FvH4_5g24290

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
15641374 .. 15643601
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24290.t1

Sequence Viewer

Length: 1218 bp
ATGGCAGAAAGTGCAGTGGCCTTTTTAGTTGACAAGCTCAAGTTGCGGATCGAAGGAGAGGCGAAACAGTTGTCAGGAATCAAAGCAGAGGTGAGGGACATGATTGATGAATTAGAGAGTATTCAGGCTTTCTTAAAGGTTGCTGATGCAAAGGAAGAAGGTGATCCTCAGCTCAAAAGATTTGAGAGGAGAGAGAAAGTAGATATGAGTTTCCCTTTCTCCTTCGCCGTTAACTTCCGAGCACCACCACAAGTCAGAGAAGTGGCTAATGAGATCGAAGATGTCCTGGATAAATTCAGGCTGTCCTATTCCAATGATTCCCCGCCTGGATTCTCTACTGCACTTAACAAGCTTACTTGCTTCATCAAGACATGGAAAGCTTTCCATCAAACTGCTGCTGATATTGAAGACCTGAACTCCAAAGTCAGAAGCCTCTCAAAGGGACATCAAAGATACAAAGTTATTGACCAAGCTGGTCTCACCTCTTCTCTTTGGTTTGTTCAACAGGAGGCCCCCTTACTGGAAGCAGCAAATCTTATGGGGATCAGGGAGCAGCCTAAGAAACAGCTGATTGAGATGCTTATGAACCATGAACCAGGTCGCCAGGTGGTATCAGTGGTAGGGATGGGCGGATTGGGCAAAACAACCTTGGTAAAGCAAGTTTATGAGGACCCCATGGTTAGAAAACGCTTCAAGGTTCATGCTTGGATCACTGTTTCTCAGTCGGTCAATATGAACCAGCTCTTAAGACTCATGATTCATAACATTTTCCAAGTTATTCAGAAAACACCTGAGGAAGAGGTAGATAGCATGGAGAACAACCAGCTACAAGAAAGAATCAAAAAGTTGTTGCAGCAAAGTAGGTACCTTATTGTTCTTGATGATTTTTGGCACATAGATGCCTGGGATGACATCAAGCATTCAATGCCAGACAACAAACTTGGTAGTCGAGTAATGATCACTACTCGTAATCATGTTGTAGCACACGCCTCGGGGGAGCGAAGTATGGTGTACTGTTTAGAGCCCTTATCTGCAGAGGAGTCTCAGACTCTTTTATATAAGAAGACATTTCAGGCAGACTTATGCTCGCCAAACTTGAAGAACATTTGTGACCGCATCTTAAGCAAATGCGGAGGACTGCCCCTAGCAATTGTAGCAATTGGTGCTGTTCTAGCTGCGAAAGACGAGAAATATAGATCAATGGACTGCTGTTTGTAA

Protein Analysis

406

Amino Acids

46.06

Weight (kDa)

