Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29920447 .. 29921215

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCAGAAAGTGTAGTCACCTTTTTGGTTGACAGGCTCACGACATTACTAGAAGAAGAGGTGAAACTATTGTCAGGGATCCGAGAACAGGTCGAGGACTTGGTTGATGAATTGGAGCGCATCAAAGCCTTCTTAAGGGTAACTGATGCAAAGGAAGACAGCAATCCTCAGCTCAAAGTGTGGGTAAAACAAGTCAGAGATGTAGCTCATGAAATGGAGGATGCCCTTGATAAATTCAGGCTTTTCCATTCACACGATCACGGCCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGCATCATCAAGAAATGGAAAGCTCACCATCAAATTTCTGATGATATTCAAAGAATAAACTCAAAAGTGAAAAGCCTCTCCGAGGGACATGAGAGATATACACTAGTTGACCAAGCTGGCTCCAGCTCTGCTCGGCTAGTTCAGCACCACAAATTTGGTCAAGGGGATTCCCTTTTACTGGAAGAGGCTGATCTTGTGGCAATTGGCGAGCGCAAAAAGCAACTGATTGAATTGCTTATGAAGGAAGACACTAGACGCCAGGTGGTTCCAGTACGGCAGGTGGTTCCAGTAGTTGGGATGGGTGGACTGGGGAAAACTACCTTGGTCAAGCAAGTCTACGAGGATCCAAAAGTTCAGAAACGTTTCAAGGAAACCAGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

226

Amino Acids

25.83

Weight (kDa)

