chr5g0066631 RchiOBHm_Chr5g0066641 RchiOBHm_Chr5g0066711 RchiOBHm_Chr5g0066721 RchiOBHm_Chr5g0066761 RchiOBHm_Chr5g0066771 RchiOBHm_Chr5g0066791 RchiOBHm_Chr5g0066811 RchiOBHm_Chr5g0081061 RchiOBHm_Chr5g0081111
rosa_laevigata	RLG00000019264 RLG00000019269 RLG00000019270 RLG00000035871 RLG00000035873 RLG00000035874 RLG00000035875 RLG00000036910
rosa_multiflora	Rmu_co8101688.1_g000001 Rmu_co8204910.1_g000001 Rmu_co8308169.1_g000001 Rmu_sc0000605.1_g000027 Rmu_sc0000605.1_g000029 Rmu_sc0000605.1_g000045 Rmu_sc0000605.1_g000049 Rmu_sc0005460.1_g000001 Rmu_sc0005460.1_g000009 Rmu_sc0008823.1_g000006 Rmu_sc0012629.1_g000001 Rmu_sc0014046.1_g000003 Rmu_sc0025032.1_g000001 Rmu_ssc0000074.1_g000018 Rmu_ssc0000074.1_g000029 Rmu_ssc0000432.1_g000085 Rmu_ssc0000432.1_g000114
rosa_roxburghii	Rroxscaffold_1G00002330 Rroxscaffold_1G00002370 Rroxscaffold_1G00014290 Rroxscaffold_1G00014320 Rroxscaffold_1G00014350 Rroxscaffold_1G00014370 Rroxscaffold_1G00014380 Rroxscaffold_1G00014500 Rroxscaffold_1G00014530 Rroxscaffold_1G00014550 Rroxscaffold_2G00111750 Rroxscaffold_2G00111800 Rroxscaffold_2G00111850
rosa_rugosa	Rorug02G0305200 Rorug02G0305300 Rorug02G0305900 Rorug02G0305900 Rorug05G0378800 Rorug05G0379000 Rorug05G0379000 Rorug05G0473400
rosa_samantha	Rh2AG358000 Rh2AG358100 Rh2AG358200 Rh2AG358300 Rh2AG358600 Rh2AG358700 Rh2AG358900 Rh2BG364400 Rh2BG364900 Rh2BG365000 Rh2BG365100 Rh2BG365500 Rh2CG341500 Rh2CG342100 Rh2DG381100 Rh2DG381500 Rh2DG381800 Rh5AG525900 Rh5BG453900 Rh5BG454100 Rh5BG454200 Rh5BG454500 Rh5BG454700 Rh5BG455100 Rh5BG455300 Rh5BG549800 Rh5BG550200 Rh5CG476200 Rh5CG476400 Rh5CG476500 Rh5CG476800 Rh5CG477000 Rh5CG477200 Rh5CG477400 Rh5CG572500 Rh5CG573100 Rh5DG469000 Rh5DG469200 Rh5DG469900 Rh5DG470000 Rh5DG470100 Rh5DG559900
rosa_wichuraiana	Rw0G002550 Rw0G012040 Rw2G029120 Rw2G029210 Rw5G040950 Rw5G040970 Rw5G048860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AccB1I	GGYRCC	2 cut(s)	179, 222
AccI	GTMKAC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	3 cut(s)	135, 218, 293
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	316
AcyI	GRCGYC	3 cut(s)	41, 180, 223
AfaI	GTAC	2 cut(s)	201, 411
AfiI	CCNNNNNNNGG	6 cut(s)	190, 217, 218, 219, 348, 406
AflII	CTTAAG	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	4, 32, 290
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	2 cut(s)	311, 341
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	3 cut(s)	136, 192, 244
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	3 cut(s)	182, 225, 334
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	2 cut(s)	311, 341
BanI	GGYRCC	2 cut(s)	179, 222
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	4, 32, 290
BfoI	RGCGCY	2 cut(s)	183, 226
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	164, 215
BmeT110I	CYCGRG	2 cut(s)	311, 341
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	181, 224
BmrFI	CCNGG	2 cut(s)	164, 215
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	17
BsaHI	GRCGYC	3 cut(s)	41, 180, 223
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	189, 213
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 217, 218, 219, 348, 406
Bse118I	RCCGGY	3 cut(s)	28, 117, 131
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	271
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	189, 213
BseGI	GGATG	2 cut(s)	66, 139
BseLI	CCNNNNNNNGG	6 cut(s)	190, 217, 218, 219, 348, 406
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	380
Bsh1285I	CGRYCG	2 cut(s)	17, 21
BshFI	GGCC	3 cut(s)	138, 194, 246
BshNI	GGYRCC	2 cut(s)	179, 222
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	2 cut(s)	17, 21
BsiHKCI	CYCGRG	2 cut(s)	311, 341
BsiSI	CCGG	5 cut(s)	29, 118, 132, 164, 349
BslI	CCNNNNNNNGG	6 cut(s)	190, 217, 218, 219, 348, 406
BsmAI	GTCTC	3 cut(s)	4, 32, 290
BsmBI	CGTCTC	2 cut(s)	4, 32
BsnI	GGCC	3 cut(s)	138, 194, 246
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	2 cut(s)	311, 341
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	14, 18
BspACI	CCGC	3 cut(s)	135, 218, 293
BspANI	GGCC	3 cut(s)	138, 194, 246
BspDI	ATCGAT	1 cut(s)	17
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	181, 224
BspMI	ACCTGC	1 cut(s)	40
BspT107I	GGYRCC	2 cut(s)	179, 222
BspTI	CTTAAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	3 cut(s)	28, 117, 131
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	3 cut(s)	28, 117, 131
BssECI	CCNNGG	2 cut(s)	189, 213
BssMI	GATC	2 cut(s)	14, 18