7.11

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 60 1.1e-10 Rx N-terminal domain
NB-ARC PF00931 184 - 361 1.4e-43 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 864
AccB1I GGYRCC 1 cut(s) 864
AciI CCGC 5 cut(s) 46, 323, 630, 1114, 1131
AclWI GGATC 4 cut(s) 56, 158, 551, 716
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 866, 1013
AfiI CCNNNNNNNGG 2 cut(s) 439, 520
AflII CTTAAG 2 cut(s) 745, 1120
AgsI TTSAA 5 cut(s) 407, 503, 694, 924, 1099
AjnI CCWGG 5 cut(s) 285, 325, 595, 603, 902
AluBI AGCT 9 cut(s) 37, 172, 352, 380, 473, 568, 742, 826, 1175
AluI AGCT 9 cut(s) 37, 172, 352, 380, 473, 568, 742, 826, 1175
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 482, 1047
AlwI GGATC 4 cut(s) 56, 158, 551, 716
Ama87I CYCGRG 1 cut(s) 991
AoxI GGCC 2 cut(s) 18, 510
ApeKI GCWGC 5 cut(s) 395, 527, 553, 853, 1175
ApoI RAATTY 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp700I GAANNNNTTC 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 864
AspS9I GGNCC 2 cut(s) 511, 670
AsuHPI GGTGA 3 cut(s) 103, 173, 472
AvaI CYCGRG 1 cut(s) 991
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 792
BanI GGYRCC 1 cut(s) 864
BanII GRGCYC 1 cut(s) 1026
BbsI GAAGAC 2 cut(s) 414, 1070
Bbv12I GWGCWC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 382, 539, 565, 865, 1162
BccI CCATC 2 cut(s) 393, 619
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 972, 1006
BciT130I CCWGG 5 cut(s) 287, 327, 597, 605, 904
BclI TGATCA 1 cut(s) 957
BcoDI GTCTC 2 cut(s) 482, 1047
BfaI CTAG 2 cut(s) 1145, 1172
BfmI CTRYAG 1 cut(s) 1032
BfrI CTTAAG 2 cut(s) 745, 1120
BisI GCNGC 5 cut(s) 396, 528, 554, 854, 1176
BlsI GCNGC 5 cut(s) 397, 529, 555, 855, 1177
Bme1390I CCNGG 5 cut(s) 287, 327, 597, 605, 904
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 991
BmgT120I GGNCC 2 cut(s) 511, 670
BmiI GGNNCC 3 cut(s) 513, 672, 866
BmrFI CCNGG 5 cut(s) 287, 327, 597, 605, 904
BmsI GCATC 4 cut(s) 136, 567, 889, 1125
BpiI GAAGAC 2 cut(s) 414, 1070
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 648, 675, 903, 990
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 520
Bse1I ACTGG 1 cut(s) 525
Bse21I CCTNAGG 1 cut(s) 792
BseBI CCWGG 5 cut(s) 287, 327, 597, 605, 904
BseDI CCNNGG 4 cut(s) 648, 675, 903, 990
BseGI GGATG 2 cut(s) 630, 913
BseLI CCNNNNNNNGG 2 cut(s) 439, 520
BseMII CTCAG 4 cut(s) 182, 734, 783, 1058
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 2 cut(s) 202, 1052
BseXI GCAGC 5 cut(s) 382, 539, 565, 865, 1162
BsgI GTGCAG 2 cut(s) 33, 324
BshFI GGCC 2 cut(s) 20, 512
BshNI GGYRCC 1 cut(s) 864
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 991
BslFI GGGAC 2 cut(s) 110, 456
BslI CCNNNNNNNGG 2 cut(s) 439, 520
BsmAI GTCTC 2 cut(s) 482, 1047
BsmFI GGGAC 2 cut(s) 110, 456
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 2 cut(s) 20, 512
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 991
Bsp1286I GDGCHC 2 cut(s) 244, 1026
Bsp143I GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 5 cut(s) 46, 323, 630, 1114, 1131
BspANI GGCC 2 cut(s) 20, 512
BspCNI CTCAG 4 cut(s) 181, 733, 784, 1057
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 513, 672, 866
BspMAI CTGCAG 1 cut(s) 1036
BspPI GGATC 4 cut(s) 56, 158, 551, 716
BspT107I GGYRCC 1 cut(s) 864
BspTI CTTAAG 2 cut(s) 745, 1120
BspTNI GGTCTC 1 cut(s) 482
