Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29668161 .. 29671011

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTGAAAGTGTAGTAACATTTTTAGTTTTCAAGCTTAAGACGTTACTCGAAGAAGAGGTGAAACTATTGTCAGGGATCCAAGTACAGGTCCAGGAGGTGGTTGATGAATTAGAACGCATCCAGGCGTTCTTAAGGGTTGCTGATGCAAAGGAAGACAGCGATCCTCAGCTGAAAGTGTGGGTTGATCAAGTCAGAGATGTGGCTCATGAGATGGAAGATTCCCTTGATAAATTCAGGCATTCCTATTCACATGATCACGGTCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGTATCATCAAGAAATGGAAAGCTCGCAGACAAATTGCTGCTGATATTGAAGGCCTAAAGTATAGAGTCACGAGTCTCTCAAAGGGGCAAGAGCGATACAAATTTGTTGATCAAGCTGGCTCCACCTCTGGTCGTCAGGTTCAACATCAGTTCTATCGAGGGGATGCCATTTTACTAGAAGAGGCTGAGCTGGTGGCAATCGGCGAGCGGAAAAGGAAACTTTTTGAGTTGCTTATGAAGGAAGAATCCACACGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

185

Amino Acids

21.44

Weight (kDa)

6.67

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 88	1.1e-24	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	505
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	3 cut(s)	73, 86, 158
AcsI	RAATTY	2 cut(s)	233, 398
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	88, 100
AflII	CTTAAG	2 cut(s)	38, 133
AgsI	TTSAA	3 cut(s)	34, 347, 440
AjnI	CCWGG	2 cut(s)	93, 123
AluBI	AGCT	7 cut(s)	37, 172, 278, 292, 320, 413, 487
AluI	AGCT	7 cut(s)	37, 172, 278, 292, 320, 413, 487
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	73, 86, 158
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	233, 398
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	95, 125
BclI	TGATCA	3 cut(s)	187, 256, 406
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	473
BfrI	CTTAAG	2 cut(s)	38, 133
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	95, 125
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	80, 418
BmrFI	CCNGG	2 cut(s)	95, 125
BmsI	GCATC	3 cut(s)	129, 136, 451
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 100
Bse1I	ACTGG	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	95, 125
BseGI	GGATG	2 cut(s)	120, 466
BseLI	CCNNNNNNNGG	2 cut(s)	88, 100
BseMII	CTCAG	2 cut(s)	182, 474
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	88, 100
BsmAI	GTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	78, 163, 187, 256, 406
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	181, 475
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	80, 418
BspPI	GGATC	3 cut(s)	73, 86, 158
BspTI	CTTAAG	2 cut(s)	38, 133
BsrBI	CCGCTC	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	78, 163, 187, 256, 406
BssSI	CACGAG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	95, 125
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	51, 471
BstAFI	CTTAAG	2 cut(s)	38, 133
BstC8I	GCNNGC	3 cut(s)	322, 415, 503
BstDEI	CTNAG	2 cut(s)	168, 483
BstF5I	GGATG	2 cut(s)	120, 466
BstKTI	GATC	5 cut(s)	81, 166, 190, 259, 409
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	78, 163, 187, 256, 406
BstNI	CCWGG	2 cut(s)	95, 125
BstSCI	CCNGG	2 cut(s)	93, 123
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	120, 466
Cac8I	GCNNGC	3 cut(s)	322, 415, 503
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	209, 254, 266
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	168, 483
DpnI	GATC	5 cut(s)	80, 165, 189, 258, 408
DpnII	GATC	5 cut(s)	78, 163, 187, 256, 406
Eam1104I	CTCTTC	2 cut(s)	51, 471
EarI	CTCTTC	2 cut(s)	51, 471
Eco147I	AGGCCT	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	93, 123
FaeI	CATG	3 cut(s)	212, 257, 269
FaiI	YATR	6 cut(s)	210, 255, 267, 288, 360, 533
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	208, 253, 265
FbaI	TGATCA	3 cut(s)	187, 256, 406
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	2 cut(s)	107, 473
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	212, 257, 269
HindIII	AAGCTT	2 cut(s)	35, 290
HinfI	GANTC	5 cut(s)	221, 270, 363, 370, 542
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	197, 275
Hpy188III	TCNNGA	3 cut(s)	209, 307, 367
HpyAV	CCTTC	3 cut(s)	293, 341, 529
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	168, 483
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	212, 257, 269
Ksp22I	TGATCA	3 cut(s)	187, 256, 406
Kzo9I	GATC	5 cut(s)	78, 163, 187, 256, 406
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	3 cut(s)	129, 136, 451
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	16, 45, 364
MalI	GATC	5 cut(s)	80, 165, 189, 258, 408
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	5 cut(s)	78, 163, 187, 256, 406
MboII	GAAGA	6 cut(s)	65, 68, 167, 230, 488, 551
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	4 cut(s)	110, 233, 330, 398
MlyI	GAGTC	2 cut(s)	372, 379
MnlI	CCTC	6 cut(s)	52, 91, 177, 433, 449, 472
MseI	TTAA	2 cut(s)	39, 134
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	172
MspCI	CTTAAG	2 cut(s)	38, 133
MspR9I	CCNGG	2 cut(s)	95, 125
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	2 cut(s)	95, 125
NdeII	GATC	5 cut(s)	78, 163, 187, 256, 406
NlaIII	CATG	3 cut(s)	212, 257, 269
NlaIV	GGNNCC	2 cut(s)	80, 418
NmuCI	GTSAC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	221, 270, 542
PflMI	CCANNNNNTGG	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	2 cut(s)	371, 378
PpsI	GAGTC	2 cut(s)	371, 378
Psp6I	CCWGG	2 cut(s)	93, 123
PspGI	CCWGG	2 cut(s)	93, 123
PspN4I	GGNNCC	2 cut(s)	80, 418
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	39, 134
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	5 cut(s)	78, 163, 187, 256, 406
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	372, 379
ScrFI	CCNGG	2 cut(s)	95, 125
SfaNI	GCATC	3 cut(s)	129, 136, 451
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	38, 133
SmoI	CTYRAG	2 cut(s)	38, 133
Sse9I	AATT	4 cut(s)	110, 233, 330, 398
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	93, 123
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	51, 454
TasI	AATT	4 cut(s)	110, 233, 330, 398
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	221, 270, 542
Tru1I	TTAA	2 cut(s)	39, 134
Tru9I	TTAA	2 cut(s)	39, 134
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	123, 275, 548
Van91I	CCANNNNNTGG	1 cut(s)	100
Vha464I	CTTAAG	2 cut(s)	38, 133
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	233, 398
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.