Rh7DG275600

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
29666224 .. 29667504
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG275600.1

Sequence Viewer

Length: 1281 bp
ATGTGGTCTGACAAAGTTCGACGACTATCAATAGTTAATACATTGCAGAATGTACAAAAGAAGAGGACTCCATCTAAACTTCGCTCTTTGCTCATCTTTGGGGTAGAAGATTCACTAAATGAATTTTCCATACCAAAATTGTTTCCAATGGGTCTTCAGCTGCTAACTGTATTAGACTTGCAAGGTGCACATCTACAGGTGTTTCCAAAAGAGGTTGTGAAGCTGGTTTTTCTCAGATACCTTAGCCTGAGGAATAGCAAGGTGAAACAAATTCCAAGCTCCATCAAGAAGCTTAGAAACCTAGAGACTCTCGACCTCAAACACTCCCATGTTGTTGAATTGCCTGCTGAGATTTTGAATCTCAAGCAACTTCGCCATCTCCTGGTGTATCGTTATGAAGTTGAGTCCTATGCACGATTTAATGCCAAATATGGAGTTAAGCTTCCTGCAGGAATATGTAGCTTGCAATCTCTCCAAAAGCTTTGTTTTATAGAGGCAAATCAATACAGTGGCGCTTTAATGGCAGAGCTAGGGAGAATGAATCAACTAAGGAGGTTAGGCATTTTGAAGTTGAGAAAAGAAGATGGGGTAACCTTATGCTCATCCATCCAAATGATGACAAATCTTCGCTCGTTGTCTGTATCTTCTGCAGAGATGGACGAGTTAATTGATTTGAGCTACATGTCCTGTGCTCCTGAGTTTCTTAGGCGACTGTACTTGACAGGTCGTTTAGCAAACTTACCACACTGGATTTCTTCACTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGCTGAAGGAAGATCCTCTAGTACATCTTCAGGGTTTGCCAAATCTGGTACATCTTGAACTGCTACAAGTTTTTGATGGAGAAAGCTTGCATTTTGAGGCAGGAGGGTTTCCAAGACTGAAGTTATTAGGCATTGATAAGTTAGATGAACTTCAATCAGTAATCATAGATAAGGGAGCAATGCCTTGTCTAGAAAAGTTAATTATTCAGCGATGTGAATCATTGAAGAAGGTCCCATATGGCATTGAGCATTTAAAAAGGTTAAAGTTGCTTGAGTTTTTTGATATGCCAAATGAACTAATCATGCTTCTACATCCAGATGGTGGAGGTGATCATTGGAAAGTCGCTCATGTCCCGGCAGTTTACTATTCCTATTGGAGAAATGATGGGTGGGATGTCTACTCATTAGTCAATGAAGGGGAGAGTTTTAATACAGGTACTTCGGCTGTGAGGAAGCTCTTTCGTAATATATTATGGAAGGCATAG

Protein Analysis

426

Amino Acids

49.0

Weight (kDa)