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 4 cut(s) 648, 675, 903, 990
BssMI GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
BssT1I CCWWGG 2 cut(s) 648, 675
Bst2UI CCWGG 5 cut(s) 287, 327, 597, 605, 904
Bst4CI ACNGT 3 cut(s) 69, 715, 1016
Bst6I CTCTTC 2 cut(s) 490, 792
BstAFI CTTAAG 2 cut(s) 745, 1120
BstAPI GCANNNNNTGC 3 cut(s) 11, 925, 1163
BstC8I GCNNGC 1 cut(s) 1088
BstDEI CTNAG 5 cut(s) 168, 558, 720, 792, 1044
BstDSI CCRYGG 1 cut(s) 675
BstENI CCTNNNNNAGG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 630, 913
BstKTI GATC 7 cut(s) 51, 166, 276, 546, 711, 960, 1199
BstMAI GTCTC 2 cut(s) 482, 1047
BstMBI GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
BstMWI GCNNNNNNNGC 8 cut(s) 11, 43, 636, 925, 1122, 1154, 1163, 1172
BstNI CCWGG 5 cut(s) 287, 327, 597, 605, 904
BstSCI CCNGG 5 cut(s) 285, 325, 595, 603, 902
BstSFI CTRYAG 1 cut(s) 1032
BstV1I GCAGC 5 cut(s) 382, 539, 565, 865, 1162
BstV2I GAAGAC 2 cut(s) 414, 1070
Bsu36I CCTNAGG 1 cut(s) 792
BsuRI GGCC 2 cut(s) 20, 512
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 2 cut(s) 630, 913
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 621, 711
Cac8I GCNNGC 1 cut(s) 1088
CciI TCATGA 1 cut(s) 753
Cfr13I GGNCC 2 cut(s) 511, 670
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 2 cut(s) 865, 1012
CviAII CATG 8 cut(s) 100, 372, 590, 676, 701, 754, 811, 974
CviQI GTAC 2 cut(s) 865, 1012
DdeI CTNAG 5 cut(s) 168, 558, 720, 792, 1044
DpnI GATC 7 cut(s) 50, 165, 275, 545, 710, 959, 1198
DpnII GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
Eam1104I CTCTTC 2 cut(s) 490, 792
EarI CTCTTC 2 cut(s) 490, 792
EciI GGCGGA 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 648, 675
Eco24I GRGCYC 1 cut(s) 1026
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 670
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 991
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoO109I RGGNCCY 2 cut(s) 511, 670
EcoRII CCWGG 5 cut(s) 285, 325, 595, 603, 902
EcoT14I CCWWGG 2 cut(s) 648, 675
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 2 cut(s) 648, 675
FaeI CATG 8 cut(s) 103, 375, 593, 679, 704, 757, 814, 977
FaqI GGGAC 2 cut(s) 110, 456
FatI CATG 8 cut(s) 99, 371, 589, 675, 700, 753, 810, 973
FauI CCCGC 1 cut(s) 330
FbaI TGATCA 1 cut(s) 957
Fnu4HI GCNGC 5 cut(s) 396, 528, 554, 854, 1176
FokI GGATG 2 cut(s) 637, 920
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 5 cut(s) 396, 528, 554, 854, 1176
FspBI CTAG 2 cut(s) 1145, 1172
GluI GCNGC 5 cut(s) 396, 528, 554, 854, 1176
HaeIII GGCC 2 cut(s) 20, 512
Hin1II CATG 8 cut(s) 103, 375, 593, 679, 704, 757, 814, 977
HincII GTYRAC 2 cut(s) 31, 232
HindII GTYRAC 2 cut(s) 31, 232
HindIII AAGCTT 2 cut(s) 350, 378
HinfI GANTC 8 cut(s) 78, 317, 330, 750, 757, 837, 1040, 1048
HpaI GTTAAC 1 cut(s) 232
HphI GGTGA 3 cut(s) 103, 173, 472
Hpy166II GTNNAC 3 cut(s) 31, 232, 1012
Hpy188I TCNGA 5 cut(s) 239, 257, 428, 783, 1047
Hpy188III TCNNGA 4 cut(s) 75, 367, 754, 878
Hpy8I GTNNAC 3 cut(s) 31, 232, 1012
HpyAV CCTTC 3 cut(s) 47, 152, 232
HpyCH4III ACNGT 3 cut(s) 69, 715, 1016
HpyCH4V TGCA 5 cut(s) 14, 149, 341, 853, 1034
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 43, 636, 925, 1122, 1154, 1163, 1172
HpyF3I CTNAG 5 cut(s) 168, 558, 720, 792, 1044
Hsp92II CATG 8 cut(s) 103, 375, 593, 679, 704, 757, 814, 977
KpnI GGTACC 1 cut(s) 868
