Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000482

Physical Location & Seq

Genomic Coordinates Reverse (-)

29805065 .. 29805364

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCAGAAAGTGCAGTCACCTTTTTGGTTAACAGGCTCACGACATTACTCGAAGAAGAGGCGGAACTCTTGTCAGGGATCCGAGAAAAGGTCGATGACCTGGTTGATGAATTGGAGCGCATCAAGGCCTTCTTAGCTGATGCAAAGGAAGACAGCAATCCTCAGCTCCAAGTGCGGGTTAAAAAGTCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

65

Amino Acids

7.38

Weight (kDa)

4.51

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 59	1.2e-12	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23450 FvH4_5g23460 FvH4_5g23470 FvH4_5g24290 FvH4_5g24300
malus_domestica	MD06G1024000.v1.1
prunus_persica	Prupe.5G025000_v2.0.a1 Prupe.5G025000_v2.0.a1 Prupe.5G025100_v2.0.a1 Prupe.5G025200_v2.0.a1
pyrus_communis	pycom16g25280
rosa_chinensis	RchiOBHm_Chr7g0212511 RchiOBHm_Chr7g0212531 RchiOBHm_Chr7g0212541 RchiOBHm_Chr7g0212561 RchiOBHm_Chr7g0212571 RchiOBHm_Chr7g0212621 RchiOBHm_Chr7g0212631 RchiOBHm_Chr7g0212671 RchiOBHm_Chr7g0212691 RchiOBHm_Chr7g0212701
rosa_laevigata	RLG00000002879 RLG00000002883 RLG00000002884 RLG00000002885
rosa_multiflora	Rmu_co8121580.1_g000001 Rmu_sc0000394.1_g000014 Rmu_sc0000394.1_g000015 Rmu_sc0001435.1_g000001 Rmu_sc0005246.1_g000005 Rmu_sc0005246.1_g000010 Rmu_sc0005246.1_g000015 Rmu_sc0005246.1_g000016 Rmu_sc0005770.1_g000018 Rmu_sc0005770.1_g000019 Rmu_sc0005770.1_g000020 Rmu_sc0007576.1_g000019 Rmu_sc0009400.1_g000001 Rmu_sc0011082.1_g000001 Rmu_sc0038076.1_g000002
rosa_roxburghii	Rroxscaffold_3G00246720
rosa_rugosa	Rorug07G0134800 Rorug07G0134900 Rorug07G0135100 Rorug07G0135200 Rorug07G0135400 Rorug07G0135500 Rorug07G0135800 Rorug07G0135900
rosa_samantha	Rh2AG310100 Rh2CG296700 Rh2CG297000 Rh2CG301700 Rh7BG258900 Rh7BG261600 Rh7BG261700 Rh7BG261800 Rh7BG261900 Rh7BG262000 Rh7BG262100 Rh7BG262400 Rh7BG262500 Rh7BG263100 Rh7BG263200 Rh7CG284400 Rh7CG284600 Rh7CG284700 Rh7CG284900 Rh7CG285100 Rh7CG285500 Rh7CG285600 Rh7CG285700 Rh7CG286200 Rh7CG286600 Rh7CG286700 Rh7DG274400 Rh7DG274600 Rh7DG274800 Rh7DG274900 Rh7DG275100 Rh7DG275200 Rh7DG275500 Rh7DG275600 Rh7DG275700
rosa_wichuraiana	Rw7G022910 Rw7G022960 Rw7G022980 Rw7G023010 Rw7G023050 Rw7G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 175
AclWI	GGATC	2 cut(s)	73, 86
AfiI	CCNNNNNNNGG	2 cut(s)	88, 175
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	137, 166
AluI	AGCT	2 cut(s)	137, 166
AlwI	GGATC	2 cut(s)	73, 86
AoxI	GGCC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	129, 130
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 175
BseBI	CCWGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	88, 175
BseMII	CTCAG	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	88, 175
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	62, 175
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	73, 86
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	133, 162
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 134, 172
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	99
CviJI	RGCY	4 cut(s)	37, 128, 137, 166
CviKI_1	RGCY	4 cut(s)	37, 128, 137, 166
DdeI	CTNAG	2 cut(s)	133, 162
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	99
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FauI	CCCGC	1 cut(s)	168
GlaI	GCGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	83, 190
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	14, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 134, 172
HpyF3I	CTNAG	2 cut(s)	133, 162
HspAI	GCGC	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	115, 171
LpnPI	CCDG	4 cut(s)	19, 60, 86, 113
LweI	GCATC	2 cut(s)	129, 130
MabI	ACCWGGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	65, 68, 161
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	1 cut(s)	110
MnlI	CCTC	2 cut(s)	52, 171
MseI	TTAA	2 cut(s)	30, 180
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	11, 134, 172
NdeII	GATC	1 cut(s)	78
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	30, 180
Sau3AI	GATC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	5 cut(s)	23, 93, 102, 139, 168
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	129, 130
Sse9I	AATT	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	62, 175
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	99
TaqI	TCGA	2 cut(s)	51, 93
TasI	AATT	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	30, 180
Tru9I	TTAA	2 cut(s)	30, 180
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.