Rh2CG297000

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000482
Physical Location & Seq
Forward (+)
34220575 .. 34230787
10213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG297000.1

Sequence Viewer

Length: 318 bp
ATGCCTTGTATTGAAAATCTAATCATTCGGCGCTGTAAATCACTGGAGAAAGTCCCATCAGGCATTGAACATCTCATCAAACTAAAGTTGCTTAAGTTTTTTGATATGCCAGAAAAACTAATCAAGACTCTACTTCCACATGAGCATGGCAATGATTATTGGAAAGTTGCGCATGTCCCAGAAGTTTATGTCACCTACTTGAGAGAGTTTGGGTGGGAAGTATTCTCATTAGAGGGCTTGAGTGAGACACAAATCTCTTCTCAACCCAGTTCTGTCATGAAGAGCATTGGAACCGGTTGGAAGAAATCTAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

105

Amino Acids

12.16

Weight (kDa)

7.8

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AflII CTTAAG 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 2 cut(s) 14, 68
Alw26I GTCTC 1 cut(s) 239
AsiGI ACCGGT 1 cut(s) 293
AspLEI GCGC 2 cut(s) 33, 172
AsuHPI GGTGA 1 cut(s) 184
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 220, 259
BsaWI WCCGGW 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 48, 267
Bse3DI GCAATG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 48, 267
BshTI ACCGGT 1 cut(s) 293
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 2 cut(s) 38, 161
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 38, 161
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 2 cut(s) 48, 267
BssAI RCCGGY 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 262, 275
BstAFI CTTAAG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 2 cut(s) 33, 172
BstMAI GTCTC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 41
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 33, 172
Cfr10I RCCGGY 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 4 cut(s) 140, 146, 173, 277
CviJI RGCY 1 cut(s) 237
CviKI_1 RGCY 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 262, 275
EarI CTCTTC 2 cut(s) 262, 275
FaeI CATG 4 cut(s) 143, 149, 176, 280
FaiI YATR 6 cut(s) 107, 141, 147, 174, 189, 278
FaqI GGGAC 2 cut(s) 38, 161
FatI CATG 4 cut(s) 139, 145, 172, 276
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 2 cut(s) 32, 171
GsuI CTGGAG 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 34
HapII CCGG 1 cut(s) 294
HhaI GCGC 2 cut(s) 33, 172
Hin1II CATG 4 cut(s) 143, 149, 176, 280
Hin6I GCGC 2 cut(s) 31, 170
HinP1I GCGC 2 cut(s) 31, 170
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 124, 277
Hsp92II CATG 4 cut(s) 143, 149, 176, 280
HspAI GCGC 2 cut(s) 31, 170
LguI GCTCTTC 1 cut(s) 275
LpnPI CCDG 6 cut(s) 29, 45, 123, 192, 280, 307
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 3 cut(s) 249, 292, 313
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 1 cut(s) 226
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 2 cut(s) 144, 150
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 1 cut(s) 294
NlaIII CATG 4 cut(s) 143, 149, 176, 280
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 1 cut(s) 176
PagI TCATGA 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 293
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 144, 150
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 93
SchI GAGTC 1 cut(s) 121
SetI ASST 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 144, 150
SmlI CTYRAG 3 cut(s) 92, 199, 238
SmoI CTYRAG 3 cut(s) 92, 199, 238
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 92
XceI RCATGY 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.