BssNI	GRCGYC	3 cut(s)	41, 180, 223
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	3 cut(s)	41, 180, 223
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	30, 92, 278
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	66, 139
BstH2I	RGCGCY	2 cut(s)	183, 226
BstHHI	GCGC	3 cut(s)	182, 225, 334
BstKTI	GATC	2 cut(s)	17, 21
BstMAI	GTCTC	3 cut(s)	4, 32, 290
BstMBI	GATC	2 cut(s)	14, 18
BstMCI	CGRYCG	2 cut(s)	17, 21
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 229
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	162, 213
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	138, 194, 246
BsuTUI	ATCGAT	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	66, 139
BtsI	GCAGTG	2 cut(s)	11, 167
BtsIMutI	CAGTG	3 cut(s)	11, 109, 167
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	30, 92, 278
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	3 cut(s)	182, 225, 334
Cfr10I	RCCGGY	3 cut(s)	28, 117, 131
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	200, 410
CviJI	RGCY	7 cut(s)	28, 126, 138, 150, 194, 246, 355
CviKI_1	RGCY	7 cut(s)	28, 126, 138, 150, 194, 246, 355
CviQI	GTAC	2 cut(s)	200, 410
DinI	GGCGCC	2 cut(s)	181, 224
DpnI	GATC	2 cut(s)	16, 20
DpnII	GATC	2 cut(s)	14, 18
EaeI	YGGCCR	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	290
Eco88I	CYCGRG	2 cut(s)	311, 341
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	189
EgeI	GGCGCC	2 cut(s)	181, 224
EheI	GGCGCC	2 cut(s)	181, 224
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	2 cut(s)	4, 32
FaiI	YATR	2 cut(s)	418, 424
FauI	CCCGC	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	73, 126
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	3 cut(s)	181, 224, 333
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	2 cut(s)	183, 226
HaeIII	GGCC	3 cut(s)	138, 194, 246
HapII	CCGG	5 cut(s)	29, 118, 132, 164, 349
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	3 cut(s)	182, 225, 334
Hin1I	GRCGYC	3 cut(s)	41, 180, 223
Hin6I	GCGC	3 cut(s)	180, 223, 332
HinP1I	GCGC	3 cut(s)	180, 223, 332
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	5 cut(s)	29, 118, 132, 164, 349
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	4 cut(s)	22, 313, 341, 349
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	368, 371
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	4, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 229
Hsp92I	GRCGYC	3 cut(s)	41, 180, 223
HspAI	GCGC	3 cut(s)	180, 223, 332
KasI	GGCGCC	2 cut(s)	179, 222
Kpn2I	TCCGGA	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	14, 18
MalI	GATC	2 cut(s)	16, 20
MboI	GATC	2 cut(s)	14, 18
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	1 cut(s)	316
Mly113I	GGCGCC	2 cut(s)	180, 223
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	7 cut(s)	28, 194, 206, 236, 265, 320, 410
MroI	TCCGGA	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	174
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	5 cut(s)	29, 118, 132, 164, 349
MspR9I	CCNGG	2 cut(s)	164, 215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	132, 229
NaeI	GCCGGC	1 cut(s)	30
NarI	GGCGCC	2 cut(s)	180, 223
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	14, 18
NgoMIV	GCCGGC	1 cut(s)	28
NlaIV	GGNNCC	2 cut(s)	181, 224
PaeR7I	CTCGAG	1 cut(s)	311
PdiI	GCCGGC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	137
Ple19I	CGATCG	2 cut(s)	17, 21
PleI	GAGTC	1 cut(s)	296
PluTI	GGCGCC	2 cut(s)	183, 226
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	181, 224
PspPI	GGNCC	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	305
PvuI	CGATCG	2 cut(s)	17, 21
RsaI	GTAC	2 cut(s)	201, 411
RsaNI	GTAC	2 cut(s)	200, 410
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	14, 18
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	164, 215
SetI	ASST	3 cut(s)	54, 357, 417
SfoI	GGCGCC	2 cut(s)	181, 224
Sfr274I	CTCGAG	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	173, 311
SmoI	CTYRAG	2 cut(s)	173, 311
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	3 cut(s)	135, 218, 293
SspDI	GGCGCC	2 cut(s)	179, 222
StyD4I	CCNGG	2 cut(s)	162, 213
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	17, 159, 312, 369
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	316
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	109, 174
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	109, 174
Tth111I	GACNNNGTC	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.