7.2

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 87	1.5e-25	Rx N-terminal domain
NB-ARC	PF00931	171 - 222	5.7e-08	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	633
AclI	AACGTT	1 cut(s)	658
AclWI	GGATC	4 cut(s)	73, 86, 635, 648
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	233, 330, 449
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	5 cut(s)	88, 135, 379, 475, 590
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	347, 527, 664
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	7 cut(s)	172, 206, 278, 292, 320, 413, 423
AluI	AGCT	7 cut(s)	172, 206, 278, 292, 320, 413, 423
AlwI	GGATC	4 cut(s)	73, 86, 635, 648
AlwNI	CAGNNNCTG	1 cut(s)	678
AoxI	GGCC	1 cut(s)	262
ApoI	RAATTY	3 cut(s)	233, 330, 449
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	120, 510
AsuHPI	GGTGA	3 cut(s)	10, 73, 314
BamHI	GGATCC	2 cut(s)	78, 640
BbsI	GAAGAC	2 cut(s)	162, 549
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	333, 589
BceAI	ACGGC	2 cut(s)	277, 587
BciT130I	CCWGG	1 cut(s)	557
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	4 cut(s)	50, 401, 434, 549
BfrI	CTTAAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	557
BmiI	GGNNCC	5 cut(s)	80, 418, 564, 582, 642
BmrFI	CCNGG	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	614
BmsI	GCATC	4 cut(s)	129, 136, 211, 309
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	162, 549
BpmI	CTGGAG	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	265, 378, 618
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 135, 379, 475, 590
Bse1I	ACTGG	5 cut(s)	480, 566, 584, 609, 672
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	3 cut(s)	265, 378, 618
BseGI	GGATG	2 cut(s)	226, 600
BseLI	CCNNNNNNNGG	5 cut(s)	88, 135, 379, 475, 590
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	5 cut(s)	480, 566, 584, 609, 672
BshFI	GGCC	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	5 cut(s)	88, 135, 379, 475, 590
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	78, 256, 487, 640
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	5 cut(s)	80, 418, 564, 582, 642
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	4 cut(s)	73, 86, 635, 648
BspTI	CTTAAG	1 cut(s)	133
BsrI	ACTGG	5 cut(s)	480, 566, 584, 609, 672
BssECI	CCNNGG	3 cut(s)	265, 378, 618
BssMI	GATC	4 cut(s)	78, 256, 487, 640
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	2 cut(s)	265, 618
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	51, 474
BstACI	GRCGYC	1 cut(s)	553
BstAFI	CTTAAG	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	415, 506
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	265
BstENI	CCTNNNNNAGG	2 cut(s)	133, 377
BstF5I	GGATG	2 cut(s)	226, 600
BstHHI	GCGC	2 cut(s)	120, 510
BstKTI	GATC	4 cut(s)	81, 259, 490, 643
BstMBI	GATC	4 cut(s)	78, 256, 487, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 514
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstV2I	GAAGAC	2 cut(s)	162, 549
BstX2I	RGATCY	2 cut(s)	78, 640
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	2 cut(s)	78, 640
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	226, 600
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	415, 506
CaiI	CAGNNNCTG	1 cut(s)	678
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	120, 510
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	3 cut(s)	209, 266, 386
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	80, 258, 489, 642
DpnII	GATC	4 cut(s)	78, 256, 487, 640
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	51, 474
EarI	CTCTTC	2 cut(s)	51, 474
Eco130I	CCWWGG	2 cut(s)	265, 618
EcoNI	CCTNNNNNAGG	2 cut(s)	133, 377
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	265, 618
ErhI	CCWWGG	2 cut(s)	265, 618
FaeI	CATG	3 cut(s)	212, 269, 389
FaiI	YATR	6 cut(s)	210, 267, 288, 387, 396, 536
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	3 cut(s)	208, 265, 385
FblI	GTMKAC	1 cut(s)	633
FokI	GGATG	2 cut(s)	233, 607
FspBI	CTAG	4 cut(s)	50, 401, 434, 549
GlaI	GCGC	2 cut(s)	119, 509
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	1 cut(s)	264
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	2 cut(s)	120, 510
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	212, 269, 389
Hin6I	GCGC	2 cut(s)	118, 508
HinP1I	GCGC	2 cut(s)	118, 508
HincII	GTYRAC	2 cut(s)	31, 406
HindII	GTYRAC	2 cut(s)	31, 406
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	270, 464
HphI	GGTGA	3 cut(s)	10, 73, 314
Hpy166II	GTNNAC	4 cut(s)	31, 406, 602, 634
Hpy188I	TCNGA	6 cut(s)	83, 197, 275, 337, 379, 654
Hpy188III	TCNNGA	4 cut(s)	40, 209, 307, 678
Hpy8I	GTNNAC	4 cut(s)	31, 406, 602, 634
HpyAV	CCTTC	3 cut(s)	139, 293, 532
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	2 cut(s)	149, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 514
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	658
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	3 cut(s)	212, 269, 389
HspAI	GCGC	2 cut(s)	118, 508
Kzo9I	GATC	4 cut(s)	78, 256, 487, 640
LmnI	GCTCC	2 cut(s)	115, 422
LweI	GCATC	4 cut(s)	129, 136, 211, 309
MaeI	CTAG	4 cut(s)	50, 401, 434, 549
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	16, 139
MalI	GATC	4 cut(s)	80, 258, 489, 642
MboI	GATC	4 cut(s)	78, 256, 487, 640
MboII	GAAGA	5 cut(s)	65, 68, 167, 491, 554
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	78, 640
MluCI	AATT	6 cut(s)	110, 233, 330, 449, 498, 527
MnlI	CCTC	8 cut(s)	52, 88, 177, 211, 373, 383, 475, 631
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	264
MspCI	CTTAAG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	439, 514
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	4 cut(s)	78, 256, 487, 640
NlaIII	CATG	3 cut(s)	212, 269, 389
NlaIV	GGNNCC	5 cut(s)	80, 418, 564, 582, 642
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	270, 464
PflMI	CCANNNNNTGG	1 cut(s)	590
Psp1406I	AACGTT	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	5 cut(s)	80, 418, 564, 582, 642
PstNI	CAGNNNCTG	1 cut(s)	678
PsuI	RGATCY	2 cut(s)	78, 640
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	4 cut(s)	78, 256, 487, 640
ScrFI	CCNGG	1 cut(s)	557
SfaNI	GCATC	4 cut(s)	129, 136, 211, 309
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	6 cut(s)	110, 233, 330, 449, 498, 527
SspMI	CTAG	4 cut(s)	50, 401, 434, 549
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	2 cut(s)	265, 618
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	93
TasI	AATT	6 cut(s)	110, 233, 330, 449, 498, 527
TfiI	GAWTC	2 cut(s)	270, 464
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	4 cut(s)	123, 225, 275, 551
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	133
XagI	CCTNNNNNAGG	2 cut(s)	133, 377
XapI	RAATTY	3 cut(s)	233, 330, 449
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	4 cut(s)	50, 401, 434, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.