Ksp22I TGATCA 1 cut(s) 957
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
LmnI GCTCC 2 cut(s) 550, 997
Lsp1109I GCAGC 5 cut(s) 382, 539, 565, 865, 1162
LweI GCATC 4 cut(s) 136, 567, 889, 1125
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 2 cut(s) 1145, 1172
MaeIII GTNAC 1 cut(s) 1109
MalI GATC 7 cut(s) 50, 165, 275, 545, 710, 959, 1198
MboI GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
MboII GAAGA 7 cut(s) 167, 290, 419, 477, 809, 1075, 1111
MfeI CAATTG 2 cut(s) 1149, 1158
MhlI GDGCHC 2 cut(s) 244, 1026
MluCI AATT 4 cut(s) 110, 293, 1149, 1158
MlyI GAGTC 3 cut(s) 744, 1042, 1049
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 5 cut(s) 134, 231, 345, 746, 1121
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 568
MspCI CTTAAG 2 cut(s) 745, 1120
MspR9I CCNGG 5 cut(s) 287, 327, 597, 605, 904
MunI CAATTG 2 cut(s) 1149, 1158
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 5 cut(s) 287, 327, 597, 605, 904
MwoI GCNNNNNNNGC 8 cut(s) 11, 43, 636, 925, 1122, 1154, 1163, 1172
NcoI CCATGG 1 cut(s) 675
NdeII GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
NlaIII CATG 8 cut(s) 103, 375, 593, 679, 704, 757, 814, 977
NlaIV GGNNCC 3 cut(s) 513, 672, 866
NmuCI GTSAC 1 cut(s) 1109
PagI TCATGA 1 cut(s) 753
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 5 cut(s) 78, 317, 330, 757, 837
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 5 cut(s) 397, 529, 555, 855, 1177
PleI GAGTC 3 cut(s) 744, 1042, 1048
PpsI GAGTC 3 cut(s) 744, 1042, 1048
PpuMI RGGWCCY 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 5 cut(s) 285, 325, 595, 603, 902
PspGI CCWGG 5 cut(s) 285, 325, 595, 603, 902
PspN4I GGNNCC 3 cut(s) 513, 672, 866
PspPI GGNCC 2 cut(s) 511, 670
PspPPI RGGWCCY 1 cut(s) 670
PstI CTGCAG 1 cut(s) 1036
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 866, 1013
RsaNI GTAC 2 cut(s) 865, 1012
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 5 cut(s) 134, 231, 345, 746, 1121
SatI GCNGC 5 cut(s) 396, 528, 554, 854, 1176
Sau3AI GATC 7 cut(s) 48, 163, 273, 543, 708, 957, 1196
Sau96I GGNCC 2 cut(s) 511, 670
SchI GAGTC 3 cut(s) 744, 1042, 1049
ScrFI CCNGG 5 cut(s) 287, 327, 597, 605, 904
SduI GDGCHC 2 cut(s) 244, 1026
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 4 cut(s) 136, 567, 889, 1125
SfcI CTRYAG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 3 cut(s) 38, 745, 1120
SmoI CTYRAG 3 cut(s) 38, 745, 1120
Sse9I AATT 4 cut(s) 110, 293, 1149, 1158
SsiI CCGC 5 cut(s) 46, 323, 630, 1114, 1131
SspMI CTAG 2 cut(s) 1145, 1172
StyD4I CCNGG 5 cut(s) 285, 325, 595, 603, 902
StyI CCWWGG 2 cut(s) 648, 675
TaaI ACNGT 3 cut(s) 69, 715, 1016
TaqI TCGA 3 cut(s) 51, 276, 949
TaqII GACCGA 1 cut(s) 715
TasI AATT 4 cut(s) 110, 293, 1149, 1158
TatI WGTACW 1 cut(s) 1011
TfiI GAWTC 5 cut(s) 78, 317, 330, 757, 837
Tru1I TTAA 5 cut(s) 134, 231, 345, 746, 1121
Tru9I TTAA 5 cut(s) 134, 231, 345, 746, 1121
TscAI CASTG 3 cut(s) 21, 621, 718
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 5 cut(s) 395, 527, 553, 853, 1175
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 7 cut(s) 123, 352, 599, 606, 689, 749, 749
TspRI CASTG 3 cut(s) 21, 621, 718
Vha464I CTTAAG 2 cut(s) 745, 1120
VpaK11BI GGWCC 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 1145, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.