9.39

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 26 - 356 3.1e-48 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000482)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica MD06G1024000.v1.1
prunus_persica Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis pycom16g25280
rosa_chinensis RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii Rroxscaffold_3G00246720
rosa_rugosa Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 382, 1118
AccI GTMKAC 1 cut(s) 1194
AclWI GGATC 1 cut(s) 803
AcsI RAATTY 2 cut(s) 122, 270
AcuI CTGAAG 4 cut(s) 140, 809, 821, 935
AfaI GTAC 5 cut(s) 54, 716, 819, 846, 1234
AfiI CCNNNNNNNGG 2 cut(s) 382, 1118
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 7 cut(s) 338, 358, 568, 764, 854, 950, 1021
AjnI CCWGG 2 cut(s) 381, 768
Alw21I GWGCWC 2 cut(s) 190, 694
Alw26I GTCTC 1 cut(s) 299
Alw44I GTGCAC 1 cut(s) 186
AlwI GGATC 1 cut(s) 803
ApaLI GTGCAC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 122, 270
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 1027
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 2 cut(s) 274, 1136
AvaII GGWCC 1 cut(s) 1027
AxyI CCTNAGG 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 190, 694
BbvI GCAGC 1 cut(s) 147
BccI CCATC 9 cut(s) 79, 290, 384, 578, 614, 649, 866, 1109, 1175
BciT130I CCWGG 2 cut(s) 383, 770
BclI TGATCA 1 cut(s) 1126
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 4 cut(s) 302, 530, 815, 986
BfmI CTRYAG 3 cut(s) 194, 447, 648
BfoI RGCGCY 1 cut(s) 516
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 383, 770, 1151
Bme18I GGWCC 1 cut(s) 1027
BmgT120I GGNCC 1 cut(s) 1027
BmiI GGNNCC 1 cut(s) 1029
BmrFI CCNGG 3 cut(s) 383, 770, 1151
BpiI GAAGAC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 347, 1088
BpuMI CCSGG 1 cut(s) 1151
BsaBI GATNNNNATC 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 1118
Bse1I ACTGG 1 cut(s) 752
Bse21I CCTNAGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 41, 981
Bse8I GATNNNNATC 1 cut(s) 1012
BseBI CCWGG 2 cut(s) 383, 770
BseGI GGATG 4 cut(s) 602, 606, 1108, 1195
BseJI GATNNNNATC 1 cut(s) 1012
BseLI CCNNNNNNNGG 2 cut(s) 382, 1118
BseMI GCAATG 2 cut(s) 41, 981
BseMII CTCAG 4 cut(s) 239, 247, 339, 687
BseNI ACTGG 1 cut(s) 752
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 190, 694
BsiSI CCGG 1 cut(s) 1151
BslFI GGGAC 2 cut(s) 1013, 1133
BslI CCNNNNNNNGG 2 cut(s) 382, 1118
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 1013, 1133
Bsp1286I GDGCHC 2 cut(s) 190, 694
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 808, 1126
BspCNI CTCAG 4 cut(s) 240, 246, 340, 688
BspLI GGNNCC 1 cut(s) 1029
BspMAI CTGCAG 2 cut(s) 451, 652
BspPI GGATC 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 41, 981
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 1 cut(s) 752
BssMI GATC 2 cut(s) 808, 1126
Bst2UI CCWGG 2 cut(s) 383, 770
Bst4CI ACNGT 4 cut(s) 169, 509, 714, 780
Bst6I CTCTTC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 345, 464, 884
BstDEI CTNAG 8 cut(s) 233, 242, 248, 293, 348, 548, 696, 704
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 4 cut(s) 602, 606, 1108, 1195
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 2 cut(s) 811, 1129
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 808, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 2 cut(s) 383, 770
BstNSI RCATGY 1 cut(s) 685
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 381, 768, 1149
BstSFI CTRYAG 3 cut(s) 194, 447, 648
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
Bsu36I CCTNAGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 1021
BtsCI GGATG 4 cut(s) 602, 606, 1108, 1195
BtsIMutI CAGTG 2 cut(s) 514, 745
Cac8I GCNNGC 3 cut(s) 345, 464, 884
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 1027
CsiI ACCWGGT 1 cut(s) 768
Csp6I GTAC 5 cut(s) 53, 715, 818, 845, 1233
CviAII CATG 4 cut(s) 329, 682, 1099, 1145
CviQI GTAC 5 cut(s) 53, 715, 818, 845, 1233
DdeI CTNAG 8 cut(s) 233, 242, 248, 293, 348, 548, 696, 704
DpnI GATC 2 cut(s) 810, 1128
DpnII GATC 2 cut(s) 808, 1126
DraI TTTAAA 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 1027
Eco57I CTGAAG 4 cut(s) 140, 809, 821, 935
Eco81I CCTNAGG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 1027
EcoO65I GGTNACC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 381, 768
FaeI CATG 4 cut(s) 332, 685, 1102, 1148
FaqI GGGAC 2 cut(s) 1013, 1133
FatI CATG 4 cut(s) 328, 681, 1098, 1144
FauNDI CATATG 1 cut(s) 1033
FbaI TGATCA 1 cut(s) 1126
FblI GTMKAC 1 cut(s) 1194
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 4 cut(s) 589, 593, 1095, 1202
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 4 cut(s) 302, 530, 815, 986
GlaI GCGC 1 cut(s) 514
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 516
HapII CCGG 1 cut(s) 1151
HhaI GCGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 332, 685, 1102, 1148
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HindIII AAGCTT 4 cut(s) 290, 440, 479, 880
HinfI GANTC 8 cut(s) 67, 110, 307, 358, 404, 541, 793, 1013
HpaII CCGG 1 cut(s) 1151
HphI GGTGA 2 cut(s) 274, 1136
Hpy166II GTNNAC 3 cut(s) 188, 1159, 1195
Hpy188I TCNGA 3 cut(s) 10, 236, 776
Hpy188III TCNNGA 6 cut(s) 286, 311, 695, 851, 986, 1112
Hpy8I GTNNAC 3 cut(s) 188, 1159, 1195
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 4 cut(s) 796, 1018, 1205, 1267
HpyCH4III ACNGT 4 cut(s) 169, 509, 714, 780
HpyCH4V TGCA 8 cut(s) 46, 181, 188, 413, 449, 466, 650, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 8 cut(s) 233, 242, 248, 293, 348, 548, 696, 704
Hsp92II CATG 4 cut(s) 332, 685, 1102, 1148
HspAI GCGC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 2 cut(s) 808, 1126
LmnI GCTCC 3 cut(s) 284, 697, 971
Lsp1109I GCAGC 1 cut(s) 147
MabI ACCWGGT 1 cut(s) 768
MaeI CTAG 4 cut(s) 302, 530, 815, 986
MaeIII GTNAC 1 cut(s) 589
MalI GATC 2 cut(s) 810, 1128
MboI GATC 2 cut(s) 808, 1126
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 2 cut(s) 190, 694
MluCI AATT 6 cut(s) 122, 137, 270, 338, 666, 996
MlyI GAGTC 4 cut(s) 61, 301, 413, 802
MseI TTAA 9 cut(s) 36, 420, 438, 518, 665, 995, 1049, 1058, 1224
MslI CAYNNNNRTG 3 cut(s) 327, 611, 1113
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 1151
MspR9I CCNGG 3 cut(s) 383, 770, 1151
MvaI CCWGG 2 cut(s) 383, 770
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 1151
NdeI CATATG 1 cut(s) 1033
NdeII GATC 2 cut(s) 808, 1126
NlaIII CATG 4 cut(s) 332, 685, 1102, 1148
NlaIV GGNNCC 1 cut(s) 1029
NspI RCATGY 1 cut(s) 685
PciI ACATGT 1 cut(s) 681
PfeI GAWTC 4 cut(s) 110, 358, 541, 1013
PflMI CCANNNNNTGG 2 cut(s) 382, 1118
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 4 cut(s) 61, 301, 412, 801
PpsI GAGTC 4 cut(s) 61, 301, 412, 801
PpuMI RGGWCCY 1 cut(s) 1027
PscI ACATGT 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 2 cut(s) 381, 768
PspEI GGTNACC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 381, 768
PspN4I GGNNCC 1 cut(s) 1029
PspPI GGNCC 1 cut(s) 1027
PspPPI RGGWCCY 1 cut(s) 1027
PstI CTGCAG 2 cut(s) 451, 652
PsuI RGATCY 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 5 cut(s) 54, 716, 819, 846, 1234
RsaNI GTAC 5 cut(s) 53, 715, 818, 845, 1233
RseI CAYNNNNRTG 3 cut(s) 327, 611, 1113
SaqAI TTAA 9 cut(s) 36, 420, 438, 518, 665, 995, 1049, 1058, 1224
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 808, 1126
Sau96I GGNCC 1 cut(s) 1027
SbfI CCTGCAGG 1 cut(s) 451
SchI GAGTC 4 cut(s) 61, 301, 413, 802
ScrFI CCNGG 3 cut(s) 383, 770, 1151
SdaI CCTGCAGG 1 cut(s) 451
SduI GDGCHC 2 cut(s) 190, 694
SexAI ACCWGGT 1 cut(s) 768
SfcI CTRYAG 3 cut(s) 194, 447, 648
SinI GGWCC 1 cut(s) 1027
SmiMI CAYNNNNRTG 3 cut(s) 327, 611, 1113
SmlI CTYRAG 2 cut(s) 362, 1067
SmoI CTYRAG 2 cut(s) 362, 1067
Sse8387I CCTGCAGG 1 cut(s) 451
Sse9I AATT 6 cut(s) 122, 137, 270, 338, 666, 996
SspMI CTAG 4 cut(s) 302, 530, 815, 986
StyD4I CCNGG 3 cut(s) 381, 768, 1149
TaaI ACNGT 4 cut(s) 169, 509, 714, 780
TaqI TCGA 2 cut(s) 19, 312
TasI AATT 6 cut(s) 122, 137, 270, 338, 666, 996
TatI WGTACW 3 cut(s) 52, 714, 817
TfiI GAWTC 4 cut(s) 110, 358, 541, 1013
Tru1I TTAA 9 cut(s) 36, 420, 438, 518, 665, 995, 1049, 1058, 1224
Tru9I TTAA 9 cut(s) 36, 420, 438, 518, 665, 995, 1049, 1058, 1224
TscAI CASTG 2 cut(s) 514, 752
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 6 cut(s) 135, 411, 554, 957, 1104, 1224
TspRI CASTG 2 cut(s) 514, 752
Van91I CCANNNNNTGG 2 cut(s) 382, 1118
VneI GTGCAC 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 1027
XapI RAATTY 2 cut(s) 122, 270
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 1194
XspI CTAG 4 cut(s) 302, 530, 815, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.